mRNA_A-nodosum_M_contig114.8.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig114.8.1 vs. uniprot
Match: D8LHQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ4_ECTSI) HSP 1 Score: 197 bits (502), Expect = 6.640e-59 Identity = 100/124 (80.65%), Postives = 107/124 (86.29%), Query Frame = 2
Query: 50 TARGLATSAAVVALAVLGGVPEPAMAVAPFWVEPTKLILDPILLFFELAFVARIILSWYPALDLNKVPQNLVAWPTEPILKPTRAIVPPAFGVDVSPIVWVMICSFLHEILLGQQGILNLISNK 421
T GLAT AAVVALA LGG P A A AP WV PTKL+LDP LL+FE AFVARI+LSWYP LDLN PQNLVAWPTEPILKPTRAI+PPAFGVD+SPIVWVMICS +HEILLGQQGILNL+SNK
Sbjct: 106 TVSGLATGAAVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILKPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 229
BLAST of mRNA_A-nodosum_M_contig114.8.1 vs. uniprot
Match: A0A6H5L5E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E9_9PHAE) HSP 1 Score: 195 bits (496), Expect = 4.130e-58 Identity = 98/121 (80.99%), Postives = 105/121 (86.78%), Query Frame = 2
Query: 59 GLATSAAVVALAVLGGVPEPAMAVAPFWVEPTKLILDPILLFFELAFVARIILSWYPALDLNKVPQNLVAWPTEPILKPTRAIVPPAFGVDVSPIVWVMICSFLHEILLGQQGILNLISNK 421
GLAT A VVALA LGG P A A AP WV PTKL+LDP LLFFE AFVARI+LSWYP LDLN PQNLVAWPTEPIL+PTRAI+PPAFGVD+SPIVWVMICS +HEILLGQQGILNL+SNK
Sbjct: 101 GLATGATVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLFFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 221
BLAST of mRNA_A-nodosum_M_contig114.8.1 vs. uniprot
Match: A0A836CA21_9STRA (YGGT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA21_9STRA) HSP 1 Score: 155 bits (392), Expect = 6.190e-43 Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 2
Query: 116 PAMAVAPFWVEPTKLILDPILLFFELAFVARIILSWYPALDLNKVPQNLVAWPTEPILKPTRAIVPPAFGVDVSPIVWVMICSFLHEILLGQQGILNLISNK 421
PA A P WV PT+ LDP LL+ E AF+ RI+LSWYP DLNK PQNLVAWPTEPILKPTRA+VPPAFGVD+SPIVWVMI SF+ EIL GQQGI N++S +
Sbjct: 88 PAFADVPGWVGPTRAALDPFLLYMEFAFLCRIVLSWYPQTDLNKAPQNLVAWPTEPILKPTRAVVPPAFGVDISPIVWVMILSFVREILFGQQGIFNMLSQQ 189
BLAST of mRNA_A-nodosum_M_contig114.8.1 vs. uniprot
Match: A0A7S2V560_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V560_9STRA) HSP 1 Score: 141 bits (356), Expect = 9.450e-38 Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 2
Query: 107 VPEPAMAVAPFWVEPTKLILDPILLFFELAFVARIILSWYPALDLNKVPQNLVAWPTEPILKPTRAIVPPAFGVDVSPIVWVMICSFLHEILLGQQGILNLISNK 421
+PE A A AP WV PTKLILDP+L LA +AR++LSWYP++ L+K P + + PTEP+L+ TR +VPPAFGVDVSPIVW+MI SF HEILLGQQG+L ++ NK
Sbjct: 72 IPESAFAAAPVWVAPTKLILDPLLNIVSLAMLARVVLSWYPSISLDKAPFSYLKAPTEPVLQVTREVVPPAFGVDVSPIVWIMISSFFHEILLGQQGLLTILQNK 176
BLAST of mRNA_A-nodosum_M_contig114.8.1 vs. uniprot
Match: A0A7S3UWL9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL9_HETAK) HSP 1 Score: 136 bits (342), Expect = 1.310e-35 Identity = 63/102 (61.76%), Postives = 79/102 (77.45%), Query Frame = 2
Query: 110 PEPAMAVAPFWVEPTKLILDPILLFFELAFVARIILSWYPALDLNKVPQNLVAWPTEPILKPTRAIVPPAFGVDVSPIVWVMICSFLHEILLGQQGILNLIS 415
P A A P WVEPT +L P L F LA +ARI+LSWYP++DLN+ P NLVAWPTEP+L TR +VPPAFGVD+SPIVW+M+ SF++E+ LG QGIL L++
Sbjct: 73 PTVASAEVPAWVEPTSTVLGPFLAVFSLAMLARIVLSWYPSIDLNEAPFNLVAWPTEPLLAFTRGVVPPAFGVDISPIVWLMVASFVNEVALGPQGILTLLA 174
BLAST of mRNA_A-nodosum_M_contig114.8.1 vs. uniprot
Match: A0A7S2GHS6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHS6_9STRA) HSP 1 Score: 126 bits (316), Expect = 6.770e-32 Identity = 59/118 (50.00%), Postives = 84/118 (71.19%), Query Frame = 2
Query: 59 GLATSAAVVALAVLGGVPEPAMAVAPFWVEPTKLILDPILLFFELAFVARIILSWYPALDLNKVPQNLVAWPTEPILKPTRAIVPPAFGVDVSPIVWVMICSFLHEILLGQQGILNLI 412
GL T AA+ ++ +L P+ A+A W PT+ I DP+LL + + R+I+SWYP ++LNK+P N++ WPTEP L+PTR ++PPAFGVD+SPIVW+ I SF EI GQQG+ N++
Sbjct: 55 GLTTVAALSSVVLLH--PDLAIAYDNAWAGPTRAICDPLLLVGQTVMLFRVIISWYPEINLNKLPYNIITWPTEPFLRPTRKVIPPAFGVDISPIVWIAILSFFREIFFGQQGVFNML 170
BLAST of mRNA_A-nodosum_M_contig114.8.1 vs. uniprot
Match: L1J932_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J932_GUITC) HSP 1 Score: 122 bits (306), Expect = 4.450e-31 Identity = 63/114 (55.26%), Postives = 77/114 (67.54%), Query Frame = 2
Query: 80 VVALAVLGGVPEPAMAVAPFWVEPTKLILDPILLFFELAFVARIILSWYPALDLNKVPQNLVAWPTEPILKPTRAIVPPAFGVDVSPIVWVMICSFLHEILLGQQGILNLISNK 421
VV ++L P A A AP W+EPT+ LD L F L F RI L+WYP +DLN+ PQN+VAWPTEP K R VPP FGVD+SPIV + SF+ EI LGQQG+L +I+NK
Sbjct: 5 VVIASILTAFPLAASAAAPEWLEPTRSSLDIGLALFSLLFFLRIPLTWYPQMDLNQFPQNIVAWPTEPFCKLVRLAVPPLFGVDISPIVLYGVLSFIREIFLGQQGVLTMIANK 118
BLAST of mRNA_A-nodosum_M_contig114.8.1 vs. uniprot
Match: W7TNB9_9STRA (Integral membrane protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNB9_9STRA) HSP 1 Score: 123 bits (308), Expect = 1.030e-30 Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 2
Query: 131 APFWVEPTKLILDPILLFFELAFVARIILSWYPALDLNKVPQNLVAWPTEPILKPTRAIVPPAFGVDVSPIVWVMICSFLHEILLGQQGILNLISNK 421
A WV P K +++P+L +AF+ RI+LSWYP +DLNK+P NL+AWPTEP L TR +VPPAFGVD+SPI+W +FL EIL+ QGIL L+ K
Sbjct: 74 ASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170
BLAST of mRNA_A-nodosum_M_contig114.8.1 vs. uniprot
Match: A0A7S2PCB6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCB6_9STRA) HSP 1 Score: 123 bits (308), Expect = 1.150e-30 Identity = 53/90 (58.89%), Postives = 70/90 (77.78%), Query Frame = 2
Query: 140 WVEPTKLILDPILLFFELAFVARIILSWYPALDLNKVPQNLVAWPTEPILKPTRAIVPPAFGVDVSPIVWVMICSFLHEILLGQQGILNL 409
WVEP K +LDP L A + R+++SWYP ++N+VP N+V WPTEP+L+ TR +VPPAFGVD+SPIVW+ + +FLHEI LGQQG+L L
Sbjct: 79 WVEPLKNVLDPSLNLLSFAMLCRVVISWYPETNVNEVPYNIVVWPTEPLLRVTRGVVPPAFGVDISPIVWLGVFTFLHEIFLGQQGLLTL 168
BLAST of mRNA_A-nodosum_M_contig114.8.1 vs. uniprot
Match: A0A7S1FZ37_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZ37_9STRA) HSP 1 Score: 121 bits (303), Expect = 5.450e-30 Identity = 53/90 (58.89%), Postives = 71/90 (78.89%), Query Frame = 2
Query: 140 WVEPTKLILDPILLFFELAFVARIILSWYPALDLNKVPQNLVAWPTEPILKPTRAIVPPAFGVDVSPIVWVMICSFLHEILLGQQGILNL 409
WV P + +LDP+L A + RI++SWYP +L+ +P +L WPTEP+L+PTRA+VPPAFGVD+SP+VW+ I +FLHEILLGQQG+L L
Sbjct: 74 WVVPLQSVLDPLLNLLSFAMLCRIVISWYPNTNLSTLPYSLAVWPTEPLLRPTRAVVPPAFGVDISPMVWLGIFTFLHEILLGQQGLLTL 163 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig114.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig114.8.1 >prot_A-nodosum_M_contig114.8.1 ID=prot_A-nodosum_M_contig114.8.1|Name=mRNA_A-nodosum_M_contig114.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=101bp MAVAPFWVEPTKLILDPILLFFELAFVARIILSWYPALDLNKVPQNLVAWback to top mRNA from alignment at A-nodosum_M_contig114:146358..152550- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig114.8.1 ID=mRNA_A-nodosum_M_contig114.8.1|Name=mRNA_A-nodosum_M_contig114.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6193bp|location=Sequence derived from alignment at A-nodosum_M_contig114:146358..152550- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig114:146358..152550- >mRNA_A-nodosum_M_contig114.8.1 ID=mRNA_A-nodosum_M_contig114.8.1|Name=mRNA_A-nodosum_M_contig114.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=303bp|location=Sequence derived from alignment at A-nodosum_M_contig114:146358..152550- (Ascophyllum nodosum dioecious)back to top |