mRNA_A-nodosum_M_contig114.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig114.10.1
Unique NamemRNA_A-nodosum_M_contig114.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig114.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig114contigA-nodosum_M_contig114:166885..167915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size872
Hectar predicted targeting categoryother localisation
Exons2
Cds size489
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866544.1293616-UTR-A-nodosum_M_contig114:166884..1669571680866544.1293616-UTR-A-nodosum_M_contig114:166884..166957Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig114 166885..166957 +
1680866544.1574323-UTR-A-nodosum_M_contig114:167605..1679151680866544.1574323-UTR-A-nodosum_M_contig114:167605..167915Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig114 167606..167915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866544.1397095-CDS-A-nodosum_M_contig114:166957..1674111680866544.1397095-CDS-A-nodosum_M_contig114:166957..167411Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig114 166958..167411 +
1680866544.148293-CDS-A-nodosum_M_contig114:167570..1676051680866544.148293-CDS-A-nodosum_M_contig114:167570..167605Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig114 167571..167605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig114.10.1prot_A-nodosum_M_contig114.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig114 166958..167605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig114.10.1

>prot_A-nodosum_M_contig114.10.1 ID=prot_A-nodosum_M_contig114.10.1|Name=mRNA_A-nodosum_M_contig114.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=163bp
MIMKTHYDLPPPTTSPRTVHPDDVMRGHRDGKNSPQERPRASEEKEEVAV
NGTPSTDEGGDFISHIEVETDQEPTQLADRHSELAILRQQGTTAKSTDWG
GDCPIQADFVENTNNAVTATRVAAHEEAAIGKHRQGTASTDENKQYDPGG
TTFELAMDHLGP*
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mRNA from alignment at A-nodosum_M_contig114:166885..167915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig114.10.1 ID=mRNA_A-nodosum_M_contig114.10.1|Name=mRNA_A-nodosum_M_contig114.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1031bp|location=Sequence derived from alignment at A-nodosum_M_contig114:166885..167915+ (Ascophyllum nodosum dioecious)
TCCGAATTACATTGATGATTTGCACAGCAGATTGATCAAGGTACAGTAGA
GAGTCTTGCCGCCGACTCTTAAAATGATTATGAAGACTCATTATGATCTT
CCACCGCCTACAACCTCACCAAGAACAGTGCATCCCGATGATGTGATGAG
GGGACATCGGGACGGGAAAAACAGCCCACAGGAGCGACCACGAGCCTCGG
AGGAAAAGGAAGAGGTGGCTGTAAACGGCACCCCGAGCACGGATGAGGGG
GGAGATTTTATTTCCCATATCGAGGTCGAGACGGACCAGGAACCAACACA
ACTCGCCGATCGTCATTCCGAACTGGCGATACTTCGGCAACAAGGGACAA
CAGCAAAAAGCACAGATTGGGGGGGAGACTGCCCCATTCAAGCAGACTTC
GTGGAGAACACGAATAATGCAGTTACAGCAACACGAGTCGCCGCCCACGA
GGAGGCTGCGATTGGCAAACATCGGCAAGGGACGGCATCTACTGACGAGA
ACAAGCAGTACGATCCCGGAGGGACGAGTGATGATCCGTTAATTTCTGCC
TAGTGGCCATGCTGTATACTGTATGCTTTGTTGTGCGTATTTTTGTTTTG
TTTTGCCTTCCTCGCAATTTCCCATGTTATCATGTCAGGTTCCTCTAAAG
ATGAAAGAGATCGAGACATGCAAACCAGAGGAGCAGCTTTTGAGCTGGCA
ATGGATCATCTCGGTCCATGATCAAAAGGGTACTGTTGCATCGAGATTTT
CTTTGTACGTGGACAAAAGGAGAGTAACTTTTTCGCGTGGTGCTGACGCC
CGCCAATTAGTAGTTAGCTCCAAATGTTTTGAATTGGTTTCTGACAAGCA
AACTGTTTGATCACGGCATCAGAATGGTATCTTGTCTACGAGATAATCAA
GTTGGAAAATCCACGTGCATACGCAACAAATTGTCATTCTGAAGTAGATT
TTTTTCGTGACGTGATGTGACGAACCGTTCCAAGGAGATAGGTGATCGAT
TGGTTGCCGTGACGTGACGGACGATTTGAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig114:166885..167915+

>mRNA_A-nodosum_M_contig114.10.1 ID=mRNA_A-nodosum_M_contig114.10.1|Name=mRNA_A-nodosum_M_contig114.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=489bp|location=Sequence derived from alignment at A-nodosum_M_contig114:166885..167915+ (Ascophyllum nodosum dioecious)
ATGATTATGAAGACTCATTATGATCTTCCACCGCCTACAACCTCACCAAG
AACAGTGCATCCCGATGATGTGATGAGGGGACATCGGGACGGGAAAAACA
GCCCACAGGAGCGACCACGAGCCTCGGAGGAAAAGGAAGAGGTGGCTGTA
AACGGCACCCCGAGCACGGATGAGGGGGGAGATTTTATTTCCCATATCGA
GGTCGAGACGGACCAGGAACCAACACAACTCGCCGATCGTCATTCCGAAC
TGGCGATACTTCGGCAACAAGGGACAACAGCAAAAAGCACAGATTGGGGG
GGAGACTGCCCCATTCAAGCAGACTTCGTGGAGAACACGAATAATGCAGT
TACAGCAACACGAGTCGCCGCCCACGAGGAGGCTGCGATTGGCAAACATC
GGCAAGGGACGGCATCTACTGACGAGAACAAGCAGTACGATCCCGGAGGG
ACGACTTTTGAGCTGGCAATGGATCATCTCGGTCCATGA
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