mRNA_A-nodosum_M_contig1137.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1137.7.1
Unique NamemRNA_A-nodosum_M_contig1137.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1137.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1137contigA-nodosum_M_contig1137:59676..60262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size231
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size123
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866541.0126653-UTR-A-nodosum_M_contig1137:59675..597111680866541.0126653-UTR-A-nodosum_M_contig1137:59675..59711Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1137 59676..59711 +
1680866541.0457196-UTR-A-nodosum_M_contig1137:60190..602621680866541.0457196-UTR-A-nodosum_M_contig1137:60190..60262Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1137 60191..60262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866541.0262854-CDS-A-nodosum_M_contig1137:59711..597871680866541.0262854-CDS-A-nodosum_M_contig1137:59711..59787Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1137 59712..59787 +
1680866541.0369644-CDS-A-nodosum_M_contig1137:60143..601901680866541.0369644-CDS-A-nodosum_M_contig1137:60143..60190Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1137 60144..60190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1137.7.1prot_A-nodosum_M_contig1137.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1137 59712..60190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1137.7.1

>prot_A-nodosum_M_contig1137.7.1 ID=prot_A-nodosum_M_contig1137.7.1|Name=mRNA_A-nodosum_M_contig1137.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=41bp
MKAKKVTLEDAERALMPYLGDLQKPFVPETQDVDEQSSDT*
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mRNA from alignment at A-nodosum_M_contig1137:59676..60262+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1137.7.1 ID=mRNA_A-nodosum_M_contig1137.7.1|Name=mRNA_A-nodosum_M_contig1137.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=587bp|location=Sequence derived from alignment at A-nodosum_M_contig1137:59676..60262+ (Ascophyllum nodosum dioecious)
ACTGACTCGGATGGCCCCTACGCCGACCTAAAGCACATGAAAGCAAAGAA
AGTCACCCTTGAAGACGCAGAACGAGCTTTGATGCCTTACCTTGGCGACC
TTCAGAAACCCTGTGAGTATTTATAAACGATCAGTGTCTTGACTGATCAC
CACATTGTCTCGTGCATTAGGCTCCGCGCTGAAAACGGCTACGATGGTAT
AGAAGTATGCTTTACATTATTGATCCCGGACACTTCGAGCCCTCTGCCGC
AAACCCGTCTCGCGAGACCAAATACTCAGGCTCCCACGGGGAAAGGGAAA
TTATCATTTTCCCTGATCAGCTAACCACGAGCAGGATGAGCAACCTTACA
CGATTGATACATACATACTTCGAATACTCGACACGCAAGTATTAGTCTCT
TGAAAATGATATCCGTCACACGTGAATATCGCCGCGACTTGCCTTTCCTG
CATCTTTTCTTTGAACAGTTGTGCCAGAAACACAAGACGTAGACGAACAG
TCCTCCGATACTTGAGTATGGAAACGGCGCTATCTCCGCACCAGCGAGCC
ATGGAGCCGAAGAACATTTTTCGGCAGCTTTCGATTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1137:59676..60262+

>mRNA_A-nodosum_M_contig1137.7.1 ID=mRNA_A-nodosum_M_contig1137.7.1|Name=mRNA_A-nodosum_M_contig1137.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=123bp|location=Sequence derived from alignment at A-nodosum_M_contig1137:59676..60262+ (Ascophyllum nodosum dioecious)
ATGAAAGCAAAGAAAGTCACCCTTGAAGACGCAGAACGAGCTTTGATGCC
TTACCTTGGCGACCTTCAGAAACCCTTTGTGCCAGAAACACAAGACGTAG
ACGAACAGTCCTCCGATACTTGA
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