mRNA_A-nodosum_M_contig115.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig115.15.1
Unique NamemRNA_A-nodosum_M_contig115.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig115.15.1 vs. uniprot
Match: A0A6H5KLW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLW1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.200e-12
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    4 FHTSYGYVYDKLLRSTAKQLGVVLEGSLRECKGCSAAKGLGKPIGRITATRAE 162
            FH ++G+ ++ LLR+TAKQ G  L G LREC GCS AKGL KPI   T+TRA+
Sbjct:   10 FHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAD 62
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BLAST of mRNA_A-nodosum_M_contig115.15.1 vs. uniprot
Match: A0A6H5J5T9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5T9_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.220e-10
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    4 FHTSYGYVYDKLLRSTAKQLGVVLEGSLRECKGCSAAKGLGKPIGRITATRAE 162
            FH ++G+ ++ LLR+TAKQ G  L G LREC GCS AKGL KPI   T+TRAE
Sbjct:  405 FHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPDKTSTRAE 457
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BLAST of mRNA_A-nodosum_M_contig115.15.1 vs. uniprot
Match: A0A6H5JV61_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV61_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.120e-10
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 MFHTSYGYVYDKLLRSTAKQLGVVLEGSLRECKGCSAAKGLGKPIGRITATRAE 162
            +FH  +G+ ++ LLR+TAKQ G  L G LREC+GCS AKGL KPI   T+TRA 
Sbjct:  565 IFHCPHGHSHEVLLRTTAKQQGTTLVGELRECQGCSTAKGLSKPIPNKTSTRAS 618
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BLAST of mRNA_A-nodosum_M_contig115.15.1 vs. uniprot
Match: A0A6H5KPC5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.900e-10
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    4 FHTSYGYVYDKLLRSTAKQLGVVLEGSLRECKGCSAAKGLGKPIGRITATRA 159
            FH ++G+ ++ LL++TAKQ GV L G LREC GCS AKGL KPI   T+TRA
Sbjct:  429 FHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 480
[Close]
BLAST of mRNA_A-nodosum_M_contig115.15.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.210e-10
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    4 FHTSYGYVYDKLLRSTAKQLGVVLEGSLRECKGCSAAKGLGKPIGRITATRA 159
            FH ++G+ ++ LL++TAKQ GV L G LREC GCS AKGL KPI   T+TRA
Sbjct:  627 FHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 678
[Close]
BLAST of mRNA_A-nodosum_M_contig115.15.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.280e-10
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    4 FHTSYGYVYDKLLRSTAKQLGVVLEGSLRECKGCSAAKGLGKPIGRITATRA 159
            FH ++G+ ++ LL++TAKQ GV L G LREC GCS AKGL KPI   T+TRA
Sbjct: 1007 FHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 1058
[Close]
BLAST of mRNA_A-nodosum_M_contig115.15.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.310e-10
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    4 FHTSYGYVYDKLLRSTAKQLGVVLEGSLRECKGCSAAKGLGKPIGRITATRA 159
            FH ++G+ ++ LL++TAKQ GV L G LREC GCS AKGL KPI   T+TRA
Sbjct: 1017 FHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 1068
[Close]
BLAST of mRNA_A-nodosum_M_contig115.15.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.310e-10
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    4 FHTSYGYVYDKLLRSTAKQLGVVLEGSLRECKGCSAAKGLGKPIGRITATRA 159
            FH ++G+ ++ LL++TAKQ GV L G LREC GCS AKGL KPI   T+TRA
Sbjct: 1105 FHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 1156
[Close]
BLAST of mRNA_A-nodosum_M_contig115.15.1 vs. uniprot
Match: A0A6H5KSX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.480e-10
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 FHTSYGYVYDKLLRSTAKQLGVVLEGSLRECKGCSAAKGLGKPIGRITATRA 159
            FH ++G+ ++ LLR+TAKQ G  L G LREC GCS AKGL KPI   T+TRA
Sbjct:  135 FHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRA 186
[Close]
BLAST of mRNA_A-nodosum_M_contig115.15.1 vs. uniprot
Match: A0A6H5KSW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW3_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.470e-10
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 FHTSYGYVYDKLLRSTAKQLGVVLEGSLRECKGCSAAKGLGKPIGRITATRA 159
            FH ++G+ ++ LLR+TAKQ G  L G LREC GCS AKGL KPI   T+TRA
Sbjct:   25 FHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLLKPIPNKTSTRA 76
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig115.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLW1_9PHAE5.200e-1258.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5T9_9PHAE2.220e-1060.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JV61_9PHAE3.120e-1057.41CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KPC5_9PHAE3.900e-1059.62Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K4H5_9PHAE4.210e-1059.62CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5L715_9PHAE4.280e-1059.62CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LGF7_9PHAE4.310e-1059.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNN1_9PHAE4.310e-1059.62CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KSX8_9PHAE4.480e-1059.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSW3_9PHAE5.470e-1059.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig115contigA-nodosum_M_contig115:159384..159767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size384
Hectar predicted targeting categoryother localisation
Exons1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866553.4773607-CDS-A-nodosum_M_contig115:159383..1596351680866553.4773607-CDS-A-nodosum_M_contig115:159383..159635Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig115 159384..159635 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866553.4863737-UTR-A-nodosum_M_contig115:159635..1597671680866553.4863737-UTR-A-nodosum_M_contig115:159635..159767Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig115 159636..159767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig115.15.1prot_A-nodosum_M_contig115.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig115 159384..159635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig115.15.1

>prot_A-nodosum_M_contig115.15.1 ID=prot_A-nodosum_M_contig115.15.1|Name=mRNA_A-nodosum_M_contig115.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=84bp
MFHTSYGYVYDKLLRSTAKQLGVVLEGSLRECKGCSAAKGLGKPIGRITA
TRAEGIWSFVRRHYLLRRACCVDGRKTIHAANL*
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mRNA from alignment at A-nodosum_M_contig115:159384..159767+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig115.15.1 ID=mRNA_A-nodosum_M_contig115.15.1|Name=mRNA_A-nodosum_M_contig115.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at A-nodosum_M_contig115:159384..159767+ (Ascophyllum nodosum dioecious)
ATGTTTCACACGTCCTACGGATATGTATACGATAAACTGCTCCGTTCGAC
AGCCAAACAGCTCGGGGTAGTTCTTGAGGGATCCTTGAGGGAGTGCAAGG
GATGCTCGGCCGCTAAAGGTCTTGGCAAACCGATCGGCAGGATAACTGCG
ACAAGAGCCGAAGGTATTTGGTCGTTTGTTCGTCGACATTATTTGTTAAG
AAGAGCCTGCTGCGTCGATGGTAGGAAAACTATACATGCTGCTAATCTGT
GATGACTTCTCGCGTTTCACGTCGACGTACTTTATGCGCCAAAAGTCCGG
TACAGCTGCTCTTTTTGAACAGTCTATGGCAGACGAATGCGTGACAGGAA
ACCCCTCAGCAGTAGAAGTGGTACGTTTGGATGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig115:159384..159767+

>mRNA_A-nodosum_M_contig115.15.1 ID=mRNA_A-nodosum_M_contig115.15.1|Name=mRNA_A-nodosum_M_contig115.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at A-nodosum_M_contig115:159384..159767+ (Ascophyllum nodosum dioecious)
ATGTTTCACACGTCCTACGGATATGTATACGATAAACTGCTCCGTTCGAC
AGCCAAACAGCTCGGGGTAGTTCTTGAGGGATCCTTGAGGGAGTGCAAGG
GATGCTCGGCCGCTAAAGGTCTTGGCAAACCGATCGGCAGGATAACTGCG
ACAAGAGCCGAAGGTATTTGGTCGTTTGTTCGTCGACATTATTTGTTAAG
AAGAGCCTGCTGCGTCGATGGTAGGAAAACTATACATGCTGCTAATCTGT
GA
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