mRNA_A-nodosum_M_contig1133.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1133.3.1
Unique NamemRNA_A-nodosum_M_contig1133.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1133.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1133contigA-nodosum_M_contig1133:46287..47773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1487
Hectar predicted targeting categoryother localisation
Exons1
Cds size732
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866538.1188555-UTR-A-nodosum_M_contig1133:46286..469611680866538.1188555-UTR-A-nodosum_M_contig1133:46286..46961Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1133 46287..46961 -
1680866538.137728-UTR-A-nodosum_M_contig1133:47693..477731680866538.137728-UTR-A-nodosum_M_contig1133:47693..47773Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1133 47694..47773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866538.1285641-CDS-A-nodosum_M_contig1133:46961..476931680866538.1285641-CDS-A-nodosum_M_contig1133:46961..47693Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1133 46962..47693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1133.3.1prot_A-nodosum_M_contig1133.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1133 46962..47693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1133.3.1

>prot_A-nodosum_M_contig1133.3.1 ID=prot_A-nodosum_M_contig1133.3.1|Name=mRNA_A-nodosum_M_contig1133.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=244bp
MLTDLSTRLEKIEGMLIRLLVENKISSRPSGIGGAAAGAAGGDDTWKWTQ
KRSESNREMEGEGSRAEESDDGVSNVVRDTAQELQEVRGRLQLLEEEESR
RASASSADVAIPADPAGPRPASALLAQSEGKNAANAERNPGDGGGSISLQ
GVVPASELPEDDEIGKPQGRGKTALPEVLPTTTSMQSTDQGTEVAEISTE
THASETKYGRAQEELKDEDSDGGWSERRRSGKLSTISESPAKS*
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mRNA from alignment at A-nodosum_M_contig1133:46287..47773-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1133.3.1 ID=mRNA_A-nodosum_M_contig1133.3.1|Name=mRNA_A-nodosum_M_contig1133.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1487bp|location=Sequence derived from alignment at A-nodosum_M_contig1133:46287..47773- (Ascophyllum nodosum dioecious)
GGCTAGGGGGTCGCGGTGTTTCGGCACCGCCGTCCACTTCAGAGATAGAC
AACTCGAGCTCGGTCTCCAACACGAGCACGATGCTGACCGACCTCTCCAC
CCGTCTGGAGAAGATCGAGGGCATGTTGATCCGGCTGCTCGTCGAGAACA
AGATTTCATCGCGTCCTAGCGGCATCGGCGGCGCAGCAGCAGGAGCAGCT
GGAGGAGACGATACTTGGAAGTGGACCCAAAAGAGGAGCGAGAGTAACCG
TGAGATGGAGGGGGAAGGCAGCCGCGCTGAAGAGTCAGATGACGGCGTTT
CAAACGTCGTTCGGGACACCGCTCAGGAGCTTCAAGAGGTTAGGGGGCGA
CTGCAACTGTTGGAGGAAGAGGAATCGAGGAGGGCATCTGCCTCTTCAGC
TGATGTTGCGATTCCTGCTGACCCCGCCGGACCGCGGCCCGCCTCTGCTC
TGCTCGCTCAGTCGGAGGGAAAGAACGCCGCGAACGCTGAACGAAACCCC
GGTGATGGTGGCGGCAGCATTTCTCTGCAGGGAGTGGTGCCAGCTTCCGA
GTTGCCAGAAGACGACGAGATTGGCAAGCCGCAGGGGAGAGGGAAGACCG
CTTTGCCAGAGGTGTTGCCCACCACTACCAGCATGCAATCGACGGATCAA
GGCACAGAGGTGGCCGAGATTAGCACAGAGACACATGCGAGCGAAACCAA
GTATGGGAGGGCACAGGAGGAGCTCAAGGATGAGGACTCCGATGGCGGTT
GGAGTGAAAGGAGGCGTTCGGGTAAGCTCAGCACCATATCCGAGTCTCCG
GCTAAGTCGTGAGGGGGTGATGGTGCCATCGCGCTGTTGTAAAAACGGTG
GCGACATCAAGAGTGATGAGAGGGAAATGATGGAAGAGAGAGAGCTGGGG
GACTTGGGTCTGATAGTGCTGGGGTTGGGGTTGCTCGTGGATGATGTGTC
AGGACAGTCGTATGATTCCGTGTTGTTTTGAGCCACAAGATTGACGAAAA
TATGTCATCCGCTTCTTTTAACCTTTCCCACGGTTAGCTCTAGAGCTTTT
CTACCAACGACTCAGGTCTTTCGTGTGTGTGTGTGTGTGTGTGTGTGCAT
TTTTTACGAGACTTCGTTGTTCCTCCTGCACAGGTGTTGTAGTAGTACAT
GGGTATGGATATGGATATTATGTCTGTGTCGAACAGGCGCGATGGGTTTA
ACGTTAAAGTCCGTTGCGCCGTAATGAAGACACCTCCCTTGGGAGAGCCC
CCACGGATATTCAACGTTTTGCGTCGTGTTCGATTCTTGCAACAGGAAAT
CGTTAAGAGAAAAGTGTGTGGTGCTTTTTAGTGTTTGTGTCTTTTCTCTA
TGTCCTAATGTTTTTGTGTTATCGTAGTGCCTCTCATCATCTTTCCCTGT
TTCCGTTTGCTTTTCGGTGTGCTTAGGGTGTCGCAATTAAGATTTTTCGA
GCTAGGCCCACCAACGCAAAGAAATATTTAACTTTTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1133:46287..47773-

>mRNA_A-nodosum_M_contig1133.3.1 ID=mRNA_A-nodosum_M_contig1133.3.1|Name=mRNA_A-nodosum_M_contig1133.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at A-nodosum_M_contig1133:46287..47773- (Ascophyllum nodosum dioecious)
ATGCTGACCGACCTCTCCACCCGTCTGGAGAAGATCGAGGGCATGTTGAT
CCGGCTGCTCGTCGAGAACAAGATTTCATCGCGTCCTAGCGGCATCGGCG
GCGCAGCAGCAGGAGCAGCTGGAGGAGACGATACTTGGAAGTGGACCCAA
AAGAGGAGCGAGAGTAACCGTGAGATGGAGGGGGAAGGCAGCCGCGCTGA
AGAGTCAGATGACGGCGTTTCAAACGTCGTTCGGGACACCGCTCAGGAGC
TTCAAGAGGTTAGGGGGCGACTGCAACTGTTGGAGGAAGAGGAATCGAGG
AGGGCATCTGCCTCTTCAGCTGATGTTGCGATTCCTGCTGACCCCGCCGG
ACCGCGGCCCGCCTCTGCTCTGCTCGCTCAGTCGGAGGGAAAGAACGCCG
CGAACGCTGAACGAAACCCCGGTGATGGTGGCGGCAGCATTTCTCTGCAG
GGAGTGGTGCCAGCTTCCGAGTTGCCAGAAGACGACGAGATTGGCAAGCC
GCAGGGGAGAGGGAAGACCGCTTTGCCAGAGGTGTTGCCCACCACTACCA
GCATGCAATCGACGGATCAAGGCACAGAGGTGGCCGAGATTAGCACAGAG
ACACATGCGAGCGAAACCAAGTATGGGAGGGCACAGGAGGAGCTCAAGGA
TGAGGACTCCGATGGCGGTTGGAGTGAAAGGAGGCGTTCGGGTAAGCTCA
GCACCATATCCGAGTCTCCGGCTAAGTCGTGA
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