mRNA_A-nodosum_M_contig11487.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11487.1.1
Unique NamemRNA_A-nodosum_M_contig11487.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig11487.1.1 vs. uniprot
Match: A0A6H5KVS5_9PHAE (GUN4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.090e-40
Identity = 62/72 (86.11%), Postives = 69/72 (95.83%), Query Frame = 2
Query:   95 RGDFENFCRRIGWTTTNSEVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTE*QWK 310
            +GDFENFCRRIGWTT ++EVERKLRWFGANEFIYDVD+AP+GHLPLTSALRGTTLLKELM HPVW+TE +WK
Sbjct:  186 KGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK 257          
BLAST of mRNA_A-nodosum_M_contig11487.1.1 vs. uniprot
Match: A0A836C7C7_9STRA (GUN4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7C7_9STRA)

HSP 1 Score: 130 bits (327), Expect = 8.850e-36
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 2
Query:   89 RRRGDFENFCRRIGWTTTNSEVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTE 298
            R++GDFENFCR IGW T + E+ERKLRWFGANEFIYD ++APKGHLPLTSALRGT LLKEL+ HPVW+TE
Sbjct:  152 RKKGDFENFCRTIGWNTKSEEIERKLRWFGANEFIYDAERAPKGHLPLTSALRGTQLLKELLNHPVWETE 221          
BLAST of mRNA_A-nodosum_M_contig11487.1.1 vs. uniprot
Match: A0A8J9TSA2_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TSA2_PHATR)

HSP 1 Score: 123 bits (309), Expect = 2.330e-34
Identity = 52/72 (72.22%), Postives = 63/72 (87.50%), Query Frame = 2
Query:   95 RGDFENFCRRIGWTTTNSEVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTE*QWK 310
            +GDFE FCR+IGWT T+ E+ERK RWFGA+EFIYDV KAP+GHLPLTSALRGT+L+K+++ HPVWD E  WK
Sbjct:   46 KGDFEAFCRKIGWTATDGEIERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKQILNHPVWDDE-DWK 116          
BLAST of mRNA_A-nodosum_M_contig11487.1.1 vs. uniprot
Match: A0A1Z5KQ11_FISSO (GUN4 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQ11_FISSO)

HSP 1 Score: 125 bits (314), Expect = 8.480e-34
Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = 2
Query:   95 RGDFENFCRRIGWTTTNSEVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTE*QWK 310
            +GDFE FCR+IGWTTT+ EVERK RWFGA+EFIYDV KAP+GHLPLTSALRGT+L+K L+ HPVWD E  WK
Sbjct:  154 KGDFEVFCRKIGWTTTDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKSLLKHPVWDNE-DWK 224          
BLAST of mRNA_A-nodosum_M_contig11487.1.1 vs. uniprot
Match: A0A7R9YVG1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YVG1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.400e-33
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 2
Query:   95 RGDFENFCRRIGWTTTNSEVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTE*QWK 310
            +GDFE FCR+IGWTTT+ EVERK RWFGA+EF YDV KAP+GHLPLTSALRGT+L+KEL+THPVW+ +  WK
Sbjct:  158 KGDFEVFCRKIGWTTTDGEVERKKRWFGASEFTYDVKKAPEGHLPLTSALRGTSLIKELLTHPVWEND-DWK 228          
BLAST of mRNA_A-nodosum_M_contig11487.1.1 vs. uniprot
Match: A0A7S1XQG5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQG5_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.450e-32
Identity = 49/68 (72.06%), Postives = 62/68 (91.18%), Query Frame = 2
Query:   95 RGDFENFCRRIGWTTTNSEVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTE 298
            +G F+NFCR+IGW T + E+ERKL+WFGANEFIYD++KAPKGHLPLT+ALRGT LL+ L++HPVW+TE
Sbjct:  142 KGSFDNFCRKIGWNTKDGEIERKLKWFGANEFIYDLEKAPKGHLPLTAALRGTPLLERLISHPVWETE 209          
BLAST of mRNA_A-nodosum_M_contig11487.1.1 vs. uniprot
Match: A0A6S8ZHG1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZHG1_9STRA)

HSP 1 Score: 120 bits (302), Expect = 6.610e-32
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 2
Query:   95 RGDFENFCRRIGWTTTNSEVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTE 298
            + DFE FCR+IGWTT + EVERK RWFGA+EFIYDV KAP+GHLPLTSALRGT+L+KEL+ HPVWD +
Sbjct:  160 KNDFEAFCRKIGWTTKDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKELLNHPVWDND 227          
BLAST of mRNA_A-nodosum_M_contig11487.1.1 vs. uniprot
Match: A0A7S2P4E3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P4E3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 7.100e-32
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 2
Query:   95 RGDFENFCRRIGWTTTNSEVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTE*QWK 310
            +GDFE FCR+IGWTT + EVERK RWFGA+EFIYDV KAP+GHLPLTSALRGT L+K L+ HPVW+ +  WK
Sbjct:  151 KGDFEAFCRKIGWTTQDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTPLIKNLLNHPVWEND-DWK 221          
BLAST of mRNA_A-nodosum_M_contig11487.1.1 vs. uniprot
Match: A0A7S2UF66_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF66_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.230e-31
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 2
Query:   95 RGDFENFCRRIGWTTTNSEVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTE*QWK 310
            +GDFE FC +IGWTT + +VERK RWFGA+EFIYDV KAP+GHLPLTSALRGT+LLK+++ HPVWD +  WK
Sbjct:  159 KGDFEAFCSKIGWTTKDGDVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLLKQMLNHPVWDND-DWK 229          
BLAST of mRNA_A-nodosum_M_contig11487.1.1 vs. uniprot
Match: A0A7S2R3S6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3S6_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.490e-31
Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = 2
Query:   95 RGDFENFCRRIGWTTTNSEVERKLRWFGANEFIYDVDKAPKGHLPLTSALRGTTLLKELMTHPVWDTE*QWK 310
            + DFE FCR+IGWTT + +VERK RWFGA+EFIYDV KAP+GHLPLTSALRGT+L+K+L+THPVW+ +  WK
Sbjct:  167 KNDFEVFCRKIGWTTKDGDVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKQLLTHPVWEND-DWK 237          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11487.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVS5_9PHAE1.090e-4086.11GUN4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836C7C7_9STRA8.850e-3678.57GUN4 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A8J9TSA2_PHATR2.330e-3472.22Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A1Z5KQ11_FISSO8.480e-3476.39GUN4 domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7R9YVG1_9STRA1.400e-3375.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1XQG5_9STRA1.450e-3272.06Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6S8ZHG1_9STRA6.610e-3275.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2P4E3_9STRA7.100e-3272.22Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2UF66_9STRA1.230e-3170.83Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2R3S6_9STRA1.490e-3170.83Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11487contigA-nodosum_M_contig11487:4435..5277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size322
Hectar predicted targeting categoryother localisation
Exons2
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866553.072897-CDS-A-nodosum_M_contig11487:4434..45851680866553.072897-CDS-A-nodosum_M_contig11487:4434..4585Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11487 4435..4585 +
1680866553.08262-CDS-A-nodosum_M_contig11487:5107..52771680866553.08262-CDS-A-nodosum_M_contig11487:5107..5277Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11487 5108..5277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11487.1.1prot_A-nodosum_M_contig11487.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11487 4435..5277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11487.1.1

>prot_A-nodosum_M_contig11487.1.1 ID=prot_A-nodosum_M_contig11487.1.1|Name=mRNA_A-nodosum_M_contig11487.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp
ARIWQLWKTCGSSTAMANSGTASRETFGVKTKGRLRKLLPSDRLDHHQLG
GRTQVAMVRRERVYLRRRQGPQRTPAPYECLERHHATQGAHDASCLGHGV
AMEIII*
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mRNA from alignment at A-nodosum_M_contig11487:4435..5277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11487.1.1 ID=mRNA_A-nodosum_M_contig11487.1.1|Name=mRNA_A-nodosum_M_contig11487.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=843bp|location=Sequence derived from alignment at A-nodosum_M_contig11487:4435..5277+ (Ascophyllum nodosum dioecious)
GCGCGGATATGGCAACTATGGAAAACTTGTGGATCAAGTACAGCGATGGC AAATTCGGGTACAGCGTCCAGAGAGACCTTTGGCGTAAAGACGAAGGGGA GACTTCGAAAACTTCTGCCGTCGGATCGGCTGGACCACCACCAACTCGGA GGTGCCACCGGTTTACGCGGCCTTCTAGTTTCGTGAATCGTGCTGATATT AGATTTAAGACATGGCATACAGTACTGAGCTATTGTTTCATTGTTTGTAA CCTTGCTCTTTGCGGTTCGCAGTACCTGTAAACCCCCAAAGCACGCGCTC TGCTCTAACTGTGTGCGATGAGCGTGTGCGACGAGCGATGAAGTAATAGA GTAGTCGCGTTTGGCATTGCTTCGTTCTCTTGGTGGATTCGGGGTTTCGA GCTTTAGTCACTGAAATTTATACAGTTGCGCGATCGCCGAATCAATCGAA ATTCTAGTGGCTTATAATGCGTGCAACCCTCGACGAAGGTCGCTCCCTCC CGCAGCTGCAGCACATCGTGCGGACGGCCTACCGATCCTGCCATTTAGTT GTCTCCATTACTGCCGTTGAAAATGAAAACATTTTCCGGACTCCACGTAT TCCGAACCTGGCCCCAACCGTTGTGCCCTCCACGCCCCAACCGTTGTGCG TCTGACTAAAACTCTATTGATAGGTCGAACGCAAGTTGCGATGGTTCGGC GCGAACGAGTTTATCTACGACGTCGACAAGGCCCCCAAAGGACACCTGCC CCTTACGAGTGCCTTGAGAGGCACCACGCTACTCAAGGAGCTCATGACGC ATCCTGTTTGGGACACGGAGTAGCAATGGAAATAATAATCTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11487:4435..5277+

>mRNA_A-nodosum_M_contig11487.1.1 ID=mRNA_A-nodosum_M_contig11487.1.1|Name=mRNA_A-nodosum_M_contig11487.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig11487:4435..5277+ (Ascophyllum nodosum dioecious)
GCGCGGATATGGCAACTATGGAAAACTTGTGGATCAAGTACAGCGATGGC
AAATTCGGGTACAGCGTCCAGAGAGACCTTTGGCGTAAAGACGAAGGGGA
GACTTCGAAAACTTCTGCCGTCGGATCGGCTGGACCACCACCAACTCGGA
GGTCGAACGCAAGTTGCGATGGTTCGGCGCGAACGAGTTTATCTACGACG
TCGACAAGGCCCCCAAAGGACACCTGCCCCTTACGAGTGCCTTGAGAGGC
ACCACGCTACTCAAGGAGCTCATGACGCATCCTGTTTGGGACACGGAGTA
GCAATGGAAATAATAATCTAA
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