mRNA_A-nodosum_M_contig11439.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11439.1.1
Unique NamemRNA_A-nodosum_M_contig11439.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11439.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11439contigA-nodosum_M_contig11439:978..1724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHI4
Model size423
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.59e-11
EggNOG OGsCOG2252@1|root,2QRYA@2759|Eukaryota
Descriptionpurine nucleobase transmembrane transporter activity
Cds size186
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866548.774614-CDS-A-nodosum_M_contig11439:977..11421680866548.774614-CDS-A-nodosum_M_contig11439:977..1142Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11439 978..1142 -
1680866548.8512263-CDS-A-nodosum_M_contig11439:1466..14871680866548.8512263-CDS-A-nodosum_M_contig11439:1466..1487Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11439 1467..1487 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866548.863988-UTR-A-nodosum_M_contig11439:1487..17241680866548.863988-UTR-A-nodosum_M_contig11439:1487..1724Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11439 1488..1724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11439.1.1prot_A-nodosum_M_contig11439.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11439 978..1487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11439.1.1

>prot_A-nodosum_M_contig11439.1.1 ID=prot_A-nodosum_M_contig11439.1.1|Name=mRNA_A-nodosum_M_contig11439.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=62bp
MPKMIVKGSVMSSLAFKGKDWNCIMQTFFNTISILLGILSVLFNMTHFGV
PINAINEVRTT*
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mRNA from alignment at A-nodosum_M_contig11439:978..1724-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11439.1.1 ID=mRNA_A-nodosum_M_contig11439.1.1|Name=mRNA_A-nodosum_M_contig11439.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at A-nodosum_M_contig11439:978..1724- (Ascophyllum nodosum dioecious)
GTTGGGATCGTTGGGGAGCCGACTTTTGCTTTGATGCTTACTCAGGATGA
TTTACCCCGACATAATAATATTAATGATGAATTGAAGCACCGCTGTATTA
GTATGTGCTCCGGATATCTAGAAAATACAACCGATGGGAATCTCCCCTTT
GTCTCCTCGGCGTGCCTGGTAATACAAGGGTCCTAGCGCATTTTGTTACA
ACAAGGGACGCGTGAGGCAGTCAAAGTCTTGTTTGCGATGCCGAAGATGA
TCGTGAAGGTGAGGACCGCAAAGAAAGACTATCTAAAACCGCCTTGATAC
TTCGTAGTAAGCTAACTTTATGTGGGAATACTCGTACGAAGCTCTTTTTA
GCTCAGTTAATTTTACTGCAAATCACATGATGGATGGATAGAAGATGATG
CAGTCGGGAATTCGAGCTTTAGGTAGAAATCTGTAGCATTATAACAGTAT
TGTTAATAGTAGTACTTGAGAGATTGCTATCGGCCACTATGGATTACTGG
CGGCATATATGTAAAAAGAAAGCGCCTCGCTGCAACCAATAAAAACTTTT
CGATGCTTTTTATGACCACAAATCGAGCGCAGGGCAGCGTGATGAGCTCC
CTGGCCTTCAAGGGGAAGGACTGGAACTGCATAATGCAGACCTTCTTCAA
CACTATATCTATACTGCTGGGTATCCTGTCCGTCCTCTTCAACATGACCC
ACTTCGGCGTCCCCATCAACGCCATCAACGAGGTACGCACCACGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11439:978..1724-

>mRNA_A-nodosum_M_contig11439.1.1 ID=mRNA_A-nodosum_M_contig11439.1.1|Name=mRNA_A-nodosum_M_contig11439.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=186bp|location=Sequence derived from alignment at A-nodosum_M_contig11439:978..1724- (Ascophyllum nodosum dioecious)
ATGCCGAAGATGATCGTGAAGGGCAGCGTGATGAGCTCCCTGGCCTTCAA
GGGGAAGGACTGGAACTGCATAATGCAGACCTTCTTCAACACTATATCTA
TACTGCTGGGTATCCTGTCCGTCCTCTTCAACATGACCCACTTCGGCGTC
CCCATCAACGCCATCAACGAGGTACGCACCACGTAG
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