mRNA_A-nodosum_M_contig1148.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1148.10.1
Unique NamemRNA_A-nodosum_M_contig1148.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1148.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1148contigA-nodosum_M_contig1148:115657..116155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size376
Hectar predicted targeting categorysignal anchor
Exons2
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866551.2619102-CDS-A-nodosum_M_contig1148:115656..1157331680866551.2619102-CDS-A-nodosum_M_contig1148:115656..115733Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1148 115657..115733 +
1680866551.2713227-CDS-A-nodosum_M_contig1148:115857..1161551680866551.2713227-CDS-A-nodosum_M_contig1148:115857..116155Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1148 115858..116155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1148.10.1prot_A-nodosum_M_contig1148.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1148 115657..116155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1148.10.1

>prot_A-nodosum_M_contig1148.10.1 ID=prot_A-nodosum_M_contig1148.10.1|Name=mRNA_A-nodosum_M_contig1148.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=125bp
PRWRFRFFRPRSRRTGLPRWGTTLTRSSPKAFKLNPAAPKWRPASFVPTA
SMEVSVFQAPKPSYRPAAMGHHPHQVGHFCFLTLWSLSFVLLVLSAYRYH
RSLPYNAFRHSNMGHTGHHPRRSS*
back to top

mRNA from alignment at A-nodosum_M_contig1148:115657..116155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1148.10.1 ID=mRNA_A-nodosum_M_contig1148.10.1|Name=mRNA_A-nodosum_M_contig1148.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=499bp|location=Sequence derived from alignment at A-nodosum_M_contig1148:115657..116155+ (Ascophyllum nodosum dioecious)
CCTCGATGGAGGTTTCGGTTTTTCAGGCCCCGAAGCCGTCGTACCGGCCT
GCCGCGATGGGGCACCACCCTCACCAGGTGGGTCATTTTTGTTTCTTGTC
GCTTTGGTCTCTTTCTTTCGTCTTATTAGTCTTGAGCGCATACCGATACC
ATAGATCGCTACCTTATAACGCCTTTCGCCACTCAAACATGGGGCACACA
GGTCATCACCCAAGGCGTTCAAGCTGAATCCAGCGGCTCCGAAATGGAGA
CCCGCCTCGTTTGTCCCGACGGCCTCGATGGAGGTTTCGGTTTTTCAGGC
CCCGAAGCCGTCGTACCGGCCTGCCGCGATGGGGCACCACCCTCACCAGG
TGGGTCATTTTTGTTTCTTGACGCTTTGGTCTCTTTCTTTCGTCTTATTA
GTCTTGAGCGCATACCGATACCATAGATCGCTACCTTATAACGCCTTTCG
CCACTCAAACATGGGTCACACAGGTCATCACCCAAGGCGTTCAAGCTGA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1148:115657..116155+

>mRNA_A-nodosum_M_contig1148.10.1 ID=mRNA_A-nodosum_M_contig1148.10.1|Name=mRNA_A-nodosum_M_contig1148.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=375bp|location=Sequence derived from alignment at A-nodosum_M_contig1148:115657..116155+ (Ascophyllum nodosum dioecious)
CCTCGATGGAGGTTTCGGTTTTTCAGGCCCCGAAGCCGTCGTACCGGCCT
GCCGCGATGGGGCACCACCCTCACCAGGTCATCACCCAAGGCGTTCAAGC
TGAATCCAGCGGCTCCGAAATGGAGACCCGCCTCGTTTGTCCCGACGGCC
TCGATGGAGGTTTCGGTTTTTCAGGCCCCGAAGCCGTCGTACCGGCCTGC
CGCGATGGGGCACCACCCTCACCAGGTGGGTCATTTTTGTTTCTTGACGC
TTTGGTCTCTTTCTTTCGTCTTATTAGTCTTGAGCGCATACCGATACCAT
AGATCGCTACCTTATAACGCCTTTCGCCACTCAAACATGGGTCACACAGG
TCATCACCCAAGGCGTTCAAGCTGA
back to top