mRNA_A-nodosum_M_contig11456.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig11456.1.1 vs. uniprot
Match: A0A6H5KSK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK1_9PHAE) HSP 1 Score: 261 bits (666), Expect = 1.920e-78 Identity = 169/366 (46.17%), Postives = 188/366 (51.37%), Query Frame = 3
Query: 3 GCTLDFFTARDLTEDDRARTSMTKYMSRRNNGNRHLR--GKGPLLSTAGAGQKPATDQGKVLTSTDDERGTATD-------GWSEHHASTVQGAIFQTLARLAMDALAAHRSARENINPRNSQRASNNSPAPNPSSCGFDGAIATAAGAEPSPYHANVNPFATPTFFGVPPSNHSIADRCGSAECEPPVSGVKRSRCFDEREQASKTLSTSVALQDRGAMATSLFLFNEQYVVKPPKSSIEFGWHTDEQEQLAMCIFPPGVPPPVYVSVWLALDDCDAANGCLEVCSQPSWDSQRTRPSVDEDQPGVVCLPSKAGDAVVFLSNLWHRSGPNRTVRPRRVFYSQYATDVIRATPSDPQPLRLAVPCL 1073
GC LDFFT +L EDD ARTSM KYMSRRN G R R G L + P +G S+ G +T GW+E H S V+ IF TLA LA DAL A RSA AD A P SG DRG L LFNEQYVVKPP+SSIEFGWHTDE+EQLAMC+F PG PPVYVSVWLALDDCDA NGCLEV Q +++ PS +ED VVCLP+KAGDAVVFLSNLWHRSGPN+T PRRVFY+QY D IRA PSDP+PL LAVPC+
Sbjct: 49 GCALDFFTNNELPEDDEARTSMAKYMSRRN-GRRRRRTPGGNDLHPSVEKAPPPGDSRGASRDSSGTMSGLSTTSPSCGGGGWTERHLSVVRDTIFGTLAALAWDALKAERSA--------------------------------------------------------------AADE-DDALRNPDASGAG----------------------DRG----ELLLFNEQYVVKPPRSSIEFGWHTDEREQLAMCVFAPGAGPPVYVSVWLALDDCDAVNGCLEVYPQARNQTRQQTPS-EEDDASVVCLPAKAGDAVVFLSNLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCM 323
BLAST of mRNA_A-nodosum_M_contig11456.1.1 vs. uniprot
Match: D7FYI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI8_ECTSI) HSP 1 Score: 170 bits (431), Expect = 3.540e-46 Identity = 80/113 (70.80%), Postives = 90/113 (79.65%), Query Frame = 3
Query: 735 MCIFPPGVPPPVYVSVWLALDDCDAANGCLEVCSQPSWDSQRTRPSVDEDQPGVVCLPSKAGDAVVFLSNLWHRSGPNRTVRPRRVFYSQYATDVIRATPSDPQPLRLAVPCL 1073
MC+F PG PPVYVSVWLALDDCDA NGCLEV Q +++ PS +ED VVCLP+KAGDAVVFLSNLWHRSGPN+T PRRVFY+QY D IRA PSDP+PL LAVPC+
Sbjct: 1 MCVFAPGARPPVYVSVWLALDDCDAVNGCLEVYPQARDQTRQQTPS-EEDDACVVCLPAKAGDAVVFLSNLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCM 112
BLAST of mRNA_A-nodosum_M_contig11456.1.1 vs. uniprot
Match: A0A329RNE0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RNE0_9STRA) HSP 1 Score: 138 bits (348), Expect = 6.940e-34 Identity = 72/177 (40.68%), Postives = 97/177 (54.80%), Query Frame = 3
Query: 555 RSRCFDEREQASKTLSTSVALQDRGAMATSLFLFNEQYVVKPPKSSIEFGWHTDEQEQLAMCIFPPGVPPPVYVSVWLALDDCDAANGCLEVCSQPSWDSQRTRPSVDEDQPGVVC-----LPSKAGDAVVFLSNLWHRSGPNRTVRPRRVFYSQYATDVIRATPSDPQPLRLAVPC 1070
+S+ D AS A+ + + +F FNE YVVKPP+S +EF WH D+ EQLAMC+ +PP YVS W ALDD NG L+ S ++ D+ + C + +KAGD + FLSN+WH S N + PRR FY+QY+ + I A P DP PL A+PC
Sbjct: 100 KSKFVDVEMFASLLFEKLPAIAGQLMASCDMFFFNEHYVVKPPRSHVEFRWHRDDDEQLAMCVHRDEIPP--YVSAWCALDDVAEVNGALQFVSLDAFSGS--------DEENLKCHASEPVAAKAGDVLFFLSNVWHYSSSNESDGPRRAFYAQYSRERITARPKDPSPLSFAIPC 266
BLAST of mRNA_A-nodosum_M_contig11456.1.1 vs. uniprot
Match: A0A2P4YTF9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YTF9_9STRA) HSP 1 Score: 136 bits (342), Expect = 6.130e-33 Identity = 68/154 (44.16%), Postives = 90/154 (58.44%), Query Frame = 3
Query: 609 VALQDRGAMATSLFLFNEQYVVKPPKSSIEFGWHTDEQEQLAMCIFPPGVPPPVYVSVWLALDDCDAANGCLEVCSQPSWDSQRTRPSVDEDQPGVVCLPSKAGDAVVFLSNLWHRSGPNRTVRPRRVFYSQYATDVIRATPSDPQPLRLAVPC 1070
+A +D T +F FNE YVVKPP+S +EF WH D+ EQLAMC+ + P YVS W ALDD + NG L+ S PS DE+ + +KAGD + F+SN+WH S N + RR FY+QY+ + I A P+D PL A+PC
Sbjct: 150 MAARDESQTKTGIFFFNEHYVVKPPRSQVEFRWHRDDDEQLAMCVHRESIHP--YVSAWCALDDVTSLNGALQFVSLDV-------PSGDEESFFSEPVTAKAGDVIFFMSNVWHCSSSNESDGVRRAFYAQYSHETITARPNDSAPLSFAIPC 294
BLAST of mRNA_A-nodosum_M_contig11456.1.1 vs. uniprot
Match: H3GIQ3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GIQ3_PHYRM) HSP 1 Score: 132 bits (332), Expect = 1.540e-31 Identity = 65/142 (45.77%), Postives = 83/142 (58.45%), Query Frame = 3
Query: 645 LFLFNEQYVVKPPKSSIEFGWHTDEQEQLAMCIFPPGVPPPVYVSVWLALDDCDAANGCLEVCSQPSWDSQRTRPSVDEDQPGVVCLPSKAGDAVVFLSNLWHRSGPNRTVRPRRVFYSQYATDVIRATPSDPQPLRLAVPC 1070
+F FNE YVVKPPKS +EF WH D+ EQLAMC+ + P YVS W ALDD +ANG L+ S +P+KAGD + FLSN+WH S N + PRR FY+QY+++ I A P + PL A+PC
Sbjct: 133 VFFFNEHYVVKPPKSHVEFRWHRDDDEQLAMCVDRETIRP--YVSAWCALDDVSSANGALQFVSLDESGDLGEETVEKLQLRACAPVPAKAGDVLFFLSNVWHCSSSNESDAPRRAFYAQYSSEKITARPKEVTPLSFAIPC 272
BLAST of mRNA_A-nodosum_M_contig11456.1.1 vs. uniprot
Match: A0A5D6Y8T2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8T2_9STRA) HSP 1 Score: 134 bits (338), Expect = 4.260e-31 Identity = 77/188 (40.96%), Postives = 102/188 (54.26%), Query Frame = 3
Query: 588 SKTLSTSVALQDRGAMATSLFLFNEQYVVKPPKSSIEFGWHTDEQEQLAMCIFPPGVPPPVYVSVWLALDDCDAANGCLEVCSQPSWDS-QRTRPSVDEDQPGVVC----------LPSKAGDAVVFLSNLWHRSGPNRTVRPRRVFYSQYATDVIRATPSDPQPLRLAVPCLCMEDRDQKG*RSEAR 1118
SK+ +T+ A+ L+ FNE YVVKPP+S++EF WH D+ EQLAMC+ VPP YVS W ALDD ANG L SQ + T DE+ + C + + AG V FLS++WH S N + RR FY+QY+ I A+ SDP PL A+PCL + +G + AR
Sbjct: 138 SKSDATTRRRVSGAALNDQLYFFNEHYVVKPPRSAVEFRWHQDDAEQLAMCVHRAAVPP--YVSAWCALDDVTTANGPLRFVSQSRLNGVASTWGDSDEEVDSIPCAALDAVASGPIVASAGTVVFFLSDVWHCSSSNGSDAVRRAFYAQYSPVRITASASDPWPLSFAIPCLLPRPAEHQGSSTTAR 323
BLAST of mRNA_A-nodosum_M_contig11456.1.1 vs. uniprot
Match: A0A3M6V7U2_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V7U2_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.340e-30 Identity = 72/188 (38.30%), Postives = 96/188 (51.06%), Query Frame = 3
Query: 609 VALQDRGAMATSLFLFNEQYVVKPPKSSIEFGWHTDEQEQLAMCIFPPGVPPPVYVSVWLALDDCDAANGCLEVCSQPSWDSQRTRPSVDEDQPGVVCLPSK------AGDAVVFLSNLWHRSGPNRTVRPRRVFYSQYATDVIRATPSDPQPLRLAVPCLCMEDRDQKG*RSEARYIFSAIINSSST 1154
+A D+ +AT +F NE YV+KPPKS +EF WH D+ EQLAMC+ + YVSVW ALDD NG L S P D+D L + AGD V FLSN+WH S N + RR FY+QY+ + I + P DP PL A+PC+ + A ++ + S+T
Sbjct: 121 LAAFDKSEVATDMFFSNEHYVIKPPKSHVEFRWHRDDDEQLAMCVHRESIH--TYVSVWCALDDVTTVNGPLRFVSL------NVLPESDKDNVESRKLHASGPVTAAAGDVVFFLSNVWHCSSSNESNTFRRAFYAQYSRETITSRPKDPSPLSFAIPCIT----------ASAAWVINGFAEGSAT 290
BLAST of mRNA_A-nodosum_M_contig11456.1.1 vs. uniprot
Match: W2RFZ8_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2RFZ8_PHYPN) HSP 1 Score: 129 bits (324), Expect = 1.900e-30 Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = 3
Query: 621 DRGAMATSLFLFNEQYVVKPPKSSIEFGWHTDEQEQLAMCIFPPGVPPPVYVSVWLALDDCDAANGCLEVCSQPSW---DSQRTRPSVDEDQPGVVCLPSKAGDAVVFLSNLWHRSGPNRTVRPRRVFYSQYATDVIRATPSDPQPLRLAVPC 1070
++ T +F FNE YVVKPP+S +EF WH D+ EQLAMC+ +P Y+S W ALDD NG L+ D + + E + +KAGD + FLSN+WH S N + RR FY+QY+ + I A P+DP PL A+PC
Sbjct: 125 EKAETGTDMFFFNEHYVVKPPRSHVEFRWHRDDDEQLAMCVHRDEIP--AYISAWCALDDVTEVNGALQFVPLDELSGSDEESLKRHASEP------MTAKAGDVLFFLSNVWHFSSSNESDGARRAFYAQYSRERITARPNDPSPLSFAIPC 269
BLAST of mRNA_A-nodosum_M_contig11456.1.1 vs. uniprot
Match: A0A6A4A515_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4A515_9STRA) HSP 1 Score: 128 bits (321), Expect = 6.410e-30 Identity = 65/144 (45.14%), Postives = 83/144 (57.64%), Query Frame = 3
Query: 639 TSLFLFNEQYVVKPPKSSIEFGWHTDEQEQLAMCIFPPGVPPPVYVSVWLALDDCDAANGCLEVCSQPSWDSQRTRPSVDEDQPGVVCLPSKAGDAVVFLSNLWHRSGPNRTVRPRRVFYSQYATDVIRATPSDPQPLRLAVPC 1070
T +F FNE YVVKPPKS +EF WH D+ EQLAM + + P YVS W ALDD ANG L+ S + + + +KAGD + FLSN+WH S N + PRR FY+QY+ + I A P+D PL A+PC
Sbjct: 135 TEVFFFNEHYVVKPPKSHVEFRWHRDDDEQLAMSVHRETIVP--YVSAWCALDDVTEANGALQFVSLDGPSELGNDKVENLQRRASEPVTAKAGDVLFFLSNVWHCSSSNESDAPRRAFYAQYSRERITARPTDAVPLSFAIPC 276
BLAST of mRNA_A-nodosum_M_contig11456.1.1 vs. uniprot
Match: A0A0P1AH32_PLAHL (Phytanoyl-CoA dioxygenase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AH32_PLAHL) HSP 1 Score: 126 bits (316), Expect = 2.340e-29 Identity = 65/149 (43.62%), Postives = 89/149 (59.73%), Query Frame = 3
Query: 639 TSLFLFNEQYVVKPPKSSIEFGWHTDEQEQLAMCIFPPGVPPPVYVSVWLALDDCDAANGCLEVCSQPSWDSQRTRPSVDE-----DQPGVVCLPSKAGDAVVFLSNLWHRSGPNRTVRPRRVFYSQYATDVIRATPSDPQPLRLAVPC 1070
+++F FNE +VVKPP+S +EF WH D+ EQLAMC+ + P Y+S W ALDD ANG L+ S + +R +V+ +P +V KAGD + FLSN+WH S N + RR FY+QY+ + I A P D PL A+PC
Sbjct: 134 SAMFFFNEHFVVKPPRSHVEFRWHRDDDEQLAMCVHRKDISP--YISAWCALDDVTEANGALQFVSLNAL-GERMNENVETLECHASEPVIV----KAGDVIFFLSNVWHSSSSNESNGARRAFYAQYSQEKITARPRDSAPLCHAIPC 275 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11456.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig11456.1.1 >prot_A-nodosum_M_contig11456.1.1 ID=prot_A-nodosum_M_contig11456.1.1|Name=mRNA_A-nodosum_M_contig11456.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=346bp MTKYMSRRNNGNRHLRGKGPLLSTAGAGQKPATDQGKVLTSTDDERGTATback to top mRNA from alignment at A-nodosum_M_contig11456:3970..7014+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig11456.1.1 ID=mRNA_A-nodosum_M_contig11456.1.1|Name=mRNA_A-nodosum_M_contig11456.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3045bp|location=Sequence derived from alignment at A-nodosum_M_contig11456:3970..7014+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig11456:3970..7014+ >mRNA_A-nodosum_M_contig11456.1.1 ID=mRNA_A-nodosum_M_contig11456.1.1|Name=mRNA_A-nodosum_M_contig11456.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at A-nodosum_M_contig11456:3970..7014+ (Ascophyllum nodosum dioecious)back to top |