mRNA_A-nodosum_M_contig1139.44.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1139.44.1
Unique NamemRNA_A-nodosum_M_contig1139.44.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1139.44.1 vs. uniprot
Match: D7G5Y3_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y3_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 5.220e-12
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2
Query:   17 TGGHYATLGLKSCATTAEVKRAYRELARQLHPDKTGGDAALAEQMKALNTAYEV 178
            T GHY TLG+KS ATTAEVK+AYR+LA Q HPDK  G+ A A   K +  AYEV
Sbjct:  354 TSGHYTTLGIKSTATTAEVKKAYRKLALQHHPDKNQGNEASANIFKDVTAAYEV 407          
BLAST of mRNA_A-nodosum_M_contig1139.44.1 vs. uniprot
Match: F0Y0R6_AURAN (J domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0R6_AURAN)

HSP 1 Score: 59.7 bits (143), Expect = 1.680e-10
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 2
Query:   26 HYATLGLKSCATTAEVKRAYRELARQLHPDKTGGDAALAEQMKALNTAYEV 178
            HY TLG+K  A  AE+K+AYR LA+Q HPDK  G+A  AE+   + +AYEV
Sbjct:    2 HYRTLGVKPRAKEAEIKKAYRSLAKQWHPDKNPGNAQAAEKFSEIASAYEV 52          
BLAST of mRNA_A-nodosum_M_contig1139.44.1 vs. uniprot
Match: A0A086Y4C5_9RHOB (Molecular chaperone DnaJ n=1 Tax=Paenirhodobacter enshiensis TaxID=1105367 RepID=A0A086Y4C5_9RHOB)

HSP 1 Score: 63.9 bits (154), Expect = 1.840e-10
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:   29 YATLGLKSCATTAEVKRAYRELARQLHPDKTGGDAALAEQMKALNTAYEV 178
            Y  LG+   AT A++K+AYR+LAR+LHPD TGGDA  +E+ KA+N AY++
Sbjct:   10 YQVLGVSKTATDADIKKAYRKLARELHPDLTGGDAKKSERFKAVNEAYDL 59          
BLAST of mRNA_A-nodosum_M_contig1139.44.1 vs. uniprot
Match: A0A519T739_9BACT (J domain-containing protein (Fragment) n=1 Tax=Hymenobacter sp. TaxID=1898978 RepID=A0A519T739_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 6.500e-10
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 2
Query:   14 ITGGHYATLGLKSCATTAEVKRAYRELARQLHPDKTGGDAALAEQMKALNTAYEV 178
            ++  HY  LG+   A TA++KRAYR LA +LHPDK GGD    E+ KA+  AY V
Sbjct:    1 MSQNHYQVLGVPPTAPTADIKRAYRRLATELHPDKHGGDRHYEERFKAIAVAYGV 55          
BLAST of mRNA_A-nodosum_M_contig1139.44.1 vs. uniprot
Match: A0A443K323_9RHOB (J domain-containing protein n=3 Tax=Sinirhodobacter populi TaxID=2306993 RepID=A0A443K323_9RHOB)

HSP 1 Score: 62.4 bits (150), Expect = 6.700e-10
Identity = 27/50 (54.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:   29 YATLGLKSCATTAEVKRAYRELARQLHPDKTGGDAALAEQMKALNTAYEV 178
            Y  LG+   A+ AE+K+AYR+LA++LHPD TGGDAA A++ KA++ AY++
Sbjct:    9 YEVLGVAKTASDAEIKKAYRKLAKELHPDLTGGDAAKADRFKAVSAAYDL 58          
BLAST of mRNA_A-nodosum_M_contig1139.44.1 vs. uniprot
Match: A0A382DDQ9_9ZZZZ (J domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382DDQ9_9ZZZZ)

HSP 1 Score: 58.2 bits (139), Expect = 6.840e-10
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 2
Query:   29 YATLGLKSCATTAEVKRAYRELARQLHPDKTGGDAALAEQMKALNTAYE 175
            Y  LG+ + A+ AE+KRAYR+LARQ HPD+   DAA  E+ KA+  AYE
Sbjct:    6 YRVLGVSNDASDAEIKRAYRKLARQYHPDRNPDDAAAEERFKAIQAAYE 54          
BLAST of mRNA_A-nodosum_M_contig1139.44.1 vs. uniprot
Match: A0A382UFE0_9ZZZZ (J domain-containing protein (Fragment) n=2 Tax=root TaxID=1 RepID=A0A382UFE0_9ZZZZ)

HSP 1 Score: 61.6 bits (148), Expect = 8.020e-10
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 2
Query:   29 YATLGLKSCATTAEVKRAYRELARQLHPDKTGGDAALAEQMKALNTAYE 175
            Y  LG+ S AT AE+KRAYR+LARQ HPD+  GDAA  E+ KA+  +YE
Sbjct:    6 YRVLGVSSDATDAEIKRAYRKLARQHHPDRNPGDAAAEERFKAIQASYE 54          
BLAST of mRNA_A-nodosum_M_contig1139.44.1 vs. uniprot
Match: A0A7M3Y2F6_9ARCH (J domain-containing protein (Fragment) n=2 Tax=Candidatus Poseidoniales TaxID=133814 RepID=A0A7M3Y2F6_9ARCH)

HSP 1 Score: 60.5 bits (145), Expect = 8.060e-10
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 2
Query:   29 YATLGLKSCATTAEVKRAYRELARQLHPDKTGGDAALAEQMKALNTAYE 175
            Y  LG+   AT AE+KR+YR+LARQ HPD+  GDAA  EQ K++ ++YE
Sbjct:    6 YRVLGVSKDATDAEIKRSYRKLARQYHPDRNPGDAAAEEQFKSIQSSYE 54          
BLAST of mRNA_A-nodosum_M_contig1139.44.1 vs. uniprot
Match: A0A352CHP3_9BACT (Molecular chaperone DnaJ (Fragment) n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A352CHP3_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 8.410e-10
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 2
Query:   26 HYATLGLKSCATTAEVKRAYRELARQLHPDKTGGDAALAEQMKALNTAYEV 178
            HY TLGL   AT  ++K+A+R+LA  LHPDKTG D AL+ +   +  AYEV
Sbjct:    8 HYQTLGLAPGATAEQIKKAFRKLALDLHPDKTGNDPALSVRFSEIQRAYEV 58          
BLAST of mRNA_A-nodosum_M_contig1139.44.1 vs. uniprot
Match: A0A7X6SKZ1_9ACTN (J domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6SKZ1_9ACTN)

HSP 1 Score: 59.7 bits (143), Expect = 9.110e-10
Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 2
Query:   14 ITGGHYATLGLKSCATTAEVKRAYRELARQLHPDKTGGDAALAEQMKALNTAYEV 178
            +T  HY  LG+   AT  E+K+AYR LARQ HPD   GDAA   + K +  AYEV
Sbjct:    6 VTADHYEALGVSRTATAEEIKKAYRRLARQYHPDTNPGDAAAEAKFKEVAHAYEV 60          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1139.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Y3_ECTSI5.220e-1262.96Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
F0Y0R6_AURAN1.680e-1054.90J domain-containing protein (Fragment) n=1 Tax=Aur... [more]
A0A086Y4C5_9RHOB1.840e-1056.00Molecular chaperone DnaJ n=1 Tax=Paenirhodobacter ... [more]
A0A519T739_9BACT6.500e-1050.91J domain-containing protein (Fragment) n=1 Tax=Hym... [more]
A0A443K323_9RHOB6.700e-1054.00J domain-containing protein n=3 Tax=Sinirhodobacte... [more]
A0A382DDQ9_9ZZZZ6.840e-1055.10J domain-containing protein (Fragment) n=1 Tax=mar... [more]
A0A382UFE0_9ZZZZ8.020e-1059.18J domain-containing protein (Fragment) n=2 Tax=roo... [more]
A0A7M3Y2F6_9ARCH8.060e-1055.10J domain-containing protein (Fragment) n=2 Tax=Can... [more]
A0A352CHP3_9BACT8.410e-1052.94Molecular chaperone DnaJ (Fragment) n=1 Tax=Chitin... [more]
A0A7X6SKZ1_9ACTN9.110e-1050.91J domain-containing protein (Fragment) n=1 Tax=Act... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1139contigA-nodosum_M_contig1139:249114..249544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size193
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866541.726977-CDS-A-nodosum_M_contig1139:249113..2492351680866541.726977-CDS-A-nodosum_M_contig1139:249113..249235Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1139 249114..249235 -
1680866541.904036-CDS-A-nodosum_M_contig1139:249474..2495441680866541.904036-CDS-A-nodosum_M_contig1139:249474..249544Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1139 249475..249544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1139.44.1prot_A-nodosum_M_contig1139.44.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1139 249114..249544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1139.44.1

>prot_A-nodosum_M_contig1139.44.1 ID=prot_A-nodosum_M_contig1139.44.1|Name=mRNA_A-nodosum_M_contig1139.44.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
GFQEDNRWPLRHARAQVLRHHGRSQASLQGAGEAAPPRQDRGGRCSRRAN
ESIEYGLRGEPYY*
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mRNA from alignment at A-nodosum_M_contig1139:249114..249544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1139.44.1 ID=mRNA_A-nodosum_M_contig1139.44.1|Name=mRNA_A-nodosum_M_contig1139.44.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=431bp|location=Sequence derived from alignment at A-nodosum_M_contig1139:249114..249544- (Ascophyllum nodosum dioecious)
GGCTTCCAGGAGGATAACCGGTGGCCACTACGCCACGCTAGGGCTCAAGT CTTGCGCCACCACGGCAGAAGTGAGGATTGTGGCCGTGTATGTGCTGATC AATCCCGTACAAATAAATGTCGCTGCAGCTCGTTTGTTTGGTAAACGTTC TTTTTTGGACATTCAGACGGGTTCTATCATATACGCTTAAACTCGAATGT GGGCTTTTCCAGAGGCATTTCATACTTCACATGTTCCAGAAAGATGTTGA ATTTGTGCATCGTAGAAACATATTCTCATATTTTTCATTCCTTGCCTGTT GTATTGCAGGTCAAGCGAGCCTACAGGGAGCTGGCGAGGCAGCTCCACCC CGACAAGACCGGGGGGGACGCTGCTCTCGCCGAGCAAATGAAAGCATTGA ATACGGCCTACGAGGTGAGCCTTACTATTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1139:249114..249544-

>mRNA_A-nodosum_M_contig1139.44.1 ID=mRNA_A-nodosum_M_contig1139.44.1|Name=mRNA_A-nodosum_M_contig1139.44.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig1139:249114..249544- (Ascophyllum nodosum dioecious)
GGCTTCCAGGAGGATAACCGGTGGCCACTACGCCACGCTAGGGCTCAAGT
CTTGCGCCACCACGGCAGAAGTCAAGCGAGCCTACAGGGAGCTGGCGAGG
CAGCTCCACCCCGACAAGACCGGGGGGGACGCTGCTCTCGCCGAGCAAAT
GAAAGCATTGAATACGGCCTACGAGGTGAGCCTTACTATTGA
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