mRNA_A-nodosum_M_contig1143.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1143.3.1
Unique NamemRNA_A-nodosum_M_contig1143.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1143.3.1 vs. uniprot
Match: A0A516ICZ0_9PHAE (ATP-dependent zinc metalloprotease FtsH n=46 Tax=Phaeophyceae TaxID=2870 RepID=A0A516ICZ0_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 3.970e-77
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 1 
Query:    1 ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTPDEQPLLTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNYFFKVNSLARQMVTRFGMS 387
            I+IKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTPDEQPLLTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASN FFKVNSLARQMVTRFGMS
Sbjct:  402 ISIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTPDEQPLLTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNDFFKVNSLARQMVTRFGMS 530
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BLAST of mRNA_A-nodosum_M_contig1143.3.1 vs. uniprot
Match: FTSH_ECTSI (ATP-dependent zinc metalloprotease FtsH n=3 Tax=Ectocarpales TaxID=2877 RepID=FTSH_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 1.540e-76
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 1 
Query:    1 ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTPDEQPLLTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNYFFKVNSLARQMVTRFGMS 387
            ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHAL GTLLKNHDDVQKVTLIPRGRAQGLTWFTPDEQPL+TRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASN FFKVNSLARQMVTRFGMS
Sbjct:  423 ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALTGTLLKNHDDVQKVTLIPRGRAQGLTWFTPDEQPLMTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNDFFKVNSLARQMVTRFGMS 551
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BLAST of mRNA_A-nodosum_M_contig1143.3.1 vs. uniprot
Match: A0A6B7F1L2_9PHAE (ATP-dependent zinc metalloprotease FtsH n=5 Tax=Ectocarpales TaxID=2877 RepID=A0A6B7F1L2_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 4.730e-76
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 1 
Query:    1 ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTPDEQPLLTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNYFFKVNSLARQMVTRFGMS 387
            ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHAL GTLLKNHDDVQKVTLIPRGRAQGLTWFTPDEQPL+TRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASN FFKVN+LARQMVTRFGMS
Sbjct:  421 ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALTGTLLKNHDDVQKVTLIPRGRAQGLTWFTPDEQPLMTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNDFFKVNNLARQMVTRFGMS 549
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BLAST of mRNA_A-nodosum_M_contig1143.3.1 vs. uniprot
Match: A0A8F0F796_9PHAE (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F796_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 1.940e-71
Identity = 116/129 (89.92%), Postives = 125/129 (96.90%), Query Frame = 1 
Query:    1 ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTPDEQPLLTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNYFFKVNSLARQMVTRFGMS 387
            ITIKQIYTAI+RI+AGLEGVLL DS+NKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGR+QGLTWFTPDEQPL+TRGQLS+RLIGTLGGRAAEKVIFG MEIT+GASN  F+VNS+ARQMVTRFGMS
Sbjct:  402 ITIKQIYTAIDRILAGLEGVLLTDSKNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRSQGLTWFTPDEQPLMTRGQLSARLIGTLGGRAAEKVIFGNMEITNGASNDLFQVNSIARQMVTRFGMS 530
[Close]
BLAST of mRNA_A-nodosum_M_contig1143.3.1 vs. uniprot
Match: A0A8E6D6D3_9PHAE (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6D3_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 8.160e-71
Identity = 115/129 (89.15%), Postives = 126/129 (97.67%), Query Frame = 1 
Query:    1 ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTPDEQPLLTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNYFFKVNSLARQMVTRFGMS 387
            IT+KQI TAIERIIAGLEG++L+DSRNKRL+AYHEVGHALAGTLLKNHDDVQKVTLIPRG+AQGLTWFTP+EQPL+TRGQLSSR+IGTL GRAAEKVIFGK+EITSGASN FF+VNSLARQMVTRFGMS
Sbjct:  413 ITLKQINTAIERIIAGLEGIILSDSRNKRLIAYHEVGHALAGTLLKNHDDVQKVTLIPRGQAQGLTWFTPEEQPLMTRGQLSSRIIGTLAGRAAEKVIFGKLEITSGASNDFFQVNSLARQMVTRFGMS 541
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BLAST of mRNA_A-nodosum_M_contig1143.3.1 vs. uniprot
Match: A0A2I4Q2K0_9PHAE (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2K0_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 7.640e-69
Identity = 115/129 (89.15%), Postives = 121/129 (93.80%), Query Frame = 1 
Query:    1 ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTPDEQPLLTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNYFFKVNSLARQMVTRFGMS 387
            I+IKQI  AIERII GLEGV+L DSR+KRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTP+EQPL+TRGQLSSRLIGTL GRAAEKVIFG MEIT+GASN FF VNSLARQMVTRFGMS
Sbjct:  403 ISIKQISAAIERIITGLEGVILTDSRSKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTPEEQPLMTRGQLSSRLIGTLAGRAAEKVIFGNMEITNGASNDFFNVNSLARQMVTRFGMS 531
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BLAST of mRNA_A-nodosum_M_contig1143.3.1 vs. uniprot
Match: M1X2X0_9NOST (Cell division protein FtsH n=1 Tax=Richelia intracellularis HH01 TaxID=1165094 RepID=M1X2X0_9NOST)

HSP 1 Score: 176 bits (446), Expect = 1.690e-51
Identity = 87/130 (66.92%), Postives = 107/130 (82.31%), Query Frame = 1 
Query:    1 ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTP-DEQPLLTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNYFFKVNSLARQMVTRFGMS 387
            IT+ +I  A++R++AG+EG  L DS++KRL+AYHE+GHAL GTLLK HD VQKVTLIPRG+AQGLTWFTP +EQ L+T GQL +R+ G LGGRAAE+VIFG  EIT+GA N   +V  +ARQMVTRFGMS
Sbjct:  159 ITLAEIDDAVDRVVAGMEGTPLVDSKSKRLIAYHEIGHALVGTLLKYHDPVQKVTLIPRGQAQGLTWFTPNEEQGLITHGQLKARITGALGGRAAEEVIFGNAEITTGAGNDLQQVTGMARQMVTRFGMS 288
[Close]
BLAST of mRNA_A-nodosum_M_contig1143.3.1 vs. uniprot
Match: M2VYV5_GALSU (ATP-dependent zinc metalloprotease FtsH n=2 Tax=cellular organisms TaxID=131567 RepID=M2VYV5_GALSU)

HSP 1 Score: 181 bits (458), Expect = 2.670e-51
Identity = 89/130 (68.46%), Postives = 112/130 (86.15%), Query Frame = 1 
Query:    1 ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTP-DEQPLLTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNYFFKVNSLARQMVTRFGMS 387
            IT+ +I  +I+RIIAGLEG +L DS+ KRL+AYHEVGHA+ GTLLKNHD VQKVTLIPRG+A+GLTWFTP +EQ L++RGQ+ +R+I  LGGRA+E+V+FG +EIT+GASN   +V S+ARQMVTRFGMS
Sbjct:  404 ITMSEIDVSIDRIIAGLEGRVLTDSKTKRLIAYHEVGHAIIGTLLKNHDPVQKVTLIPRGQAKGLTWFTPSEEQTLISRGQILARIIAALGGRASEEVVFGNLEITTGASNDLQQVTSMARQMVTRFGMS 533
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BLAST of mRNA_A-nodosum_M_contig1143.3.1 vs. uniprot
Match: FTSH_VAULI (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Vaucheria litorea TaxID=109269 RepID=FTSH_VAULI)

HSP 1 Score: 180 bits (457), Expect = 4.230e-51
Identity = 87/130 (66.92%), Postives = 111/130 (85.38%), Query Frame = 1 
Query:    1 ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTP-DEQPLLTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNYFFKVNSLARQMVTRFGMS 387
            IT+ ++ TAI+R++AGLEG  L D++NKRL+AYHE+GHA+ GTLLK HD+VQKVTLIPRG+A+GLTWF P DEQ L++RGQL +R+IGTLGGRAAE+V+FG  EIT+GASN   ++ +L RQMVTR GMS
Sbjct:  403 ITMSEVNTAIDRLLAGLEGTSLTDTKNKRLIAYHEIGHAVIGTLLKYHDEVQKVTLIPRGQARGLTWFIPNDEQALISRGQLVARIIGTLGGRAAEEVVFGSSEITTGASNDLQQITNLTRQMVTRLGMS 532
[Close]
BLAST of mRNA_A-nodosum_M_contig1143.3.1 vs. uniprot
Match: UPI001A0F5300 (Cell division protein FtsH n=1 Tax=Thermoleptolyngbya sp. M55_K2018_002 TaxID=2747808 RepID=UPI001A0F5300)

HSP 1 Score: 171 bits (432), Expect = 5.590e-51
Identity = 82/130 (63.08%), Postives = 108/130 (83.08%), Query Frame = 1 
Query:    1 ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDDVQKVTLIPRGRAQGLTWFTPDE-QPLLTRGQLSSRLIGTLGGRAAEKVIFGKMEITSGASNYFFKVNSLARQMVTRFGMS 387
            IT+ +I  A++R++AG+EG  L DS++KRL+AYHE+GHA+ GTL+K+HD VQKVTLIPRG+AQGLTWFTP E Q L++R Q+ +R++G LGGRAAE+VIFG  E+T+GA N   +V  +ARQMVTRFGMS
Sbjct:   20 ITMLEIDDAVDRVVAGMEGTPLVDSKSKRLIAYHEIGHAIVGTLVKDHDPVQKVTLIPRGQAQGLTWFTPSEDQALISRSQILARIMGALGGRAAEQVIFGDAEVTTGAGNDLQQVTGMARQMVTRFGMS 149
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1143.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A516ICZ0_9PHAE3.970e-7798.45ATP-dependent zinc metalloprotease FtsH n=46 Tax=P... [more]
FTSH_ECTSI1.540e-7697.67ATP-dependent zinc metalloprotease FtsH n=3 Tax=Ec... [more]
A0A6B7F1L2_9PHAE4.730e-7696.90ATP-dependent zinc metalloprotease FtsH n=5 Tax=Ec... [more]
A0A8F0F796_9PHAE1.940e-7189.92ATP-dependent zinc metalloprotease FtsH n=1 Tax=Pr... [more]
A0A8E6D6D3_9PHAE8.160e-7189.15ATP-dependent zinc metalloprotease FtsH n=1 Tax=Is... [more]
A0A2I4Q2K0_9PHAE7.640e-6989.15ATP-dependent zinc metalloprotease FtsH n=1 Tax=Di... [more]
M1X2X0_9NOST1.690e-5166.92Cell division protein FtsH n=1 Tax=Richelia intrac... [more]
M2VYV5_GALSU2.670e-5168.46ATP-dependent zinc metalloprotease FtsH n=2 Tax=ce... [more]
FTSH_VAULI4.230e-5166.92ATP-dependent zinc metalloprotease FtsH n=1 Tax=Va... [more]
UPI001A0F53005.590e-5163.08Cell division protein FtsH n=1 Tax=Thermoleptolyng... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1143contigA-nodosum_M_contig1143:51595..51981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D1J722
Preferred nameftsH
PFAMsAAA,FtsH_ext,Peptidase_M41
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K03798
KEGG ModuleM00742
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009657,GO:0009658,GO:0009668,GO:0009719,GO:0009725,GO:0009735,GO:0009765,GO:0009892,GO:0009941,GO:0009987,GO:0010027,GO:0010033,GO:0010109,GO:0010205,GO:0010206,GO:0010304,GO:0015979,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0019684,GO:0022607,GO:0030091,GO:0030163,GO:0031323,GO:0031324,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0034622,GO:0042221,GO:0042548,GO:0042623,GO:0042651,GO:0043155,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043467,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048564,GO:0050789,GO:0050794,GO:0050896,GO:0055035,GO:0061024,GO:0065003,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0072593,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1905156
Exons1
Evalue2.53e-77
EggNOG OGsCOG0465@1|root,KOG0731@2759|Eukaryota
Descriptionmetalloendopeptidase activity
Cds size387
COG categoryO
BRITEko00000,ko00002,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866548.7429514-CDS-A-nodosum_M_contig1143:51594..519811680866548.7429514-CDS-A-nodosum_M_contig1143:51594..51981Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1143 51595..51981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1143.3.1prot_A-nodosum_M_contig1143.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1143 51595..51981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1143.3.1

>prot_A-nodosum_M_contig1143.3.1 ID=prot_A-nodosum_M_contig1143.3.1|Name=mRNA_A-nodosum_M_contig1143.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=129bp
ITIKQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGHALAGTLLKNHDD
VQKVTLIPRGRAQGLTWFTPDEQPLLTRGQLSSRLIGTLGGRAAEKVIFG
KMEITSGASNYFFKVNSLARQMVTRFGMS
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mRNA from alignment at A-nodosum_M_contig1143:51595..51981-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1143.3.1 ID=mRNA_A-nodosum_M_contig1143.3.1|Name=mRNA_A-nodosum_M_contig1143.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at A-nodosum_M_contig1143:51595..51981- (Ascophyllum nodosum dioecious)
ATAACTATTAAACAAATATATACAGCAATTGAAAGAATTATCGCTGGATT
AGAGGGAGTTTTATTAAATGATTCAAGAAACAAAAGATTAGTAGCTTATC
ATGAAGTTGGGCACGCTTTAGCAGGTACATTACTCAAAAATCATGATGAT
GTTCAAAAAGTAACATTAATTCCCAGAGGACGTGCGCAAGGATTAACTTG
GTTTACACCAGATGAGCAACCTCTTCTGACACGTGGTCAATTGTCATCAA
GATTAATAGGAACACTTGGAGGTCGAGCAGCTGAAAAAGTTATTTTTGGA
AAAATGGAAATTACTAGTGGAGCAAGTAATTACTTTTTTAAAGTAAATTC
TTTAGCAAGACAAATGGTTACAAGATTTGGTATGTCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1143:51595..51981-

>mRNA_A-nodosum_M_contig1143.3.1 ID=mRNA_A-nodosum_M_contig1143.3.1|Name=mRNA_A-nodosum_M_contig1143.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=387bp|location=Sequence derived from alignment at A-nodosum_M_contig1143:51595..51981- (Ascophyllum nodosum dioecious)
ATAACTATTAAACAAATATATACAGCAATTGAAAGAATTATCGCTGGATT
AGAGGGAGTTTTATTAAATGATTCAAGAAACAAAAGATTAGTAGCTTATC
ATGAAGTTGGGCACGCTTTAGCAGGTACATTACTCAAAAATCATGATGAT
GTTCAAAAAGTAACATTAATTCCCAGAGGACGTGCGCAAGGATTAACTTG
GTTTACACCAGATGAGCAACCTCTTCTGACACGTGGTCAATTGTCATCAA
GATTAATAGGAACACTTGGAGGTCGAGCAGCTGAAAAAGTTATTTTTGGA
AAAATGGAAATTACTAGTGGAGCAAGTAATTACTTTTTTAAAGTAAATTC
TTTAGCAAGACAAATGGTTACAAGATTTGGTATGTCA
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