mRNA_A-nodosum_M_contig1145.16.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1145.16.1 vs. uniprot
Match: D7FIN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN4_ECTSI) HSP 1 Score: 125 bits (313), Expect = 9.910e-30 Identity = 74/142 (52.11%), Postives = 98/142 (69.01%), Query Frame = 3
Query: 48 RGVGDGDGDALATVADVTLGVYSSRVLITPAKVANGLRKLEHAAAILRQRMAKTGRDAEAVLARIRKGKERQETLPEYGE--EVAQKERAWFAREKGANDQALRRMRALCPVGITSLTVQGLEQQAMEAGSLYPRQLSRRLK 467
R V G G AL TV +T V S+R LI PA+ +GL ++ AA L + + KT ++A LAR+ K +ER+E LPEYG+ EVA +E+AWF RE+ AND AL+R R L PVG+T LTV LEQ A++AGSLYPR+L+ R+K
Sbjct: 923 RRVPGGGGSALETVEGITADVCSARELIAPARAKSGLSGIQDAAKTLAEDLRKTRSGSQAALARMEKWRERKEALPEYGQGNEVADQEKAWFEREREANDLALQRTRKLIPVGVTRLTVAELEQHALDAGSLYPRELTLRIK 1064
BLAST of mRNA_A-nodosum_M_contig1145.16.1 vs. uniprot
Match: D7FMC3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC3_ECTSI) HSP 1 Score: 124 bits (310), Expect = 2.410e-29 Identity = 69/131 (52.67%), Postives = 94/131 (71.76%), Query Frame = 3
Query: 75 ALATVADVTLGVYSSRVLITPAKVANGLRKLEHAAAILRQRMAKTGRDAEAVLARIRKGKERQETLPEYGEEVAQKERAWFAREKGANDQALRRMRALCPVGITSLTVQGLEQQAMEAGSLYPRQLSRRLK 467
AL T +T V S+R L+ P + A+GLR +E A + + ++KT RD +A L ++ +ER+E LPE+ + VA +E+AWF RE GAN QALRRMR+L PVG+T LT+ LEQQA++AGSLYPR+LS RLK
Sbjct: 489 ALETAIGITGSVGSARELVAPTQAASGLRGMEAAVKAMAETLSKTRRDCQAALEKMELWRERKEALPEHVKHVAGEEKAWFDREAGANAQALRRMRSLMPVGVTGLTLSELEQQAIDAGSLYPRELSLRLK 619
BLAST of mRNA_A-nodosum_M_contig1145.16.1 vs. uniprot
Match: A0A6H5KD39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD39_9PHAE) HSP 1 Score: 119 bits (298), Expect = 9.740e-28 Identity = 74/144 (51.39%), Postives = 96/144 (66.67%), Query Frame = 3
Query: 48 RGVGDGDGDALATVAD---VTLGVYSSRVLITPAKVANGLRKLEHAAAILRQRMAKTGRDAEAVLARIRKGKERQETLPEYGEEVAQKERAWFAREKGANDQALRRMRALCPVGITSLTVQGLEQQAMEAGSLYPRQLSRRLKV 470
RGV G G AL TV +T V S+R LI P + +GL +E AA L + + KT A LAR+ K +ER+E LPEY +EVA +E+AWF RE+ AN+ AL+R R L PVG+T LTV LEQ A++AGSLYPR+L+ R+KV
Sbjct: 971 RGVPGGGGSALETVEGGKGITADVCSARELIAPTRAKSGLSGIEDAAKTLAEELRKTR--WVAALARMEKWRERKEALPEYAKEVADQEKAWFEREREANEMALQRTRKLIPVGVTRLTVAELEQHALDAGSLYPRELALRIKV 1112
BLAST of mRNA_A-nodosum_M_contig1145.16.1 vs. uniprot
Match: D7FT01_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT01_ECTSI) HSP 1 Score: 118 bits (295), Expect = 2.460e-27 Identity = 67/131 (51.15%), Postives = 90/131 (68.70%), Query Frame = 3
Query: 75 ALATVADVTLGVYSSRVLITPAKVANGLRKLEHAAAILRQRMAKTGRDAEAVLARIRKGKERQETLPEYGEEVAQKERAWFAREKGANDQALRRMRALCPVGITSLTVQGLEQQAMEAGSLYPRQLSRRLK 467
AL TV D+T V +R LI P + NGL+ LE A + + ++KT RD + L + +ER+E LPEY + VA++E+AWF RE AN++ALR MR+L PVG+T LTV LEQ+A++ GSLYPR LS RLK
Sbjct: 381 ALKTVIDITARVGWARELIAPTQAVNGLQDLEAATKAMAEGLSKTRRDCQTALESMELWRERKEALPEYIKHVAKEEKAWFEREAAANEKALRCMRSLIPVGVTGLTVSELEQRAVDGGSLYPRDLSLRLK 511
BLAST of mRNA_A-nodosum_M_contig1145.16.1 vs. uniprot
Match: D7FTS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS2_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.910e-21 Identity = 60/131 (45.80%), Postives = 84/131 (64.12%), Query Frame = 3
Query: 75 ALATVADVTLGVYSSRVLITPAKVANGLRKLEHAAAILRQRMAKTGRDAEAVLARIRKGKERQETLPEYGEEVAQKERAWFAREKGANDQALRRMRALCPVGITSLTVQGLEQQAMEAGSLYPRQLSRRLK 467
AL TV +T V S+R L+ PA+ +GL +E +A + + +++T + R+ETLPEY + ++ +E AWF RE ANDQALR MR+L PVG+T LTV LEQ A++ GSL+PR+LS RLK
Sbjct: 408 ALETVIGITASVGSARELVVPARARSGLDSIEASAKTMSEGLSQTSPRSS-----------RKETLPEYVKHLSDEEAAWFEREADANDQALRSMRSLMPVGVTGLTVAQLEQAAIDGGSLFPRELSLRLK 527
BLAST of mRNA_A-nodosum_M_contig1145.16.1 vs. uniprot
Match: A0A6H5L4G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G1_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 4.360e-15 Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 3
Query: 291 VAQKERAWFAREKGANDQALRRMRALCPVGITSLTVQGLEQQAMEAGSLYPRQLSRRLK 467
VA +ERAWF RE AN+QALRRMR+L PVG+T LT+ LEQ+A++AGSLYPR+LS RLK
Sbjct: 483 VADEERAWFDREAAANEQALRRMRSLMPVGVTGLTLSELEQRAIDAGSLYPRELSARLK 541 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1145.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1145.16.1 >prot_A-nodosum_M_contig1145.16.1 ID=prot_A-nodosum_M_contig1145.16.1|Name=mRNA_A-nodosum_M_contig1145.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=118bp MAKTGRDAEAVLARIRKGKERQETLPEYGEEVAQKERAWFAREKGANDQAback to top mRNA from alignment at A-nodosum_M_contig1145:150528..155662- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1145.16.1 ID=mRNA_A-nodosum_M_contig1145.16.1|Name=mRNA_A-nodosum_M_contig1145.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5135bp|location=Sequence derived from alignment at A-nodosum_M_contig1145:150528..155662- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1145:150528..155662- >mRNA_A-nodosum_M_contig1145.16.1 ID=mRNA_A-nodosum_M_contig1145.16.1|Name=mRNA_A-nodosum_M_contig1145.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at A-nodosum_M_contig1145:150528..155662- (Ascophyllum nodosum dioecious)back to top |