mRNA_A-nodosum_M_contig1136.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1136.11.1
Unique NamemRNA_A-nodosum_M_contig1136.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1136.11.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.620e-31
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:    1 LVRDGDQQVKVGMKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPD 246
            L++DG  QV VGMKE+MHHEA+TG+T DGVF G+PH+LF+G VP   DAPPF  K +D+A L KIQQRYDSVH RL +LYPD
Sbjct:   60 LLKDGPSQVTVGMKEYMHHEAYTGLTGDGVFAGEPHDLFVGGVPDPADAPPFQLKDIDKATLDKIQQRYDSVHPRLEALYPD 141
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BLAST of mRNA_A-nodosum_M_contig1136.11.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.700e-28
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 LVRDGDQQVKVGMKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPD 246
            L++DG  QV VGMKEFMHHE + GMT DGVF G+PHE+F+G +P   DAPPF  KAV++  L KIQQRYDSV  RL +L+PD
Sbjct:    9 LLKDGPTQVTVGMKEFMHHEVYRGMTGDGVFAGKPHEVFVGGIPDAADAPPFELKAVEQDTLVKIQQRYDSVVPRLEALFPD 90
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BLAST of mRNA_A-nodosum_M_contig1136.11.1 vs. uniprot
Match: A0A6H5KUF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF7_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 8.120e-28
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:   37 MKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPD 246
            MKE+MHHEA+TG+T DGVF G+PHELF+G VP   DAP F  K +D+A L KIQQRYDSVH RL  LYPD
Sbjct:    1 MKEYMHHEAYTGLTGDGVFAGEPHELFVGGVPDPADAPLFQLKDIDKATLDKIQQRYDSVHPRLEVLYPD 70
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BLAST of mRNA_A-nodosum_M_contig1136.11.1 vs. uniprot
Match: A0A6H5KD34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD34_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.630e-21
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   37 MKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSV 216
            MKE+MHHEA+TG+T DGVF G+PHELF+G VP   DAPPF  K +D+A L KIQQRYDSV
Sbjct:    1 MKEYMHHEAYTGLTGDGVFAGEPHELFVGGVPDPADAPPFQLKDIDKATLDKIQQRYDSV 60
[Close]
BLAST of mRNA_A-nodosum_M_contig1136.11.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.100e-13
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    7 RDGDQQVKVGMKEFMHHEAFTGMTRDGVFTGQ--PHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYP 243
            + GD +VKV +K+ MH   + G+  DG       PH+LF+GS PR++DAPP+  K V E ++ K++QRY + H RL + +P
Sbjct:  336 KGGDGRVKVRVKKHMHGAEWNGIHEDGNLNPDALPHDLFIGSPPRIQDAPPYKLKRVPEDVIQKVEQRYLASHERLAAAFP 416
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1136.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KIQ0_9PHAE1.620e-3167.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY8_ECTSI2.700e-2863.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUF7_9PHAE8.120e-2868.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD34_9PHAE1.630e-2170.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE1.100e-1341.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1136contigA-nodosum_M_contig1136:55016..55262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size249
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866540.572991-CDS-A-nodosum_M_contig1136:55015..552611680866540.572991-CDS-A-nodosum_M_contig1136:55015..55261Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1136 55016..55261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1136.11.1prot_A-nodosum_M_contig1136.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1136 55016..55261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1136.11.1

>prot_A-nodosum_M_contig1136.11.1 ID=prot_A-nodosum_M_contig1136.11.1|Name=mRNA_A-nodosum_M_contig1136.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=82bp
LVRDGDQQVKVGMKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAP
PFVFKAVDEAILSKIQQRYDSVHTRLISLYPD
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mRNA from alignment at A-nodosum_M_contig1136:55016..55262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1136.11.1 ID=mRNA_A-nodosum_M_contig1136.11.1|Name=mRNA_A-nodosum_M_contig1136.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=247bp|location=Sequence derived from alignment at A-nodosum_M_contig1136:55016..55262+ (Ascophyllum nodosum dioecious)
CTGGTCAGAGACGGCGACCAGCAGGTGAAGGTGGGCATGAAGGAGTTCAT
GCATCACGAGGCGTTCACGGGCATGACACGAGATGGAGTTTTCACCGGAC
AGCCCCACGAGCTCTTCCTTGGCAGCGTCCCAAGGGTAGAAGATGCGCCC
CCGTTCGTCTTCAAGGCGGTTGACGAGGCGATCCTCTCGAAGATTCAGCA
ACGCTACGACAGCGTGCACACCAGGTTGATCTCGCTGTATCCCGATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1136:55016..55262+

>mRNA_A-nodosum_M_contig1136.11.1 ID=mRNA_A-nodosum_M_contig1136.11.1|Name=mRNA_A-nodosum_M_contig1136.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at A-nodosum_M_contig1136:55016..55262+ (Ascophyllum nodosum dioecious)
CTGGTCAGAGACGGCGACCAGCAGGTGAAGGTGGGCATGAAGGAGTTCAT
GCATCACGAGGCGTTCACGGGCATGACACGAGATGGAGTTTTCACCGGAC
AGCCCCACGAGCTCTTCCTTGGCAGCGTCCCAAGGGTAGAAGATGCGCCC
CCGTTCGTCTTCAAGGCGGTTGACGAGGCGATCCTCTCGAAGATTCAGCA
ACGCTACGACAGCGTGCACACCAGGTTGATCTCGCTGTATCCCGAT
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