mRNA_A-nodosum_M_contig1140.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1140.13.1
Unique NamemRNA_A-nodosum_M_contig1140.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1140.13.1 vs. uniprot
Match: A0A6H5L144_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L144_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.380e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:   61 RRLLWAGALLRMGDHRLPKRVMSGELENA-GKRGPGKEKEWTDCVADDLRLFGVT-----GDWKTAALDPGAWYNTVQEGGCRFM 297
            RRL +AG ++RMGD+RLPKR++ G +    G RG G+E +W   + +DL  FG+      G WK +A D  AWY+ +++G   FM
Sbjct:  794 RRLCFAGFVMRMGDNRLPKRMLLGAMAGGTGYRG-GQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFM 877
[Close]
BLAST of mRNA_A-nodosum_M_contig1140.13.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.010e-9
Identity = 35/71 (49.30%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:   10 CPFTEPNARAPKQPYASRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPG-KEKEWTDCVADDLRLFGV 219
            C   EP  R        RRLL+AGAL R  D RLPKR+M GEL    KR  G +E+ W  CV DDL+ FG 
Sbjct:  188 CESVEPTIR-------QRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA 251
[Close]
BLAST of mRNA_A-nodosum_M_contig1140.13.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 6.430e-9
Identity = 42/100 (42.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:   61 RRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGK---EKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGA--WYNTVQEGGCRFMA 300
            RRLL+AGA+ R  D RLPKR+M GEL   G  GPG+   E+ W  C+ DD+++F    G T D           W  AA   G   W+  V +G  RFMA
Sbjct:  647 RRLLFAGAVARQPDGRLPKRLMFGEL--VGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMA 744
[Close]
BLAST of mRNA_A-nodosum_M_contig1140.13.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.150e-8
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   61 RRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPG-KEKEWTDCVADDLRLFGVTGDWKTAALDP 252
            RRLL+AGAL R  D RLPKR+M GEL    KR  G +E+ W  CV DDL+ FG   D  +   DP
Sbjct:  328 RRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA--DHGSTKTDP 390
[Close]
BLAST of mRNA_A-nodosum_M_contig1140.13.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.180e-8
Identity = 43/100 (43.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:   61 RRLLWAGALLRMGDHRLPKRVMSGEL---ENAGKRGPGKEKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGA--WYNTVQEGGCRFMA 300
            RRLL+AGA+ R  D RLPKR+M GEL   EN G+  P  E+ W  C+ DDL++F    G T D           W  AA   G   W+  V +G  RFMA
Sbjct:  479 RRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSP--EQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMA 576
[Close]
BLAST of mRNA_A-nodosum_M_contig1140.13.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.590e-8
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   61 RRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPG-KEKEWTDCVADDLRLFGVTGDWKTAALDP 252
            RRLL+AGAL R  D RLPKR+M GEL    KR  G +E+ W  CV DDL+ FG   D  +   DP
Sbjct:  222 RRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA--DHGSTNTDP 284
[Close]
BLAST of mRNA_A-nodosum_M_contig1140.13.1 vs. uniprot
Match: A0A6H5L5Z0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.150e-8
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   61 RRLLWAGALLRMGDHRLPKRVMSGELENAGK-RGPGKEKEWTDCVADDLRLFGVTGDWKTAALDP 252
            RRLL+AGAL R  D RLPKR+M GEL    K R  G+E+ W  CV DDL+ FG   D  +   DP
Sbjct:  338 RRLLFAGALARKPDGRLPKRLMLGELARGEKGRMGGQEQNWPKCVLDDLKAFGA--DHGSTKTDP 400
[Close]
BLAST of mRNA_A-nodosum_M_contig1140.13.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.180e-8
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   61 RRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPG-KEKEWTDCVADDLRLFGV 219
            RRLL+AGAL R  D RLPKR+M GEL    KR  G +E+ W  CV DDL+ FG 
Sbjct:  461 RRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA 514
[Close]
BLAST of mRNA_A-nodosum_M_contig1140.13.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.220e-8
Identity = 34/65 (52.31%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:   61 RRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPG-KEKEWTDCVADDLRLFGVTGDWKTAALDP 252
            RRLL+AGAL R  D RLPKR+M GEL    KR  G +E+ W  CV DDL  FG   D  +   DP
Sbjct:  550 RRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGA--DHGSTKTDP 612
[Close]
BLAST of mRNA_A-nodosum_M_contig1140.13.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.230e-8
Identity = 40/98 (40.82%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:   61 RRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGK-EKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGA--WYNTVQEGGCRFMA 300
            RRLL+AGA+ R  D RLPKR+M GEL      G G  E+ W  C+ DD+++F    G T D           W  AA   G   W+  V +G  RFMA
Sbjct:  591 RRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGADRFMA 688
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1140.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L144_9PHAE2.380e-1142.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAH7_9PHAE5.010e-949.30Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEX7_9PHAE6.430e-942.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JFE2_9PHAE1.150e-852.31Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE1.180e-843.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1X4_9PHAE1.590e-852.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5Z0_9PHAE2.150e-852.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLT1_9PHAE2.180e-857.41Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KS82_9PHAE2.220e-852.31Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KQ91_9PHAE2.230e-840.82Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1140contigA-nodosum_M_contig1140:118492..118791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6500.XP_005092354.1
PFAMsRVT_1
Model size300
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.21e-08
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria
DescriptionRibonuclease H protein
Cds size300
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866546.522472-CDS-A-nodosum_M_contig1140:118491..1187911680866546.522472-CDS-A-nodosum_M_contig1140:118491..118791Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1140 118492..118791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1140.13.1prot_A-nodosum_M_contig1140.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1140 118492..118791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1140.13.1

>prot_A-nodosum_M_contig1140.13.1 ID=prot_A-nodosum_M_contig1140.13.1|Name=mRNA_A-nodosum_M_contig1140.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=100bp
VQRCPFTEPNARAPKQPYASRRLLWAGALLRMGDHRLPKRVMSGELENAG
KRGPGKEKEWTDCVADDLRLFGVTGDWKTAALDPGAWYNTVQEGGCRFMA
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mRNA from alignment at A-nodosum_M_contig1140:118492..118791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1140.13.1 ID=mRNA_A-nodosum_M_contig1140.13.1|Name=mRNA_A-nodosum_M_contig1140.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at A-nodosum_M_contig1140:118492..118791+ (Ascophyllum nodosum dioecious)
GTACAAAGATGCCCCTTCACCGAACCCAATGCGAGAGCACCGAAACAACC
GTACGCATCGAGGAGGTTGTTGTGGGCGGGGGCGCTACTCCGCATGGGTG
ACCACAGGCTACCCAAGAGGGTCATGTCGGGAGAACTCGAGAACGCGGGG
AAACGTGGACCGGGGAAGGAGAAAGAGTGGACGGACTGCGTGGCAGATGA
TCTTCGGCTATTTGGCGTCACGGGGGACTGGAAAACCGCCGCACTCGACC
CTGGGGCATGGTACAACACCGTACAAGAAGGGGGTTGTAGGTTTATGGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1140:118492..118791+

>mRNA_A-nodosum_M_contig1140.13.1 ID=mRNA_A-nodosum_M_contig1140.13.1|Name=mRNA_A-nodosum_M_contig1140.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at A-nodosum_M_contig1140:118492..118791+ (Ascophyllum nodosum dioecious)
GTACAAAGATGCCCCTTCACCGAACCCAATGCGAGAGCACCGAAACAACC
GTACGCATCGAGGAGGTTGTTGTGGGCGGGGGCGCTACTCCGCATGGGTG
ACCACAGGCTACCCAAGAGGGTCATGTCGGGAGAACTCGAGAACGCGGGG
AAACGTGGACCGGGGAAGGAGAAAGAGTGGACGGACTGCGTGGCAGATGA
TCTTCGGCTATTTGGCGTCACGGGGGACTGGAAAACCGCCGCACTCGACC
CTGGGGCATGGTACAACACCGTACAAGAAGGGGGTTGTAGGTTTATGGCC
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