mRNA_A-nodosum_M_contig11339.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11339.1.1
Unique NamemRNA_A-nodosum_M_contig11339.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11339.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11339contigA-nodosum_M_contig11339:923..1607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKX6
Preferred nameUSP48
PFAMsUCH,ubiquitin
Model size208
Max annot lvl2759|Eukaryota
KEGG koko:K02911,ko:K06255,ko:K11858
KEGG Pathwayko03010,ko04512,ko05161,ko05205,map03010,map04512,map05161,map05205
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0007275,GO:0008150,GO:0009791,GO:0010154,GO:0016020,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0045121,GO:0045202,GO:0045211,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071944,GO:0097060,GO:0098589,GO:0098590,GO:0098794,GO:0098805,GO:0098857
Exons2
Evalue2.86e-09
EggNOG OGsCOG5077@1|root,KOG1863@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size207
COG categoryO
BRITEbr01610,ko00000,ko00001,ko00002,ko00535,ko01000,ko01002,ko03011,ko03029,ko04121,ko04147,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866540.0393384-CDS-A-nodosum_M_contig11339:922..9821680866540.0393384-CDS-A-nodosum_M_contig11339:922..982Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11339 923..982 +
1680866540.0548513-CDS-A-nodosum_M_contig11339:1460..16071680866540.0548513-CDS-A-nodosum_M_contig11339:1460..1607Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11339 1461..1607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11339.1.1prot_A-nodosum_M_contig11339.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11339 923..1607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11339.1.1

>prot_A-nodosum_M_contig11339.1.1 ID=prot_A-nodosum_M_contig11339.1.1|Name=mRNA_A-nodosum_M_contig11339.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=69bp
KRPFAISRKWISDFKLHHEQFLRSTAKDATGQAKGGGCVSGRAKAPLKPP
DERVNTSITCDHGNLVSDG
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mRNA from alignment at A-nodosum_M_contig11339:923..1607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11339.1.1 ID=mRNA_A-nodosum_M_contig11339.1.1|Name=mRNA_A-nodosum_M_contig11339.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=685bp|location=Sequence derived from alignment at A-nodosum_M_contig11339:923..1607+ (Ascophyllum nodosum dioecious)
AAGCGACCGTTCGCGATCTCGCGCAAATGGATCTCGGACTTCAAGCTCCA
TCACGAGCAGGTACCGTACATTACTACACTTGTTTCCCCCAATGGAACTT
GATGCTACTTGGTGGCACACTTGACGTTGTGCGGTGCCGTAAAGcTAGAA
GTACCGTCCCTGGTACATCAATAGCTCATTACAGTTGGGCGCAGTGCAAT
GCAGTGCAGTTTATTATCGCGTCAGCGATAGTATTATGGTCTTATTAAAT
CCCAATGCAGCAGTCTCGGAGGGTTGCGTCTCCTTTGTTAAATGCCAGCT
ATTTACGATCATAACGTTGATGTTTCACGCTGAAGGCCTACTAGACTACT
CCCTAAGCATGTTTTGATGAAATACGACCCATGAGGGAAAGTTAACGAAA
GAAAACGTGCTATGTACTGCATGATTACTCAGTATCTTAGCTCTCGTCTC
CGTTGACATTTTTCTCTCCGGACGGGGTGTTTGTCGTGGGGGTGGCGGCG
TTTGCCAACGCTCCGTGATACGACTGGACCAACCACAGTTCTTGCGCTCC
ACGGCGAAGGATGCTACTGGACAAGCCAAGGGTGGCGGATGTGTTTCGGG
CAGGGCGAAGGCCCCTCTGAAGCCGCCAGATGAGCGCGTTAACACCAGCA
TCACGTGCGATCATGGCAACCTCGTCAGCGACGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11339:923..1607+

>mRNA_A-nodosum_M_contig11339.1.1 ID=mRNA_A-nodosum_M_contig11339.1.1|Name=mRNA_A-nodosum_M_contig11339.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=207bp|location=Sequence derived from alignment at A-nodosum_M_contig11339:923..1607+ (Ascophyllum nodosum dioecious)
AAGCGACCGTTCGCGATCTCGCGCAAATGGATCTCGGACTTCAAGCTCCA
TCACGAGCAGTTCTTGCGCTCCACGGCGAAGGATGCTACTGGACAAGCCA
AGGGTGGCGGATGTGTTTCGGGCAGGGCGAAGGCCCCTCTGAAGCCGCCA
GATGAGCGCGTTAACACCAGCATCACGTGCGATCATGGCAACCTCGTCAG
CGACGGG
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