mRNA_A-nodosum_M_contig1144.10.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1144.10.2
Unique NamemRNA_A-nodosum_M_contig1144.10.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1144.10.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1144contigA-nodosum_M_contig1144:147566..147879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size175
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866548.9558525-CDS-A-nodosum_M_contig1144:147565..1476601680866548.9558525-CDS-A-nodosum_M_contig1144:147565..147660Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1144 147566..147660 -
1680866548.9694872-CDS-A-nodosum_M_contig1144:147800..1478791680866548.9694872-CDS-A-nodosum_M_contig1144:147800..147879Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1144 147801..147879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1144.10.2prot_A-nodosum_M_contig1144.10.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1144 147566..147879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1144.10.2

>prot_A-nodosum_M_contig1144.10.2 ID=prot_A-nodosum_M_contig1144.10.2|Name=mRNA_A-nodosum_M_contig1144.10.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=58bp
GLLRETQLPSRIYWELKNSITTNRGAGISAWIILRMAVAPRLVGPAKLWV
RHVKGKS*
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mRNA from alignment at A-nodosum_M_contig1144:147566..147879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1144.10.2 ID=mRNA_A-nodosum_M_contig1144.10.2|Name=mRNA_A-nodosum_M_contig1144.10.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=314bp|location=Sequence derived from alignment at A-nodosum_M_contig1144:147566..147879- (Ascophyllum nodosum dioecious)
GGTCTCCTTCGAGAGACACAACTGCCGTCAAGAATCTACTGGGAGTTGAA
GAACTCCATAACAACTAACCGTGGTGCAGGTGGGTACGACATTGGGCGGA
CAGCCGCCCATTCCCAAGGCTGTGTCCGAGGTTGTGACGAAGCAGTGGCA
CTGCTCCCCCTTGGTAATAGAAAAGAAAGAGAAACTGTCTTCAGTAACCT
GTCTTGACGTGCTGACCAGGAATCTCAGCGTGGATCATCCTTCGGATGGC
GGTTGCCCCGCGACTTGTGGGACCAGCGAAACTTTGGGTGAGACATGTCA
AAGGGAAAAGCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1144:147566..147879-

>mRNA_A-nodosum_M_contig1144.10.2 ID=mRNA_A-nodosum_M_contig1144.10.2|Name=mRNA_A-nodosum_M_contig1144.10.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=174bp|location=Sequence derived from alignment at A-nodosum_M_contig1144:147566..147879- (Ascophyllum nodosum dioecious)
GGTCTCCTTCGAGAGACACAACTGCCGTCAAGAATCTACTGGGAGTTGAA
GAACTCCATAACAACTAACCGTGGTGCAGGAATCTCAGCGTGGATCATCC
TTCGGATGGCGGTTGCCCCGCGACTTGTGGGACCAGCGAAACTTTGGGTG
AGACATGTCAAAGGGAAAAGCTGA
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