mRNA_A-nodosum_M_contig1142.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1142.2.1
Unique NamemRNA_A-nodosum_M_contig1142.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.2.1 vs. uniprot
Match: A0A6H5KIC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC7_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.900e-19
Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:    4 GGVISWFSKVQKATAAASSESEYLALAQVVNELRFLRQVKGFLTLQTD-DNIVIREDNERAIKMATNRLSSRRTRHVDMKPHIVRNAVESGGVVQIHYVKSGKQHADVLTKALDVKTFE 357
            GG ISWFS+ QK    + +E+EY++LA V+ E+ FLRQV  F+  +     I + EDN+ AI++A N +S+  ++H+D++PH +R  V    +  IH V+S  QHAD LTKAL V  FE
Sbjct:  439 GGCISWFSRTQKCVTLSMTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVLEDNQGAIQLAQNPISNGNSKHIDVRPHFIRELVGRKEISIIH-VESAYQHADFLTKALHVGDFE 556
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.2.1 vs. uniprot
Match: A0A6H5J8M4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.840e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:   10 VISWFSKVQKATAAASSESEYLALAQVVNELRFLRQVKGFLTLQTDDN-IVIREDNERAIKMATNRLSSRRTRHVDMKPHIVRNAVESGGVVQIHYVKSGKQHADVLTKALDVKTFE 357
            +++W S  QK  + ++SE+EYLA+   V E  F+  +  FL    +   I + EDNE AI +A N LSS R++H+D++ H +RN  E G V++I +V S KQHAD+LTKAL    FE
Sbjct:  114 LVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEG-VIEITHVPSEKQHADILTKALPRSIFE 229
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.2.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.470e-18
Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:    4 GGVISWFSKVQKATAAASSESEYLALAQVVNELRFLRQVKGFLTLQTDDN-IVIREDNERAIKMATNRLSSRRTRHVDMKPHIVRNAVESGGVVQIHYVKSGKQHADVLTKALDVKTFE 357
            G ++SWFS  QK  + ++SE+EY+A+   V E  F+  +  FL        I + EDNE AI +A N LSS R++H+D++ H +RN  E G V+++ +V S +QHAD+LTKAL    FE
Sbjct:  257 GCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEG-VIEVTHVPSKEQHADILTKALPRNLFE 374
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.2.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.140e-18
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1 
Query:   10 VISWFSKVQKATAAASSESEYLALAQVVNELRFLRQVKGFLTLQTDDN-IVIREDNERAIKMATNRLSSRRTRHVDMKPHIVRNAVESGGVVQIHYVKSGKQHADVLTKALDVKTFE 357
            ++ W S+ QK  + ++SE+EYLA+   V E  F+  +  FL        I + EDNE AI +A N LSS R++H+D++ H +RN  E G V+++ +V S +QHAD+LTKAL    FE
Sbjct:  132 LVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEG-VIEVTHVPSKEQHADILTKALPRDLFE 247
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.2.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.550e-18
Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:    4 GGVISWFSKVQKATAAASSESEYLALAQVVNELRFLRQVKGFLTLQTDDN-IVIREDNERAIKMATNRLSSRRTRHVDMKPHIVRNAVESGGVVQIHYVKSGKQHADVLTKALDVKTFE 357
            G ++SWFS  QK  + ++SE+EY+A+   V E  F+  +  FL        I + EDNE AI +A N LSS R++H+D++ H +RN  E G V+++ +V S +QHAD+LTKAL    FE
Sbjct:  424 GCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEG-VIEVTHVPSKEQHADILTKALPRNLFE 541
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.2.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.670e-18
Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:    4 GGVISWFSKVQKATAAASSESEYLALAQVVNELRFLRQVKGFLTLQTDDN-IVIREDNERAIKMATNRLSSRRTRHVDMKPHIVRNAVESGGVVQIHYVKSGKQHADVLTKALDVKTFE 357
            G ++SWFS  QK  + ++SE+EY+A+   V E  F+  +  FL        I + EDNE AI +A N LSS R++H+D++ H +RN  E G V+++ +V S +QHAD+LTKAL    FE
Sbjct: 1152 GCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEG-VIEVTHVPSKEQHADILTKALPRNLFE 1269
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.2.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 6.870e-18
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 1 
Query:    4 GGVISWFSKVQKATAAASSESEYLALAQVVNELRFLRQVKGFLTLQTDDN-IVIREDNERAIKMATNRLSSRRTRHVDMKPHIVRNAVESGGVVQIHYVKSGKQHADVLTKALDVKTFE 357
            G ++SWF+  QK  + ++SE+EY+A+   V E  F+  +  FL        I + EDNE AI +A N LSS R++H+D++ H +RN  E G V+++ +V S  QHAD+LTKAL    FE
Sbjct:  162 GCLVSWFAWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEG-VIEVTHVPSKVQHADILTKALPRNLFE 279
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.2.1 vs. uniprot
Match: A0A6H5KVG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.310e-18
Identity = 46/114 (40.35%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:    1 GGGVISWFSKVQKATAAASSESEYLALAQVVNELRFLRQVKGFLTLQTD-DNIVIREDNERAIKMATNRLSSRRTRHVDMKPHIVRNAVESGGVVQIHYVKSGKQHADVLTKAL 339
            GG  +S  SK Q+  A +++E+EY+A  + V E  F+R V  F+  +T   +I +REDN+ A+ +  N LSS R++H+D++ H +R   +SG +  + YV + +QHAD+LTKAL
Sbjct:    9 GGTAVSHTSKSQRVVALSTTEAEYIAAGEGVKEALFVRAVLSFVAPETSWASIQVREDNQGAMTLVQNPLSSARSKHIDVRFHFIRELFKSGRI-SVEYVSTDEQHADLLTKAL 121
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.2.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.180e-17
Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 1 
Query:   10 VISWFSKVQKATAAASSESEYLALAQVVNELRFLRQVKGFLTLQTDDN-IVIREDNERAIKMATNRLSSRRTRHVDMKPHIVRNAVESGGVVQIHYVKSGKQHADVLTKALDVKTFE 357
            ++ W S+ QK  + ++SESEYLA+   V E  F+  +  FL        I + EDNE AI +A N LSS R++H+D++ H +RN  E G V+++ +V S +QHAD+LTKAL    FE
Sbjct: 1065 LVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEG-VIEVTHVPSKEQHADILTKALPRDLFE 1180
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.2.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.380e-17
Identity = 47/119 (39.50%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:    1 GGGVISWFSKVQKATAAASSESEYLALAQVVNELRFLRQVKGFLTLQTDDNIV-IREDNERAIKMATNRLSSRRTRHVDMKPHIVRNAVESGGVVQIHYVKSGKQHADVLTKALDVKTF 354
            GGG ++WFS+ QK    +++E EY+A+A V+ E+ FLRQV   + L  D + + + EDN+ AI++A N +++  ++H+D++ H +R  VE   +  I +V S  QHAD LTKA+  ++F
Sbjct:  246 GGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEI-SITHVTSEFQHADFLTKAISKESF 363
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1142.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIC7_9PHAE1.900e-1944.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8M4_9PHAE7.840e-1943.59Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRE7_9PHAE3.470e-1842.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCG6_9PHAE4.140e-1841.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP36_9PHAE4.550e-1842.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE4.670e-1842.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTP8_9PHAE6.870e-1842.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVG7_9PHAE7.310e-1840.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3I1_9PHAE1.180e-1742.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJP2_9PHAE1.380e-1739.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1142contigA-nodosum_M_contig1142:18869..19225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size357
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-16
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size357
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866546.8754125-CDS-A-nodosum_M_contig1142:18868..192251680866546.8754125-CDS-A-nodosum_M_contig1142:18868..19225Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 18869..19225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1142.2.1prot_A-nodosum_M_contig1142.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1142 18869..19225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1142.2.1

>prot_A-nodosum_M_contig1142.2.1 ID=prot_A-nodosum_M_contig1142.2.1|Name=mRNA_A-nodosum_M_contig1142.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp
GGGVISWFSKVQKATAAASSESEYLALAQVVNELRFLRQVKGFLTLQTDD
NIVIREDNERAIKMATNRLSSRRTRHVDMKPHIVRNAVESGGVVQIHYVK
SGKQHADVLTKALDVKTFE
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mRNA from alignment at A-nodosum_M_contig1142:18869..19225-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1142.2.1 ID=mRNA_A-nodosum_M_contig1142.2.1|Name=mRNA_A-nodosum_M_contig1142.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:18869..19225- (Ascophyllum nodosum dioecious)
GGGGGGGGGGTGATCAGCTGGTTCTCGAAGGTGCAGAAGGCGACCGCGGC
CGCGTCATCCGAATCAGAGTATTTAGCGCTGGCACAAGTTGTAAATGAGC
TCCGTTTCCTTCGACAGGTGAAGGGCTTCTTGACGCTGCAAACCGATGAC
AACATTGTAATCAGGGAAGATAATGAAAGAGCTATCAAGATGGCGACCAA
CCGTTTAAGTAGCAGGCGTACGAGGCATGTGGACATGAAACCCCACATCG
TCCGAAATGCGGTAGAGAGTGGTGGTGTAGTTCAAATCCATTACGTCAAG
TCGGGGAAGCAGCATGCCGATGTGCTGACGAAAGCGTTGGACGTCAAGAC
CTTTGAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1142:18869..19225-

>mRNA_A-nodosum_M_contig1142.2.1 ID=mRNA_A-nodosum_M_contig1142.2.1|Name=mRNA_A-nodosum_M_contig1142.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:18869..19225- (Ascophyllum nodosum dioecious)
GGGGGGGGGGTGATCAGCTGGTTCTCGAAGGTGCAGAAGGCGACCGCGGC
CGCGTCATCCGAATCAGAGTATTTAGCGCTGGCACAAGTTGTAAATGAGC
TCCGTTTCCTTCGACAGGTGAAGGGCTTCTTGACGCTGCAAACCGATGAC
AACATTGTAATCAGGGAAGATAATGAAAGAGCTATCAAGATGGCGACCAA
CCGTTTAAGTAGCAGGCGTACGAGGCATGTGGACATGAAACCCCACATCG
TCCGAAATGCGGTAGAGAGTGGTGGTGTAGTTCAAATCCATTACGTCAAG
TCGGGGAAGCAGCATGCCGATGTGCTGACGAAAGCGTTGGACGTCAAGAC
CTTTGAA
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