mRNA_A-nodosum_M_contig1144.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1144.17.1
Unique NamemRNA_A-nodosum_M_contig1144.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1144.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1144contigA-nodosum_M_contig1144:205553..207834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1000
Hectar predicted targeting categorymitochondrion
Exons4
Cds size294
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1144.17.1prot_A-nodosum_M_contig1144.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1144 205678..205971 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866549.9882517-UTR-A-nodosum_M_contig1144:205552..2056771680866549.9882517-UTR-A-nodosum_M_contig1144:205552..205677Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1144 205553..205677 -
1680866550.0173645-UTR-A-nodosum_M_contig1144:205971..2060431680866550.0173645-UTR-A-nodosum_M_contig1144:205971..206043Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1144 205972..206043 -
1680866550.0283415-UTR-A-nodosum_M_contig1144:206510..2066281680866550.0283415-UTR-A-nodosum_M_contig1144:206510..206628Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1144 206511..206628 -
1680866550.0362897-UTR-A-nodosum_M_contig1144:206901..2069501680866550.0362897-UTR-A-nodosum_M_contig1144:206901..206950Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1144 206902..206950 -
1680866550.044315-UTR-A-nodosum_M_contig1144:207492..2078341680866550.044315-UTR-A-nodosum_M_contig1144:207492..207834Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1144 207493..207834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866550.0006716-CDS-A-nodosum_M_contig1144:205677..2059711680866550.0006716-CDS-A-nodosum_M_contig1144:205677..205971Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1144 205678..205971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1144.17.1

>prot_A-nodosum_M_contig1144.17.1 ID=prot_A-nodosum_M_contig1144.17.1|Name=mRNA_A-nodosum_M_contig1144.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
MVRALSDPTWRRRSWLVVMRARPRKFPRTRVGQCLKWFVFRRNGTTSDRH
VLPLTLKGTGPVIADLPGGTDDSFQQAVMTTVDLSEEGLFRQLVSYL*
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mRNA from alignment at A-nodosum_M_contig1144:205553..207834-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1144.17.1 ID=mRNA_A-nodosum_M_contig1144.17.1|Name=mRNA_A-nodosum_M_contig1144.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2282bp|location=Sequence derived from alignment at A-nodosum_M_contig1144:205553..207834- (Ascophyllum nodosum dioecious)
CAGGGAGGTGCGGGTAAGGGTAGGAGTGGCGGCGTCGGCGGCCCGATGTG
CGCAATCTGCACCAACGCGGGCAAGCCCGCCAACCACTCCTTTACAGCGT
GCCCTCTCACCGCGTGCCACAAGTGCGGCCAACCCGTACACATCGAGCGC
CACTGCCCCAACTAGAATCAATAGGCAGACGACAGCAGCACTACCGGGAT
GAAAAGAAGGTCCCGGTTAGCACGAGCCGCTTCAGATTAGATCAGCAGGG
GCACGGCTGTAAGCATAGATACCCAGCTCAGTAGAGCAGCTGGGGGTGGA
AGCCCGTGCAGAGTAGGTATTCACATGGCGAGGAAACCAGAGGTAGGGCA
GGAAGCGGTAAGATACACGTCGCATAGCCCCGGCCCCCCTGTTCCGTTTG
GGGTCGTTGATCGTTGATGTTATGACACTTCTACGCGATTTAGTTACCGC
GACTAACGCCGCTTTTACCAGCACTCTGACTGAGACTAATATGTTATCTG
CCTTGTGCCTTCAAGACAAAACACGAAGAATGAGTCTACTACTGTTTCAT
TCCACCACGGAGGTCATGTACTTATCACATGTGGAATTGTAAGGTGTACC
TACGTTTTTCAAATGTGGTTTCCGACGTAAAATAGTCAGCGCTGACTATC
GCGCTACAGTGTGTTCATGTGCTAGTATCAATGGTAGCGTGAGGCATGTA
CTCGTAGCAGACATGCCGCTAGCTCGCTCTAGGCCACCAACACGAAAACA
ACCCACAGTTAAGTCTGAAGCTGTAACTCGTCTTAGCTCGCGGCTGCTTC
GCCGACGAGTCCAACATCACGTATTTTACGCGTTGTCTCTTCTCCCGCGC
ATGACGCTCGCCTCTTGTGTAATCGTTCCTCGAGGTCCAATTTTCTTTGT
CCTCAACGGAGTCGAGTAATGTTGATAGTGACGGTGAGTTCTCGTTTTAT
GCGAAGTCTTCGGTATTTTCCCTCGCCATACCTCCTGCCCCTTTAGTTCG
TTTTTGTGTATAACTTTATTCCCAATTTACATACCAGTGTGTTGCTCCCA
TCATCGGTAAGTACAAAATAACGCTCACCCGCGCTTCTCTTGTTGTAATG
AAAACTAGCTTGCGAGGCCTCCTGAAGTAAGGACCCGCATGTGCATGAAC
GGTATCATTTAGGCTTCATCAGCTCCAGGTTATTTCTCCAAACCCAAACA
ATACAGATAGTGGCATTCGTCATCGACCTGTGGACCTACAGAATCATTTT
CTGGATGGCCATGATCTTACACTCGACTTTCATACTATTCCTCCGGGCCA
ATTTTGCGATCTACGAACGGTGCGGTGAGAAAAAAACTTGCTTTGACTTC
GTTATAAAGCAGCTTTCTTTGATGTTGTGAAACAATCGTTACATAACAAC
CGGAAACCGTTTGTTCTCGCATGACGCAGTCAAAATATAAAATGACTTGT
TTCCGGTCACGCGATCGAAACCTGGGGTGGATTTGGTGTCACAGACCCTC
AGCCCCTATACTGTCTATGTTTAGAGCCTATTGCGGAGAAATAACTTTAT
GGTTTTCTTCGGTATTGTCGACTGACCAAGACCGGATTCGCACATTGATT
CATTCCACTTTGTGCACAGCGATGAAACTTGTTTAATTGCGGCTAAGGAC
TCTCGGTTTCTGATTCATTTACTACATCACAGTCATTTTTTTGCCAAAGA
CCACCAACCCATGATGTAACTGTTGTACAAAACTCATCCCAATTTGAGCC
CCAGACCATTCAGACCATTCCCATGCCCTCTCTACCTACAGGATGTCGAT
GCAACAGGGGGAATCAGTCCTTGTGCAGCATTCAAAGAGAAGCGCCGGAA
TGCTCGCATCCTCATGGTAAGGGCTCTGAGTGATCCAACGTGGAGGCGGC
GATCGTGGCTGGTGGTTATGCGAGCGCGACCAAGGAAGTTTCCGAGGACC
AGAGTGGGGCAATGCTTGAAGTGGTTTGTGTTTCGACGCAACGGCACGAC
AAGTGACAGGCATGTACTGCCCCTAACTCTAAAGGGTACTGGCCCAGTGA
TCGCCGACTTGCCGGGCGGCACTGATGATAGCTTCCAGCAGGCCGTTATG
ACGACGGTTGACCTGTCCGAGGAGGGATTATTCCGACAACTTGTCTCGTA
TCTGTAGGGCTAGAGTTGAATGATAGGGAGCTGGAATGGGGCCCTTGTCA
TGACGGCTTTGTTGAGTGGGGTCCTTTACCGTGTAAGGTTTCCCCGCTGG
TGTAATGGAAGGTCTCTGAGCTGGATGGGTCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1144:205553..207834-

>mRNA_A-nodosum_M_contig1144.17.1 ID=mRNA_A-nodosum_M_contig1144.17.1|Name=mRNA_A-nodosum_M_contig1144.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig1144:205553..207834- (Ascophyllum nodosum dioecious)
ATGGTAAGGGCTCTGAGTGATCCAACGTGGAGGCGGCGATCGTGGCTGGT
GGTTATGCGAGCGCGACCAAGGAAGTTTCCGAGGACCAGAGTGGGGCAAT
GCTTGAAGTGGTTTGTGTTTCGACGCAACGGCACGACAAGTGACAGGCAT
GTACTGCCCCTAACTCTAAAGGGTACTGGCCCAGTGATCGCCGACTTGCC
GGGCGGCACTGATGATAGCTTCCAGCAGGCCGTTATGACGACGGTTGACC
TGTCCGAGGAGGGATTATTCCGACAACTTGTCTCGTATCTGTAG
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