mRNA_A-nodosum_M_contig1142.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: D8LRJ2_ECTSI (Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ2_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 9.380e-19 Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query: 22 AEDEEGYYAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVG--VCDKPC 258
A D Y HLGC++D + DRVLG KLV +++ ELCY+YC A +MATQ+G EC C++E DL+++RH +CD C
Sbjct: 70 ATDSNRDYTHLGCFVDNRSDRVLGYKLVDEEVDTELCYDYCLEQNAPFMATQWGIECWCATEPDLEYERHGEAEELCDYKC 150
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: D8LNN0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN0_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 1.520e-17 Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 43 YAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRH-DVG-VCDKPC 258
Y HLGC++DKK DRVLG KL +++ E CY+YC A MATQ+G EC C++E DLD++RH + G +CD C
Sbjct: 42 YTHLGCFVDKKSDRVLGNKLADEEVDTEFCYDYCEEQNAPLMATQWGIECWCANEVDLDYERHGEAGELCDYKC 115
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: D7FZB0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB0_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 6.020e-17 Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 22 AEDEEGYYAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVG--VCDKPC 258
A D Y HLGC++D + DRVLG KLV +++ E CY+YC A +MATQ+G EC C++E DL+++RH +CD C
Sbjct: 40 ATDSNRDYTHLGCFVDNQSDRVLGHKLVDEEVDTEFCYDYCLEKNAPFMATQWGIECWCATEVDLEYERHGEAEELCDYKC 120
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: A0A6H5K2N3_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N3_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 7.630e-17 Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 22 AEDEEGYYAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVG--VCDKPC 258
A D + Y HLGC++DKK DRV+G K+ +++ E CY+YC A MATQ+G EC C++E DL+++RH +CD C
Sbjct: 35 AADSDRNYTHLGCFVDKKSDRVMGHKIADEEVDTEFCYDYCLGENAPLMATQWGIECWCATEVDLEYERHGEAEELCDYKC 115
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 2.590e-14 Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 31 EEGYYAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVGVCDKPC 258
EEGY +++GC+ D KDDRV +T +C EYC A +MATQFG EC CS + ++++DRH GVCD C
Sbjct: 8 EEGY-SYVGCFADSKDDRVFEYMKTSPTMTTAVCLEYCLDRRATFMATQFGIECWCSVDAEIEYDRHSDGVCDCEC 82
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 2.820e-14 Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 43 YAHLGCYMDKKDDRVLGMKLV-RDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVGV-CDKPC 258
Y ++GC+ D ++DR+L L R D++ E CYE+C GA YMATQ+ EC CS+ +DL++DRH G CD C
Sbjct: 56 YEYIGCFTDSQEDRILDDMLTSRTDMSTEKCYEHCMEMGAEYMATQWAQECFCSNNKDLEYDRHGSGAECDMSC 129
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 6.930e-14 Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 31 EEGYYAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVGVCDKPC 258
+EGY +++GC+ D K+DRV +T +C EYC A YMATQ+G EC CS + ++++DRH GVCD C
Sbjct: 430 DEGY-SYVGCFADSKEDRVFEYMKTSSTMTTAVCLEYCLDRRATYMATQYGYECWCSVDAEVEYDRHSDGVCDHAC 504
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: A0A6H5JN72_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN72_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 4.440e-13 Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 43 YAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRH----------DVGVCDKPC 258
Y H+GC+ D K+DRVL + +T +CYE+C A YMATQ+G EC CS + DLD+ RH D G+C C
Sbjct: 451 YTHVGCFSDNKEDRVLEAMITSSAMTGAMCYEHCVDRRATYMATQYGFECWCSHDSDLDYARHSDDLERVDGRDYGLCGTRC 532
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: A0A6H5JLD0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD0_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 1.280e-7 Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query: 124 ELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVGV 243
++CYE+C+ GA YMATQFG EC CS + DLD+ RH G
Sbjct: 9 QMCYEHCHSEGAAYMATQFGFECLCSHDADLDYARHSEGT 48
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: D8LED5_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED5_ECTSI) HSP 1 Score: 53.5 bits (127), Expect = 2.590e-6 Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1
Query: 127 LCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVGV 243
+CYE+C GA YMATQFG EC CS + DLD+ RH +
Sbjct: 276 MCYEHCYSEGAAYMATQFGFECWCSDDTDLDYSRHSDNI 314 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1142.1.1 >prot_A-nodosum_M_contig1142.1.1 ID=prot_A-nodosum_M_contig1142.1.1|Name=mRNA_A-nodosum_M_contig1142.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp STSGLAPAEDEEGYYAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVback to top mRNA from alignment at A-nodosum_M_contig1142:5270..6123+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1142.1.1 ID=mRNA_A-nodosum_M_contig1142.1.1|Name=mRNA_A-nodosum_M_contig1142.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=854bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:5270..6123+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1142:5270..6123+ >mRNA_A-nodosum_M_contig1142.1.1 ID=mRNA_A-nodosum_M_contig1142.1.1|Name=mRNA_A-nodosum_M_contig1142.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:5270..6123+ (Ascophyllum nodosum dioecious)back to top |