mRNA_A-nodosum_M_contig115.45.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig115.45.1
Unique NamemRNA_A-nodosum_M_contig115.45.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig115.45.1 vs. uniprot
Match: D7G5K3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K3_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 1.300e-70
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 1
Query:    1 MRLLTHNVLRSPMKEVENGYPLRIEATDVQMVESDVKEDFVKNIAATLDWEALCKAASEVGMPEGSLPPALTPELLHDSSFIEALHRVLMDMHVVEGTLVCPETGRRFPITEGVPNLM 354
            MRLLTHNVLRSPMK V  GYPLRIEATDVQMVES+VKE+FVK++A TLDW ALCKAA+EVGMPEGSLPPALTPELL DSSF+EALHRVLMDMHVVEGTLVCPETGRRFPI EGVPNLM
Sbjct:    1 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAAAEVGMPEGSLPPALTPELLEDSSFLEALHRVLMDMHVVEGTLVCPETGRRFPIAEGVPNLM 118          
BLAST of mRNA_A-nodosum_M_contig115.45.1 vs. uniprot
Match: A0A836CHT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHT2_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.490e-46
Identity = 74/118 (62.71%), Postives = 92/118 (77.97%), Query Frame = 1
Query:    1 MRLLTHNVLRSPMKEVENGYPLRIEATDVQMVESDVKEDFVKNIAATLDWEALCKAASEVGMPEGSLPPALTPELLHDSSFIEALHRVLMDMHVVEGTLVCPETGRRFPITEGVPNLM 354
            MRLLTHNVLR  +K VE GYPL IEA++VQM ES  + DFVK+IA TL+W AL +A  +VG+PE  LP A++  LL D +F+ ALHRVLMD+HVV G LVCPE+GRRFPI  G+P++M
Sbjct:    1 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMM 118          
BLAST of mRNA_A-nodosum_M_contig115.45.1 vs. uniprot
Match: W7TQC2_9STRA (TRM112-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQC2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.130e-35
Identity = 59/118 (50.00%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 MRLLTHNVLRSPMKEVENGYPLRIEATDVQMVESDVKEDFVKNIAATLDWEALCKAASEVGMPEGSLPPALTPELLHDSSFIEALHRVLMDMHVVEGTLVCPETGRRFPITEGVPNLM 354
            MRL+THN+L+S +K V NG+PLRIEA  V++ E++   +FV+N+   +DW AL  A+ E+GM E  LP  +      D SF++ +H++L+D+HV+EG+LVCPETGRRFPI  G+PN++
Sbjct:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDE--LPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNML 167          
BLAST of mRNA_A-nodosum_M_contig115.45.1 vs. uniprot
Match: A0A2P6VL84_9CHLO (Multifunctional methyltransferase subunit TRM112 At1g22270 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VL84_9CHLO)

HSP 1 Score: 124 bits (310), Expect = 2.960e-34
Identity = 56/118 (47.46%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 MRLLTHNVLRSPMKEVENGYPLRIEATDVQMVESDVKEDFVKNIAATLDWEALCKAASEVGMPEGSLPPALTPELLHDSSFIEALHRVLMDMHVVEGTLVCPETGRRFPITEGVPNLM 354
            M+LLTHN+L   +K V+NG+P +IEA  V++ E+D + DF+++I   + W ALC+AA+ +G+ EG LP   T E+L D +F++  H  L+++H+ EG LVCPETGR+FP++ G+PNL+
Sbjct:    1 MKLLTHNMLACHIKGVQNGFPFKIEAEKVEVQEADFEPDFLQHIFPRIQWAALCEAAAAMGV-EG-LPAEATEEMLEDDAFMKKFHHALLEVHLQEGALVCPETGRKFPVSAGIPNLL 116          
BLAST of mRNA_A-nodosum_M_contig115.45.1 vs. uniprot
Match: A0A1Y1INK2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1INK2_KLENI)

HSP 1 Score: 123 bits (309), Expect = 4.210e-34
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 MRLLTHNVLRSPMKEVENGYPLRIEATDVQMVESDVKEDFVKNIAATLDWEALCKAASEVGMPEGSLPPALTPELLHDSSFIEALHRVLMDMHVVEGTLVCPETGRRFPITEGVPNLM 354
            MRLLTHN+L   +K V  GYPL+IEAT  +  E+D    F+++I   LDW+AL +AA+ +G+ E  LP  + P  L D  F+   H VL+++H+ EG LVCPETGRRFP+++G+PN++
Sbjct:    1 MRLLTHNMLACNIKGVTKGYPLKIEATKTEEKETDFNAGFLRHIYPKLDWKALREAAASLGLEE--LPEQVEPSQLEDEDFLRRFHHVLLEIHLEEGALVCPETGRRFPVSKGIPNML 116          
BLAST of mRNA_A-nodosum_M_contig115.45.1 vs. uniprot
Match: A0A5P1FB24_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FB24_ASPOF)

HSP 1 Score: 122 bits (307), Expect = 8.470e-34
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 MRLLTHNVLRSPMKEVENGYPLRIEATDVQMVESDVKEDFVKNIAATLDWEALCKAASEVGMPEGSLPPALTPELLHDSSFIEALHRVLMDMHVVEGTLVCPETGRRFPITEGVPNLM 354
            MRLLTHN+L S +K V +GYPLRIEA      E+D   DF++N+   +DW AL  AA  +G   G LP    P +L    F+   H  L+++HV EG LVCPETGRRFP+ +G+PN++
Sbjct:    1 MRLLTHNMLASNIKGVTSGYPLRIEAHQSAAKEADFNADFLRNVFPKIDWPALVSAAKTLGY--GDLPEEAEPSMLESDEFLRRFHHALLEVHVEEGALVCPETGRRFPVNKGIPNML 116          
BLAST of mRNA_A-nodosum_M_contig115.45.1 vs. uniprot
Match: UPI001425935F (multifunctional methyltransferase subunit TRM112-like protein n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425935F)

HSP 1 Score: 122 bits (307), Expect = 1.110e-33
Identity = 57/118 (48.31%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 MRLLTHNVLRSPMKEVENGYPLRIEATDVQMVESDVKEDFVKNIAATLDWEALCKAASEVGMPEGSLPPALTPELLHDSSFIEALHRVLMDMHVVEGTLVCPETGRRFPITEGVPNLM 354
            M+LLTHN+L S +K V+NGYPL+IEA +V+ VE D   DFV  +   L+W AL +AA  + +  G+LPP    E   +  F++ +HRVL+++ VVEG LVCPE+GR+FP++ G+PN++
Sbjct:    9 MKLLTHNMLTSHVKGVKNGYPLKIEAQEVKTVEVDFNPDFVSRMIPKLEWRALFEAAQTLDLV-GALPPEPIAEFESNEDFLKEVHRVLLEIEVVEGNLVCPESGRKFPVSNGIPNML 125          
BLAST of mRNA_A-nodosum_M_contig115.45.1 vs. uniprot
Match: I0Z8N2_COCSC (Trm112p-domain-containing protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z8N2_COCSC)

HSP 1 Score: 122 bits (306), Expect = 1.200e-33
Identity = 54/118 (45.76%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 MRLLTHNVLRSPMKEVENGYPLRIEATDVQMVESDVKEDFVKNIAATLDWEALCKAASEVGMPEGSLPPALTPELLHDSSFIEALHRVLMDMHVVEGTLVCPETGRRFPITEGVPNLM 354
            M+LLTHN+L   +K V+NG+P +IE   V+ V++D   DF+++I   L+W+ALC+AA+ +G P   LP  ++ E+L D  F+ + H  L+++ + EG LVCPETGR+FP+ +GVPNL+
Sbjct:    1 MKLLTHNMLSCHIKGVQNGFPFKIEPVKVEQVDADYDPDFLRHIYPRLEWKALCEAAATMGAP--GLPEEVSEEMLQDDDFLRSFHHALLELVLEEGALVCPETGRQFPVHKGVPNLL 116          
BLAST of mRNA_A-nodosum_M_contig115.45.1 vs. uniprot
Match: A7RGF4_NEMVE (Multifunctional methyltransferase subunit TRM112-like protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RGF4_NEMVE)

HSP 1 Score: 122 bits (306), Expect = 1.240e-33
Identity = 56/118 (47.46%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 MRLLTHNVLRSPMKEVENGYPLRIEATDVQMVESDVKEDFVKNIAATLDWEALCKAASEVGMPEGSLPPALTPELLHDSSFIEALHRVLMDMHVVEGTLVCPETGRRFPITEGVPNLM 354
            MRLLTHN+L+S +K V+NG+PL IEA DVQ+ E D   +F+  +   L+WEAL +AA ++G  +  LP  L      D+ F++  H VL+++ V EG L+CPETGR+FP+T G+PN++
Sbjct:    1 MRLLTHNMLKSHVKGVKNGFPLAIEAQDVQVCEVDFNPEFISRMIPKLEWEALVQAAQQIGHGQ-DLPTQLAEGYESDNDFLKKAHHVLLEVEVQEGQLICPETGRKFPVTNGIPNML 117          
BLAST of mRNA_A-nodosum_M_contig115.45.1 vs. uniprot
Match: UPI001CF2BFAF (multifunctional methyltransferase subunit TRM112-like protein n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF2BFAF)

HSP 1 Score: 122 bits (306), Expect = 1.240e-33
Identity = 56/118 (47.46%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 MRLLTHNVLRSPMKEVENGYPLRIEATDVQMVESDVKEDFVKNIAATLDWEALCKAASEVGMPEGSLPPALTPELLHDSSFIEALHRVLMDMHVVEGTLVCPETGRRFPITEGVPNLM 354
            MRLLTHN+L+S +K V+NGYPL IE ++V + E D   +F+  +   ++W AL +AA +VG  EG LP  + P+  +D  F++ +H VL+++ V EG+LVCPETGR+FPI  G+PN++
Sbjct:    1 MRLLTHNMLKSHVKGVKNGYPLAIEVSNVVVNEVDFNPEFISRMIPKVEWAALLQAAEQVGRSEG-LPAEVIPDYENDQEFLKKVHHVLLEVQVEEGSLVCPETGRKFPIKNGIPNML 117          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig115.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5K3_ECTSI1.300e-7088.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHT2_9STRA2.490e-4662.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TQC2_9STRA4.130e-3550.00TRM112-like protein n=1 Tax=Nannochloropsis gadita... [more]
A0A2P6VL84_9CHLO2.960e-3447.46Multifunctional methyltransferase subunit TRM112 A... [more]
A0A1Y1INK2_KLENI4.210e-3448.31Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A5P1FB24_ASPOF8.470e-3448.31Uncharacterized protein n=1 Tax=Asparagus officina... [more]
UPI001425935F1.110e-3348.31multifunctional methyltransferase subunit TRM112-l... [more]
I0Z8N2_COCSC1.200e-3345.76Trm112p-domain-containing protein n=2 Tax=Coccomyx... [more]
A7RGF4_NEMVE1.240e-3347.46Multifunctional methyltransferase subunit TRM112-l... [more]
UPI001CF2BFAF1.240e-3347.46multifunctional methyltransferase subunit TRM112-l... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig115contigA-nodosum_M_contig115:540482..545669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5K3
Preferred nameTRMT112
PFAMsTrm112p
Model size357
Max annot lvl2759|Eukaryota
KEGG koko:K15448
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0018364,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030488,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0036265,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046982,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:2000232,GO:2000234
Exons3
Evalue2.12e-71
EggNOG OGsKOG1088@1|root,KOG1088@2759|Eukaryota
Ec32 ortholog descriptionUncharacterised protein family UPF0434/Trm112
Ec32 orthologEc-22_000960.1
Descriptionpeptidyl-glutamine methylation
Cds size357
COG categoryS
BRITEko00000,ko03012,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866555.5520895-CDS-A-nodosum_M_contig115:540481..5406611680866555.5520895-CDS-A-nodosum_M_contig115:540481..540661Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig115 540482..540661 -
1680866555.5625196-CDS-A-nodosum_M_contig115:541052..5411391680866555.5625196-CDS-A-nodosum_M_contig115:541052..541139Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig115 541053..541139 -
1680866555.5718994-CDS-A-nodosum_M_contig115:545579..5456691680866555.5718994-CDS-A-nodosum_M_contig115:545579..545669Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig115 545580..545669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig115.45.1prot_A-nodosum_M_contig115.45.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig115 540482..545669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig115.45.1

>prot_A-nodosum_M_contig115.45.1 ID=prot_A-nodosum_M_contig115.45.1|Name=mRNA_A-nodosum_M_contig115.45.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp
MRLLTHNVLRSPMKEVENGYPLRIEATDVQMVESDVKEDFVKNIAATLDW
EALCKAASEVGMPEGSLPPALTPELLHDSSFIEALHRVLMDMHVVEGTLV
CPETGRRFPITEGVPNLM*
back to top

mRNA from alignment at A-nodosum_M_contig115:540482..545669-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig115.45.1 ID=mRNA_A-nodosum_M_contig115.45.1|Name=mRNA_A-nodosum_M_contig115.45.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5188bp|location=Sequence derived from alignment at A-nodosum_M_contig115:540482..545669- (Ascophyllum nodosum dioecious)
ATGCGCTTACTAACTCATAACGTGCTTCGGTCGCCGATGAAGGAGGTGGA GAACGGGTATCCCTTACGCATTGAAGCCACCGATGTCCAGGTCAGAAAAC GAACCCACGTTCTAGTTCGGGCAGAGTCGTGGATCGTGATCCTACCTCCC CAATTGATATTTTTCTCCTGCAGAAATGATTACTACTACTGTACAAAGTC TGAGATTAGGGGTAGAGAGGAGTGAAAAAATCTGGGCGGTGTGTGGTCAC GCCTGCAGGGCTTATCGATTATCGGGTTACTTGTCGCGATCATTGAGTTC GCGCGCGGGAGCGCGCGAACAAACTACTTGAGAAATCTACCATAATATTA TTACCGCGCGGACTTTGACGGCAAATTGTTACCGGGTATAAAGACTGATT AATAAATAAATGGACGCCGCCGCGGAACTCGGAAGGAATCCCGTAAGTAA GCATCAGATTCAGCCTAAGCATGGAGATGAGCACGCTGACGCGGGACGGG ACTGCGGAACTCGTTCCGTGAAACCAAGTTCTCAGGCACGAACGGGGACA GGGAAATATTATTTTTCCCTGTTCAGCTGACCACAAACAGGATTGGCTAC CTTACCCGGTTGATCTGTACTCTTGCTATATGTGTGACAATACATAGATG CATACATAAAGACTGGTACCGAGTGAATCTGGCATCAACTGACTTTTTTA CCTTGTGGTTTGACCGTAACTTTATCACGAAATACTTTGATCCCTTTTCT TTGATAGGTAGTGTGCACGCAAGACTACAAACAACTTGCGCTGTCGTTGC CATAAGTTCGCGATTTTCGACCATGTAATATGCAGTGGGTTCATGCCTGT GAGCTGGATCTCCTGCTTGCTTGCTGGTAATAGGAGAACGTGTTTCGTCG TATGCGTAAATGGACGGAGATTCGAAGTGTTGTATGTATGGTCATCACAT AAAGCATAGTATAGATCAACCGGGTAAGGCTGTCAGTCCTGCTCGTGGTC AGCTGGACAGGAAAACTGGTATTTCCCCTGTCCCCACTCGCGCCTGAGAA TATGGTCTCGCTAGACAGGTTTGGCCGTCCCGTCCCTCGTCAGCCTGCTC ATTCTTCACACTCAGGCTGAATCTGGTGCTTACTCACGGGATTCTTGATG TTTGCGACGGCGTCCACATGCACCCTCAACCGCCATCGGGTCAGCCCCGA GTTTATTGGGCCACGCATTTGCGTACCGATGGCGTTCACCGCCGAGAATC CGCCGACAAACAGTGCTAGTAGTCCTCAAGGAAGTTACCGCAACAGATGC TGCCTTTTCAGATATCACCATGGACCAATTTTGATGCGCCTCTCTTTTCC CACACCCACTATTGGTGTGTAGTGGGCATGATGATGTTAATGTGCGATGC AAGAAGTGTCGGAGGCAATGTTACAAGTATGTAAATCGAAGCGATATTCG ATCAATTATCGACAGCACAGCTCATTTCTCAAAGCAGGCCTCGCTGCTGG TGCTTTGTCTTCCGCAGTGTGTGCGGTGTGTGCAGTAAACGCAGTAATCA CGCAACACGTCTCGAGGATCACTACTGTAGTGCTTTCGTCTCAGCAGCAG CAACAGCGATAATGCTTGATTCGTGTTATATCTTAAGCCTTTACAGCTGA GGCACTACGCACGTGGTATGTAGCATGGGAGCTGTGTTACTGTATGTATG TATTTATGTATGGTCATCACATATAGCAGAGCATGGATCAACCGGGTAAG GTTGTCAATCCTGCTCGTGGTCAGCTGAACAAGGAAAATGAATATTCCCC TGTCCCCGTACGTGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGCCGT CCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGC TTACTCACGGGTTCCGTCCCGATTTCCGCGGCGGCGTCCATTTATTTATC TGGACCGCCACACGTCATTGGGTCAGTCCCGAGTTTATCGGGTCACGCAA TTGCGTACAAATGACGTTCACTGCCGAGAGTCCGCCGGCACAAAGCCAGT AGTCCTCAAGGTAGTTCAAGTAACGGGTGCTGCCATTTTGGAGGTCACCA TGGACCAATTAATGTGCGCCTCTCTTTTCCCACACCCACTATTGGTATGA AGTAGGCATGTTGATAGAAGGCGGAGTATAGAAATGACTCGTAAACAGTT GTAGAAAGGCCTCAAAACAACACTATAAATGACATAAATGCTGCACCGCC ATGCAGTCGCTAAGCGCACGTCTCATGGGCACGAGCTACACGAGAGACTT TTAACACGGCAAGCTCAAGTTGCGGCTCTGTCGCATCGTAAGGTACTATG GTATTATGAAGGATTTCAAAAGTTGAAGCAGGCAACGAGGGTTATTGGCC ACAGCACCCTGTACGAGGTATGTATGTGTGGTCATCACATATAGCAGAGT ATGGATCAACCTGGTAAGGTACAAGGGTGTTATGGAGAGTCAATAATATT AAATAGGACGTATTTTTGGCAAAATTGTGAAAAATATAACATCTCAAAAC ATTTTAGTTTTGGGAACAGAAACGTTTTTGGCCAAAACTGAGATACCTTT AGTCGCCCCCCACGTAGTAAAGGCGGTTACAGCACAGCGTGTTGTGGAAC ATGTCCGATAGTACCCATTCGTTGTCACACGCCAGTAATTGGTGTAGAAA TAGAGAGGCGCGCAAAAAATGGTCCACGGTGATACCTGAAAAGACATGAC CCGTTACTGTAACTACCTTGGGGACTACTAGCCCTGTGCCGGCGGATACT CTCGGCAGTGAACACCATCGATACGCAATCGCGTGACCTGATAAACTCTA ATAGGGACTGACACGATGACGGCTGACGGTATATATGGACGCCGTCGCGG GGAAGCGGGAGGAATCCCATGAATGAGCACCAACCAATCAGATTTAGCTC ATGGAGAATGAGCGAGCTGACGCAGGACGGGACGGCCGAACCCGTCTGGC GAGACCGAATCCTCAAGCGCGAACGGGGATAGGGAGAAAAATATTTTCCA TGTTCCGCTGACCATGACCAGGATTGGCAACACAACCATACCCGGTCAAT CCTAACTCTGCTGAAATTGCTGACTACTGTATAAAACCATACAAACATCC CACACGGCTAGTAGGTGACGTGCACACCTGCTAGTGCGGAAGTCGTGAGT TCGATTCTTGTCAAAGTAGGATTTTTGTTCTGGCGGCCGTAGCGGAAAGG GCGAGAACGTGAGTTACGTAAAATTCACCATTGGTTGACTGACGACTTGT AAGAGTGCTGAACTTGCATCGCGATAAAAAAAATCGCAAGGCGTGAACCG GGGAGAGATGGGAAGACCCTTAGTGACCACAGGCAGGATGGTAATGATGA GGGAGGTCCATCGGCTATAAGTAACTGCGTCAATCTTCACGAAAAGGCGG TTGTTATCTGTAGCAACAACCAGACAGGAGCTATGTACTTAATGTACTTA ATGTATAGAGCTATGTATAGATAGAATCACTCACTCTTGGCGCACCCCCC TTGAACCATCTTTTGATGTGCCCGGCAGGTTCTTGAAGCTGCTCGAGTTT CTTACCACTATTAGTACAAGAGAACTGATGACTTTAATCATTTCCCCCAT AACCGAGGGATGCTCAGAAGGTCTAGGTTTGGTCTGATTTTTCTTTGAAA AGCACTTGTACAGTCTTACTTTTATTAATATTAATAGGAAAGTATGGAAC CCTATCTTCTTCTCCCACAAGCACATAGAGGTGGGATGCGACAACATCCA TGCCTGGAAGTGTTTCGCGTTTGGTTTCTTCGCTTGTCTTCGGAAGCAGT AATATTATATTATATTATAGTTATAGTATGGTGTTTTGGCCATCCGAAAT ACTTGGAAGTGCGTATTGTTCTGTGTCTTCCCCGAATGAAATGGGTGTAT TCCGTGTGTACAGAAGCTTTTTTCAGGACTGCTCTCGCTCTCTTGACGGT ACATACAAATAGCGGATGACTTTTTCATGCTTCTCGCACCAATATTTCCC AACACGTTAGTCCTCCCGACAGGTGAGTCCGCAGTGGATGAGTCTTTGGT TTCCGTGTTCAACCCCCCCCCACGCATGATGGCGTGACACGGCTTCTGTG TTGCCGAAGCACGGTGGTTAGTTTTATTCGAGCGCAACGCGGGCCTGACT TGATTGATCCAAGACAAACTTTTTGTGGCGTTAAAAAAATACCAGATAAA AAGTGAGAGATTGGTGAATAACAATAAATAAATAAAACTTCCTCCAAAGA AATCTCGAACCCGGCCAACGGACCAACGCGATGCGATGTTTTCCAACTCC AACAAGGTACAGTAGTACAGCAGTGTGCCTGCTATTTATCCTACGCTATC ACTGATTTTGGGATACAGCAGCGACTCACGGCGCTGGGCAGGATTCCCCA CGCTACCGCCATGATAGGTAATGAAAGTACCGCCATGATAGGTAATGAGA GAATCACCACGATGCCGCCCTCCCCGTCAGATGGTGGAATCAGACGTCAA GGAGGACTTCGTCAAGAATATCGCCGCCACGCTCGACTGGGAGGCACTAT GTAAGGCGGCATCTGAGGTGAGCACCCTCTCGTCAATACCAATTGTCATC ATTCATGCGTCATGCGATTGGATGGTTCTGCAGTAGCAGAAATGGGAACG ATGGAAGCTGCTGTGGAATGTTGTAGTGCCAGCGCGTTTGGGAGTTTGTG AGGCAGTCCTTACTCCCAACATCCTTACTTTTAGCTCAAGCATTTTGACG AGATAACTTGCAGGCAGGCGTCAATCAGGTGTCCTACTGCTTGACCTTCC AGAGTGCTATATTTGCCACAAACGACCTCCACCACCTAATATTATTAGTC ATTTCCGATCTCCAATTTAAGGTCTACCGAGTTTACTGGAAGGGGCTCCA ACTATGGCTCCCATGCTTCATACAAATACTTGTGCATATTCGGGGTGCTC TCTTGCAGGTTGGTATGCCTGAGGGTTCTCTGCCCCCGGCCCTGACCCCG GAGCTGTTGCACGACTCTTCTTTCATCGAGGCGTTGCATCGGGTACTGAT GGACATGCACGTCGTCGAGGGCACTCTCGTCTGTCCGGAAACAGGAAGGC GCTTCCCCATAACGGAAGGCGTTCCGAACCTCATGTGA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig115:540482..545669-

>mRNA_A-nodosum_M_contig115.45.1 ID=mRNA_A-nodosum_M_contig115.45.1|Name=mRNA_A-nodosum_M_contig115.45.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig115:540482..545669- (Ascophyllum nodosum dioecious)
ATGCGCTTACTAACTCATAACGTGCTTCGGTCGCCGATGAAGGAGGTGGA
GAACGGGTATCCCTTACGCATTGAAGCCACCGATGTCCAGATGGTGGAAT
CAGACGTCAAGGAGGACTTCGTCAAGAATATCGCCGCCACGCTCGACTGG
GAGGCACTATGTAAGGCGGCATCTGAGGTTGGTATGCCTGAGGGTTCTCT
GCCCCCGGCCCTGACCCCGGAGCTGTTGCACGACTCTTCTTTCATCGAGG
CGTTGCATCGGGTACTGATGGACATGCACGTCGTCGAGGGCACTCTCGTC
TGTCCGGAAACAGGAAGGCGCTTCCCCATAACGGAAGGCGTTCCGAACCT
CATGTGA
back to top