mRNA_A-nodosum_M_contig11428.2.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11428.2.2
Unique NamemRNA_A-nodosum_M_contig11428.2.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11428.2.2 vs. uniprot
Match: D7FMM0_ECTSI (DNA repair protein RadA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 6.360e-22
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:   19 QVYLNIVGGLKVQETASDLAVALAIVSSYATVPVRSTERKDTCFVGEIGLGGELRPVQQLDRRIQ 213
            +VYLNIVGGLKVQETA+DLAVALA+VSSY T+PVR     DTCF+GEIGLGGELRPVQQL RRIQ
Sbjct:  581 EVYLNIVGGLKVQETAADLAVALAVVSSYTTIPVRP----DTCFIGEIGLGGELRPVQQLPRRIQ 641
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BLAST of mRNA_A-nodosum_M_contig11428.2.2 vs. uniprot
Match: F6BGE1_THEXL (DNA repair protein RadA n=6 Tax=Thermoanaerobacterium TaxID=28895 RepID=F6BGE1_THEXL)

HSP 1 Score: 75.1 bits (183), Expect = 3.410e-12
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 IYFLLSQVYLNIVGGLKVQETASDLAVALAIVSSYATVPVRSTERKDTCFVGEIGLGGELRPVQQLDRRI 210
            I F  S VYLNI GGLKVQE A+DL +  A++S Y  +P+ +    D CF GE+GL GE+RPV  L+RRI
Sbjct:  342 INFSQSDVYLNIAGGLKVQEPAADLGIVAALISGYLNIPISN----DICFSGEVGLIGEVRPVSNLERRI 407
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BLAST of mRNA_A-nodosum_M_contig11428.2.2 vs. uniprot
Match: A0A2D8UBC9_9BACT (DNA repair protein RadA n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2D8UBC9_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.170e-11
Identity = 34/63 (53.97%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   22 VYLNIVGGLKVQETASDLAVALAIVSSYATVPVRSTERKDTCFVGEIGLGGELRPVQQLDRRI 210
            +++N+VGGL++ E A+DLAV LAI+SS+  +P+RS     T  VGEIGLGGE+RP  Q++RR+
Sbjct:  354 IFVNVVGGLRLDEPAADLAVGLAIISSFRNIPIRSK----TIMVGEIGLGGEIRPXSQVERRV 412
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BLAST of mRNA_A-nodosum_M_contig11428.2.2 vs. uniprot
Match: A0A7S3UQA7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQA7_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 2.570e-11
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:   19 QVYLNIVGGLKVQETASDLAVALAIVSSYATVPVRSTERKDTCFVGEIGLGGELRPVQQLDRRI 210
            +VY+N+VGGLK+QETA+DL++  AIVSS  T P+       T  VGE+GLGGELR V Q++RRI
Sbjct:  256 EVYVNVVGGLKLQETAADLSIIAAIVSSATTTPILGK----TALVGEVGLGGELRIVPQIERRI 315
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BLAST of mRNA_A-nodosum_M_contig11428.2.2 vs. uniprot
Match: A0A800BRF5_9CHLR (DNA repair protein RadA n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A800BRF5_9CHLR)

HSP 1 Score: 72.4 bits (176), Expect = 2.920e-11
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   22 VYLNIVGGLKVQETASDLAVALAIVSSYATVPVRSTERKDTCFVGEIGLGGELRPVQQLDRRI 210
            +++N+VGGLKV E A+DLA+A+AI SSY  VPV +    D   VGEIGL GELR V QL+RR+
Sbjct:  352 IFVNVVGGLKVNEPAADLAIAVAIASSYKNVPVAA----DMAIVGEIGLSGELRAVSQLERRL 410
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BLAST of mRNA_A-nodosum_M_contig11428.2.2 vs. uniprot
Match: A0A7X8BW96_9SPHI (DNA repair protein RadA n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A7X8BW96_9SPHI)

HSP 1 Score: 72.0 bits (175), Expect = 3.940e-11
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   22 VYLNIVGGLKVQETASDLAVALAIVSSYATVPVRSTERKDTCFVGEIGLGGELRPVQQLDRRI 210
            V+ N+ GGLK+ +TA+DL +  A+ SS+   P+++    DTCF GEIGL GE+RPV+QL+RRI
Sbjct:  349 VFFNVAGGLKITDTATDLGIVSALTSSFFDSPIQA----DTCFTGEIGLSGEIRPVRQLERRI 407
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BLAST of mRNA_A-nodosum_M_contig11428.2.2 vs. uniprot
Match: A4SAK3_OSTLU (RECA_2 domain-containing protein (Fragment) n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4SAK3_OSTLU)

HSP 1 Score: 72.0 bits (175), Expect = 4.080e-11
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   22 VYLNIVGGLKVQETASDLAVALAIVSSYATVPVRSTERKDTCFVGEIGLGGELRPVQQLDRRI 210
            V++NIVGG+K+++ ++D+AVALAI SS+   P+      D CF GE+GLGGELRPV Q +RRI
Sbjct:  376 VFINIVGGMKLEDPSTDVAVALAIASSFVEKPLPP----DMCFFGEVGLGGELRPVMQAERRI 434
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BLAST of mRNA_A-nodosum_M_contig11428.2.2 vs. uniprot
Match: L0IGW2_THETR (DNA repair protein RadA n=7 Tax=Thermoanaerobacterium TaxID=28895 RepID=L0IGW2_THETR)

HSP 1 Score: 71.6 bits (174), Expect = 5.330e-11
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   16 SQVYLNIVGGLKVQETASDLAVALAIVSSYATVPVRSTERKDTCFVGEIGLGGELRPVQQLDRRI 210
            S VYLNI GGLKVQE A+DL +  A++S Y  VP+ +    D CF GE+GL GE+R V  L+RRI
Sbjct:  347 SDVYLNIAGGLKVQEPAADLGIVSAVMSGYLNVPISN----DICFSGEVGLTGEVRAVSNLERRI 407
[Close]
BLAST of mRNA_A-nodosum_M_contig11428.2.2 vs. uniprot
Match: A0A519N453_FLASP (DNA repair protein RadA n=4 Tax=Flavobacterium TaxID=237 RepID=A0A519N453_FLASP)

HSP 1 Score: 71.6 bits (174), Expect = 5.360e-11
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:   22 VYLNIVGGLKVQETASDLAVALAIVSSYATVPVRSTERKDTCFVGEIGLGGELRPVQQLDRRIQ 213
            V+LN+ GG+ V + A DLAV  AI+SS   +PV     KD CFVGE+GL GE+RPV ++D+RIQ
Sbjct:  352 VFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVE----KDCCFVGEVGLSGEIRPVNRIDQRIQ 411
[Close]
BLAST of mRNA_A-nodosum_M_contig11428.2.2 vs. uniprot
Match: C1FJ34_MICCC (RECA_2 domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FJ34_MICCC)

HSP 1 Score: 71.6 bits (174), Expect = 5.450e-11
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   10 LLSQVYLNIVGGLKVQETASDLAVALAIVSSYATVPVRSTERKDTCFVGEIGLGGELRPVQQLDRRI 210
            L + V++NIVGG+K+ + ++D+AVALAI SS+   P+      D CF GE+GLGGELRPV Q +RRI
Sbjct:  356 LKNDVFINIVGGMKLDDPSTDVAVALAIASSFVEKPLPP----DMCFFGEVGLGGELRPVMQSERRI 418
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11428.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMM0_ECTSI6.360e-2281.54DNA repair protein RadA n=1 Tax=Ectocarpus silicul... [more]
F6BGE1_THEXL3.410e-1254.29DNA repair protein RadA n=6 Tax=Thermoanaerobacter... [more]
A0A2D8UBC9_9BACT1.170e-1153.97DNA repair protein RadA n=1 Tax=Gemmatimonadetes b... [more]
A0A7S3UQA7_HETAK2.570e-1157.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A800BRF5_9CHLR2.920e-1158.73DNA repair protein RadA n=1 Tax=Anaerolineae bacte... [more]
A0A7X8BW96_9SPHI3.940e-1152.38DNA repair protein RadA n=1 Tax=Sphingobacteriales... [more]
A4SAK3_OSTLU4.080e-1155.56RECA_2 domain-containing protein (Fragment) n=2 Ta... [more]
L0IGW2_THETR5.330e-1155.38DNA repair protein RadA n=7 Tax=Thermoanaerobacter... [more]
A0A519N453_FLASP5.360e-1154.69DNA repair protein RadA n=4 Tax=Flavobacterium Tax... [more]
C1FJ34_MICCC5.450e-1153.73RECA_2 domain-containing protein (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11428contigA-nodosum_M_contig11428:2746..5262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FMM0
PFAMsAAA_25,ChlI,Lon_C
Model size648
Max annot lvl2759|Eukaryota
KEGG koko:K04485
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.84e-25
EggNOG OGsCOG1066@1|root,2QQ01@2759|Eukaryota
DescriptionAAA domain
Cds size255
COG categoryO
BRITEko00000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866547.4079776-UTR-A-nodosum_M_contig11428:2745..31381680866547.4079776-UTR-A-nodosum_M_contig11428:2745..3138Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11428 2746..3138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866547.4212399-CDS-A-nodosum_M_contig11428:3138..32671680866547.4212399-CDS-A-nodosum_M_contig11428:3138..3267Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11428 3139..3267 -
1680866547.429723-CDS-A-nodosum_M_contig11428:5136..52621680866547.429723-CDS-A-nodosum_M_contig11428:5136..5262Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11428 5137..5262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11428.2.2prot_A-nodosum_M_contig11428.2.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11428 3139..5262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11428.2.2

>prot_A-nodosum_M_contig11428.2.2 ID=prot_A-nodosum_M_contig11428.2.2|Name=mRNA_A-nodosum_M_contig11428.2.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
IYFLLSQVYLNIVGGLKVQETASDLAVALAIVSSYATVPVRSTERKDTCF
VGEIGLGGELRPVQQLDRRIQVRCAARRQHSLTK*
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mRNA from alignment at A-nodosum_M_contig11428:2746..5262-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11428.2.2 ID=mRNA_A-nodosum_M_contig11428.2.2|Name=mRNA_A-nodosum_M_contig11428.2.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2517bp|location=Sequence derived from alignment at A-nodosum_M_contig11428:2746..5262- (Ascophyllum nodosum dioecious)
ATTTATTTCCTACTTTCCCAGGTGTACTTGAACATCGTCGGGGGTCTCAA
GGTGCAGGAAACGGCGTCGGATCTCGCTGTGGCACTTGCGATCGTCAGCA
GCTACGCCACCGTGCCCGTGCGATCGGTGAGCGAAAAGCTTGTTCGGAGA
TATGAGGACGTGAAAAATGTGGCGCTGCGCTGAAGTAATACTGTATAGAA
GTATAAAAAGAGGGTATATATAATACAAACTGTAACACTCCAGTAGACTA
GTCAGTGGAAAAAGCTTACGGGCATTTGCCGCACAAAGTTGAAACTCGCG
CAGTATATTCGTGCTGTAGTGTAGTTTATTTTGTCTCGGGGTATTATATT
TTTTCTTTTGTTATTTTTATGGTCATACATATAGCAAGAGTATGGATCAA
CCGGGTAAGGTTGCCAGTCCTGCACGTGGTCAGCTGAACAGGGAAAATGA
AGATTTTCCCTGTCCGCGTTCGCGCCTGAGAATTTGGTGTCGCGAGACAG
GTTCGGCAGTCCTGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGACTG
AATCTGTTGCTTACTTACGGGATTCCTCCCGAGTTCGGCGGCGGCGTCCA
TTTATTTATTTAAAACCGCCATACGCCATCGTGTCAGTCCCGATTTTATC
GGGTCACGCAATTACGTACCGATGGCGATCACTGCCGAGAGTCCGCCGGC
ACAGGGCCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAG
GTCACCATGGACCAATTAATATGCGCCTTTCTTTCCCACACCCACACTAT
CCGTATGAAGTGGACATGTTGAAAATACAGTACCGGCGATTGTAGTGTAG
TGTAGTGCATGATGATAGTGTAATGTAGTGTACGAGATAGTGTAGTGTGT
TGCAGTATAGTGAAGTGTAGGGTATTGTTATATAGTGTAGCGTATGATGA
TAGTGTAATGTAGTGTACGAGATAGTGCAGTGTATTGCAGTATAGTGCAA
GTGTAGGGTAGTGTTATATAGTGTAGTGTATGATGATAGTGTAATGTAGT
GTACGAGATAGTGCAGTGTATTGCAGTATAGTGAAGTGTAGGGTAGTGTT
ATATAGTGTAGTGTAGTGTAGTGCAGTGCAGTAAAGTGTATTATAATGAA
GTGTAGTGTATTTTAGAGCAGTGCAATGTAGTACTCAGGGTACAATTTAA
TGTCGTGTATTGTACTAGTGAAGTGGATTTAACGTAGTGTAGTATACTGT
AGTGTATTTTTTTATTATTATGTTTTTAGTGTTGTGTATTGTATTATAGT
GTAGTATATTTAATAGTATACGAAAAAGTGTAGTGTAGTATCATTGCGGT
TCGGAGCATCGCTAACGAGGTACAATATCTCAGATTTTCCTTGGCGTTTC
GTTTGATAGCGCTTCCTACGGCACATAGACCGTAGATTTCATAGCGGCCT
ATTAAGTACTTCGTAATAGACTACTATAAGCAGACTATTGTTAATAGATA
CTCGACTGTTCCGGTGGTTACATTGTACATTGTACATTATACATCGTGAT
GATTTTATTCTGTAACACGGGCTCTTGCGGCCGCCATCGTGCTTCTTTCG
CCCCCTCCCCCCCTCGAGGCTATAGTTACAACAGTACTACTCCTCATCAT
TATTACCATCCTGACTGCGGTCACTAAGGATCTTCCCACCTCTCCTCGGT
TCACGCCTTACGATTTTTTATCGCGATGCAAGTTCAGCAATTTTACCTAC
TTACATACGTTTCCACGCTTCCCGTTACGGAAGAAAGAACAGGAATCCTA
CTTTTGTAAGAATCGAACTCACGACTTCCGAACTAGCAGGTGTGCAGGTT
ACCTACTAGACCACTCGGGCGACGAACTTACTACAGTATTACTACAGCAT
GACTACCGTATTACTACTGCCTTTCTCATCTCCCCGTCTTTCTTTCTCTT
TCTCTTTCTCTCTATTCCTTTGGGAAACAAACCGAACCGAACCAAACCGA
ACGGAAGGACACGTGCTTTGTCGGAGAAATCGGCCTGGGTGGCGAGCTAC
GGCCCGTACAACAGCTCGACCGGCGGATACAGGTACGGTGCGCAGCAAGA
CGGCAACACTCTCTAACCAAGTGATTCATTTCGCCAGCAGGAAGGACAGG
CTGCGGGACGGCCACCGCTAAATAGTAACAAGGAAAACAATCTAACCACA
GTTCGGCATTGAAGGGTGTTGAAGGGCATTCGAGGGGAGTGTGTGCCAGC
GTATGGTACGCTTGCGGGCTGCACGGCGATCGGCGCGACCGCAGCCATCA
ACATTAGATCTCCGATCGTCCAGCAGCTCGGCACTGAGGCGCATGCTTCG
AAGGCCTCCGCACCCCAGTTAATAACGAGAGCGAAACAATTCTAGCTAAA
CCAACCGCCGTTTGTCGTGTCTTGTGTGGGGGGTTTCCAGGAGGCAGAGA
CGTTCGGGTTCTCCCGGGTAGTAGTCCCCTTCACCCCGAGGAGGCGTTCC
TCAGCAGGGGCAGCAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11428:2746..5262-

>mRNA_A-nodosum_M_contig11428.2.2 ID=mRNA_A-nodosum_M_contig11428.2.2|Name=mRNA_A-nodosum_M_contig11428.2.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig11428:2746..5262- (Ascophyllum nodosum dioecious)
ATTTATTTCCTACTTTCCCAGGTGTACTTGAACATCGTCGGGGGTCTCAA
GGTGCAGGAAACGGCGTCGGATCTCGCTGTGGCACTTGCGATCGTCAGCA
GCTACGCCACCGTGCCCGTGCGATCGACCGAACGGAAGGACACGTGCTTT
GTCGGAGAAATCGGCCTGGGTGGCGAGCTACGGCCCGTACAACAGCTCGA
CCGGCGGATACAGGTACGGTGCGCAGCAAGACGGCAACACTCTCTAACCA
AGTGA
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