mRNA_A-nodosum_M_contig1141.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1141.6.1
Unique NamemRNA_A-nodosum_M_contig1141.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1141.6.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 140 bits (352), Expect = 1.730e-35
Identity = 71/147 (48.30%), Postives = 99/147 (67.35%), Query Frame = 1
Query:   22 EWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKHKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRCWNNK 462
            EWRKA E E+    +  V+++V RP+D+ +IG+K ++K K G DG+VEK+K RLVAQGF QVEG+ Y E ++P   + SIR+LLA AA  D E+   D + AFL  +++EEIY+++P   +    AV RL KA+YGL QA R W  K
Sbjct: 1009 EWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKK 1155          
BLAST of mRNA_A-nodosum_M_contig1141.6.1 vs. uniprot
Match: A0A4Y9ZBF0_9AGAM (Uncharacterized protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9ZBF0_9AGAM)

HSP 1 Score: 128 bits (322), Expect = 1.900e-31
Identity = 67/147 (45.58%), Postives = 92/147 (62.59%), Query Frame = 1
Query:   25 WRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKHKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEF-QKFPGAVGRLNKAIYGLVQAGRCWNNK 462
            W  A   E+  +VEN  +  V  P D+  +G++ ++K K   DG +E+HK RLV QGF Q  G  YTE ++PTP  +++R +LA AA +D EL   D   AFL  D++EEIY+  PE F +K P  V RL K++YGL QAGRCW+ K
Sbjct:  684 WYSAAVEEVQALVENGTFQLVRLPPDRTALGSRWVFKVKHKSDGSIERHKARLVVQGFSQRPGFDYTETFAPTPRWSALRAVLALAAIEDLELESIDISSAFLNGDLEEEIYVRQPEGFTEKGPEWVWRLLKSLYGLKQAGRCWHKK 830          
BLAST of mRNA_A-nodosum_M_contig1141.6.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI)

HSP 1 Score: 128 bits (321), Expect = 2.510e-31
Identity = 62/155 (40.00%), Postives = 103/155 (66.45%), Query Frame = 1
Query:    1 MESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKHKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRCWNNKF 465
            M S +  +W+ A E E+  + +N  ++ V  P DK  I +K ++K K   DG++++HK RLVA+GF Q+EGV Y+E Y+PT    +I++LL+ + ++  ++  FD + AFL  +++EE+Y+++P+E ++    V +L KA+YGL QA RCWN KF
Sbjct:  642 MNSSDSKKWKAAIEEELDALNQNDTWELVPLPPDKRSISSKWVFKVKRYPDGRIQRHKARLVARGFAQIEGVDYSETYAPTTRYDTIQVLLSLSVSRGLKISQFDVKTAFLHGELEEEVYMDLPDEVKESTNRVCKLKKALYGLKQAPRCWNRKF 796          
BLAST of mRNA_A-nodosum_M_contig1141.6.1 vs. uniprot
Match: A0A445ESM5_ARAHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A445ESM5_ARAHY)

HSP 1 Score: 122 bits (306), Expect = 2.390e-30
Identity = 63/147 (42.86%), Postives = 90/147 (61.22%), Query Frame = 1
Query:   25 WRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKHKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQ-KFPGAVGRLNKAIYGLVQAGRCWNNK 462
            WRKA + E+  + +N  +     PKDK  +G K +++ K   DG +E+HK RLVA+GF QV+GV Y + +SP      +R++LA AAAK   L+  D   AFL  D+D+E+Y++IP       PG V +L K++YGL QA R WN K
Sbjct:  111 WRKAIQDELTALDQNRTWCLTELPKDKKAVGCKWVFRVKFNPDGTIERHKVRLVAKGFTQVQGVDYDDTFSPVVKMTILRVMLALAAAKKWHLKQLDVNTAFLHGDLDKEVYMKIPPGLAVSQPGLVCKLQKSLYGLKQASRQWNIK 257          
BLAST of mRNA_A-nodosum_M_contig1141.6.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR)

HSP 1 Score: 124 bits (311), Expect = 5.470e-30
Identity = 67/149 (44.97%), Postives = 89/149 (59.73%), Query Frame = 1
Query:   25 WRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKHKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEF--QKFPGAVGRLNKAIYGLVQAGRCWNNKF 465
            W  A  +EM  M +N V+D V  P     +G+K ++KRK    G V  +K RLVA+GF Q +GV Y E +SP     SIR+LLA AA  D E+   D + AFL   + E++Y+  PE F   K+P  V +LNK+IYGL QA RCWN +F
Sbjct:  481 WLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNLRF 629          
BLAST of mRNA_A-nodosum_M_contig1141.6.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 122 bits (305), Expect = 1.120e-29
Identity = 64/147 (43.54%), Postives = 93/147 (63.27%), Query Frame = 1
Query:   22 EWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKHKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRCWNNK 462
            +W+ A   EML  V+  ++D+V  PK++ V+G+K +++ K G +GK+EK+K RLVAQGF QV+G+ YTE ++P     SIR LL+ AA  D E+   D + AFL  D+DEEIY++ P       G V +L K++Y L QA   W  K
Sbjct:    8 QWKIACAQEMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQASCEWYKK 154          
BLAST of mRNA_A-nodosum_M_contig1141.6.1 vs. uniprot
Match: A0A5N6MMD4_9ASTR (Uncharacterized protein n=6 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMD4_9ASTR)

HSP 1 Score: 123 bits (308), Expect = 1.420e-29
Identity = 66/149 (44.30%), Postives = 89/149 (59.73%), Query Frame = 1
Query:   25 WRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKHKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEF--QKFPGAVGRLNKAIYGLVQAGRCWNNKF 465
            W  A  +EM  M +N V+D V  P     +G+K ++KRK    G V  +K RLVA+GF Q +GV Y E +SP     SIR+LLA AA  D E+   D + AFL   + E++Y+  P+ F   K+P  V +LNK+IYGL QA RCWN +F
Sbjct:  814 WLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRVLLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWNLRF 962          
BLAST of mRNA_A-nodosum_M_contig1141.6.1 vs. uniprot
Match: A0A8J6LHG9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LHG9_TENMO)

HSP 1 Score: 123 bits (308), Expect = 1.460e-29
Identity = 63/149 (42.28%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   19 DEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKHKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRCWNNKF 465
            ++W++A + E+  + +N  +  V  PK++ VI  + +Y  K  +DG V+K+K RLVA+GF QV GV Y E +SP     SIRM+L  AA++   LR FD + AFL  +IDE +Y++ P+ +Q     V +LN+++YGL QA RCWN +F
Sbjct:  211 EQWKQAMDEEIQSLKQNQTWTLVEPPKNQQVIDNRWVYIIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAASEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRF 359          
BLAST of mRNA_A-nodosum_M_contig1141.6.1 vs. uniprot
Match: A0A8J6LFP5_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LFP5_TENMO)

HSP 1 Score: 122 bits (305), Expect = 2.560e-29
Identity = 62/147 (42.18%), Postives = 93/147 (63.27%), Query Frame = 1
Query:   25 WRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKHKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRCWNNKF 465
            W++A + E+  + +N  +  V  PK++  I  + +YK K  +DG V+K+K RLVA+GF QV GV Y E +SP     SIRM+L  A ++   LR FD + AFL  +IDE +Y++ P+ +Q     V +LN+++YGL QA RCWN +F
Sbjct:  148 WKQAMDEEIQSLKQNQTWTLVEPPKNQQFIDNRWVYKIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAVSEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRF 294          
BLAST of mRNA_A-nodosum_M_contig1141.6.1 vs. uniprot
Match: A0A5N6LS40_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LS40_9ASTR)

HSP 1 Score: 120 bits (302), Expect = 8.950e-29
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 1
Query:   43 TEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKHKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEF--QKFPGAVGRLNKAIYGLVQAGRCWNNKF 465
            +EM  M +N V+D V  P     +G+K ++KRK    G V  +K RLVA+GF Q +GV Y E +SP     SIR+LLA AA  D E+   D + AFL   + E++Y+  P+ F   K+P  V +LNK+IYGL QA RCWN +F
Sbjct:  767 SEMQSMCDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVYKLNKSIYGLKQASRCWNLRF 909          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1141.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK1.730e-3548.30Integrase catalytic domain-containing protein (Fra... [more]
A0A4Y9ZBF0_9AGAM1.900e-3145.58Uncharacterized protein n=1 Tax=Dentipellis fragil... [more]
A0A0J7K725_LASNI2.510e-3140.00Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A445ESM5_ARAHY2.390e-3042.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6LW24_9ASTR5.470e-3044.97Integrase catalytic domain-containing protein n=2 ... [more]
A0A2R6NNP3_9APHY1.120e-2943.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6MMD4_9ASTR1.420e-2944.30Uncharacterized protein n=6 Tax=Mikania micrantha ... [more]
A0A8J6LHG9_TENMO1.460e-2942.28Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8J6LFP5_TENMO2.560e-2942.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6LS40_9ASTR8.950e-2944.76Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1141contigA-nodosum_M_contig1141:80458..80928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog15368.BRADI1G58725.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,Retrotran_gag_3,gag_pre-integrs,rve,zf-CCHC
Model size471
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.97e-31
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37V5Q@33090|Viridiplantae,3GFFK@35493|Streptophyta,3M7B5@4447|Liliopsida,3IKJW@38820|Poales
Descriptiontransposition, RNA-mediated
Cds size471
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866546.7137647-CDS-A-nodosum_M_contig1141:80457..809281680866546.7137647-CDS-A-nodosum_M_contig1141:80457..80928Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1141 80458..80928 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1141.6.1prot_A-nodosum_M_contig1141.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1141 80458..80928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1141.6.1

>prot_A-nodosum_M_contig1141.6.1 ID=prot_A-nodosum_M_contig1141.6.1|Name=mRNA_A-nodosum_M_contig1141.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=157bp
MESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQ
DGKVEKHKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGE
LRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRC
WNNKFCD
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mRNA from alignment at A-nodosum_M_contig1141:80458..80928-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1141.6.1 ID=mRNA_A-nodosum_M_contig1141.6.1|Name=mRNA_A-nodosum_M_contig1141.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=471bp|location=Sequence derived from alignment at A-nodosum_M_contig1141:80458..80928- (Ascophyllum nodosum dioecious)
ATGGAATCGCATGAATGGGACGAATGGCGGAAGGCAGAAGAGACTGAGAT GCTTGGAATGGTAGAGAACTGCGTTTATGATCAGGTGGCTCGGCCGAAGG ATAAGCTCGTGATCGGCACGAAAATGTTGTACAAGCGAAAAATCGGGCAG GACGGCAAGGTCGAGAAGCACAAGTGTCGACTTGTCGCTCAAGGGTTCTG GCAGGTGGAAGGTGTGCACTACACGGAAAAGTACTCGCCCACGCCATCAG CCGCGTCAATCCGGATGCTTTTGGCGACGGCAGCAGCCAAGGATGGGGAG CTGCGCCATTTCGACGCAGAGCAGGCGTTTTTGAAGGCGGATATTGACGA GGAGATATACATAGAGATCCCCGAAGAGTTCCAGAAGTTTCCGGGGGCAG TGGGACGGCTTAATAAGGCCATTTACGGACTCGTGCAGGCGGGGAGGTGC TGGAATAATAAGTTCTGTGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1141:80458..80928-

>mRNA_A-nodosum_M_contig1141.6.1 ID=mRNA_A-nodosum_M_contig1141.6.1|Name=mRNA_A-nodosum_M_contig1141.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=471bp|location=Sequence derived from alignment at A-nodosum_M_contig1141:80458..80928- (Ascophyllum nodosum dioecious)
ATGGAATCGCATGAATGGGACGAATGGCGGAAGGCAGAAGAGACTGAGAT
GCTTGGAATGGTAGAGAACTGCGTTTATGATCAGGTGGCTCGGCCGAAGG
ATAAGCTCGTGATCGGCACGAAAATGTTGTACAAGCGAAAAATCGGGCAG
GACGGCAAGGTCGAGAAGCACAAGTGTCGACTTGTCGCTCAAGGGTTCTG
GCAGGTGGAAGGTGTGCACTACACGGAAAAGTACTCGCCCACGCCATCAG
CCGCGTCAATCCGGATGCTTTTGGCGACGGCAGCAGCCAAGGATGGGGAG
CTGCGCCATTTCGACGCAGAGCAGGCGTTTTTGAAGGCGGATATTGACGA
GGAGATATACATAGAGATCCCCGAAGAGTTCCAGAAGTTTCCGGGGGCAG
TGGGACGGCTTAATAAGGCCATTTACGGACTCGTGCAGGCGGGGAGGTGC
TGGAATAATAAGTTCTGTGAT
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