mRNA_A-nodosum_M_contig1132.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1132.5.1
Unique NamemRNA_A-nodosum_M_contig1132.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1132.5.1 vs. uniprot
Match: A0A343C636_FUCDI (Cytochrome-c oxidase n=3 Tax=Fucus TaxID=3011 RepID=A0A343C636_FUCDI)

HSP 1 Score: 126 bits (316), Expect = 8.030e-32
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAVIQDDYLSWVGKRLCS 168
            ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAV QDDYLSWVGKRLCS
Sbjct:  996 ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAVNQDDYLSWVGKRLCS 1051
[Close]
BLAST of mRNA_A-nodosum_M_contig1132.5.1 vs. uniprot
Match: Q2TUE5_9PHAE (Cytochrome-c oxidase n=1 Tax=Desmarestia viridis TaxID=62313 RepID=Q2TUE5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.050e-31
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAVIQDDYLSWVGKRLCS 168
            ACPGRLNQVFLF+KREGVFYGQCSELCGVNHGFMPIVVQAV QDDYL+WVGKRLCS
Sbjct: 1241 ACPGRLNQVFLFIKREGVFYGQCSELCGVNHGFMPIVVQAVSQDDYLTWVGKRLCS 1296
[Close]
BLAST of mRNA_A-nodosum_M_contig1132.5.1 vs. uniprot
Match: A0A0U1WNN9_SARFS (Cytochrome-c oxidase n=2 Tax=Sargassum fusiforme TaxID=590727 RepID=A0A0U1WNN9_SARFS)

HSP 1 Score: 124 bits (312), Expect = 2.780e-31
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAVIQDDYLSWVGKRLCS 168
            ACPGRLNQVFLFVKREGVFYGQCSE+CGVNHGFMPIVVQAV QDDYL+WVGKRLCS
Sbjct:  992 ACPGRLNQVFLFVKREGVFYGQCSEICGVNHGFMPIVVQAVSQDDYLTWVGKRLCS 1047
[Close]
BLAST of mRNA_A-nodosum_M_contig1132.5.1 vs. uniprot
Match: Q94YZ5_PYLLI (Cytochrome-c oxidase n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94YZ5_PYLLI)

HSP 1 Score: 124 bits (312), Expect = 2.800e-31
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAVIQDDYLSWVGKRLCS 168
            ACPGRLNQVF+FVKREGVFYGQCSELCGVNHGFMPIVVQAV QDDYL+WVGKRLCS
Sbjct: 1227 ACPGRLNQVFIFVKREGVFYGQCSELCGVNHGFMPIVVQAVSQDDYLTWVGKRLCS 1282
[Close]
BLAST of mRNA_A-nodosum_M_contig1132.5.1 vs. uniprot
Match: D1H013_ECTSI (Cytochrome oxidase 2 (Fragment) n=9 Tax=Ectocarpus TaxID=2879 RepID=D1H013_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 3.610e-31
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAVIQDDYLSWVGKRLCS 168
            ACPGRLNQVF+FVKREGVFYGQCSELCGVNHGFMPIVVQAV QD+YL+WVGKRLCS
Sbjct:  447 ACPGRLNQVFMFVKREGVFYGQCSELCGVNHGFMPIVVQAVSQDEYLTWVGKRLCS 502
[Close]
BLAST of mRNA_A-nodosum_M_contig1132.5.1 vs. uniprot
Match: D1H001_9PHAE (Cytochrome oxidase 2 (Fragment) n=3 Tax=Ectocarpus fasciculatus TaxID=43935 RepID=D1H001_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 3.670e-31
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAVIQDDYLSWVGKRLCS 168
            ACPGRLNQVF+FVKREGVFYGQCSELCGVNHGFMPIVVQAV QD+YL+WVGKRLCS
Sbjct:  449 ACPGRLNQVFMFVKREGVFYGQCSELCGVNHGFMPIVVQAVSQDEYLTWVGKRLCS 504
[Close]
BLAST of mRNA_A-nodosum_M_contig1132.5.1 vs. uniprot
Match: UPI002008EEC4 (cytochrome c oxidase subunit 2 n=1 Tax=Myagropsis myagroides TaxID=74101 RepID=UPI002008EEC4)

HSP 1 Score: 124 bits (311), Expect = 3.800e-31
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAVIQDDYLSWVGKRLCS 168
            ACPGRLNQVFLFVKREGVFYGQCSE+CGVNHGFMPIVVQAV QDDYL+WVGKRLCS
Sbjct:  983 ACPGRLNQVFLFVKREGVFYGQCSEICGVNHGFMPIVVQAVNQDDYLTWVGKRLCS 1038
[Close]
BLAST of mRNA_A-nodosum_M_contig1132.5.1 vs. uniprot
Match: A0A0G2RLB6_TUROR (Cytochrome-c oxidase n=1 Tax=Turbinaria ornata TaxID=86657 RepID=A0A0G2RLB6_TUROR)

HSP 1 Score: 124 bits (311), Expect = 3.800e-31
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAVIQDDYLSWVGKRLCS 168
            ACPGRLNQVFLFVKREGVFYGQCSE+CGVNHGFMPIVVQAV QDDYL+WVGKRLCS
Sbjct:  988 ACPGRLNQVFLFVKREGVFYGQCSEICGVNHGFMPIVVQAVNQDDYLTWVGKRLCS 1043
[Close]
BLAST of mRNA_A-nodosum_M_contig1132.5.1 vs. uniprot
Match: A0A1S5QK26_9PHAE (Cytochrome-c oxidase n=8 Tax=Sargassum TaxID=3015 RepID=A0A1S5QK26_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 3.800e-31
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAVIQDDYLSWVGKRLCS 168
            ACPGRLNQVFLFVKREGVFYGQCSE+CGVNHGFMPIVVQAV QDDYL+WVGKRLCS
Sbjct:  989 ACPGRLNQVFLFVKREGVFYGQCSEICGVNHGFMPIVVQAVNQDDYLTWVGKRLCS 1044
[Close]
BLAST of mRNA_A-nodosum_M_contig1132.5.1 vs. uniprot
Match: A0A0U1V163_9PHAE (Cytochrome-c oxidase n=3 Tax=Sargassum TaxID=3015 RepID=A0A0U1V163_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 3.800e-31
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAVIQDDYLSWVGKRLCS 168
            ACPGRLNQVFLFVKREGVFYGQCSE+CGVNHGFMPIVVQAV QDDYL+WVGKRLCS
Sbjct:  991 ACPGRLNQVFLFVKREGVFYGQCSEICGVNHGFMPIVVQAVNQDDYLTWVGKRLCS 1046
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1132.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A343C636_FUCDI8.030e-3298.21Cytochrome-c oxidase n=3 Tax=Fucus TaxID=3011 RepI... [more]
Q2TUE5_9PHAE2.050e-3194.64Cytochrome-c oxidase n=1 Tax=Desmarestia viridis T... [more]
A0A0U1WNN9_SARFS2.780e-3194.64Cytochrome-c oxidase n=2 Tax=Sargassum fusiforme T... [more]
Q94YZ5_PYLLI2.800e-3194.64Cytochrome-c oxidase n=1 Tax=Pylaiella littoralis ... [more]
D1H013_ECTSI3.610e-3192.86Cytochrome oxidase 2 (Fragment) n=9 Tax=Ectocarpus... [more]
D1H001_9PHAE3.670e-3192.86Cytochrome oxidase 2 (Fragment) n=3 Tax=Ectocarpus... [more]
UPI002008EEC43.800e-3194.64cytochrome c oxidase subunit 2 n=1 Tax=Myagropsis ... [more]
A0A0G2RLB6_TUROR3.800e-3194.64Cytochrome-c oxidase n=1 Tax=Turbinaria ornata Tax... [more]
A0A1S5QK26_9PHAE3.800e-3194.64Cytochrome-c oxidase n=8 Tax=Sargassum TaxID=3015 ... [more]
A0A0U1V163_9PHAE3.800e-3194.64Cytochrome-c oxidase n=3 Tax=Sargassum TaxID=3015 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1132contigA-nodosum_M_contig1132:216715..216980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog45157.CMW010CT
Preferred nameCOX2
PFAMsCOX2,COX2_TM
Model size266
Max annot lvl2759|Eukaryota
KEGG koko:K02256,ko:K02261
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004129,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005751,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006140,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006979,GO:0007275,GO:0007589,GO:0007595,GO:0008150,GO:0008152,GO:0008324,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010310,GO:0010562,GO:0010726,GO:0010728,GO:0010729,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0015002,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0015980,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0016675,GO:0016676,GO:0017144,GO:0019219,GO:0019220,GO:0019222,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022857,GO:0022890,GO:0022900,GO:0022904,GO:0030808,GO:0030810,GO:0030879,GO:0031090,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045277,GO:0045333,GO:0045935,GO:0045937,GO:0045981,GO:0046034,GO:0046483,GO:0046903,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0050878,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051194,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0080090,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901360,GO:1901564,GO:1902600,GO:1903426,GO:1903428,GO:1903578,GO:1903580,GO:2000377,GO:2000379,GO:2001169,GO:2001171
Exons1
Evalue2.61e-23
EggNOG OGsCOG1622@1|root,KOG4767@2759|Eukaryota
EC1.9.3.1
Descriptionoxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
Cds size171
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866537.9417183-UTR-A-nodosum_M_contig1132:216714..2168091680866537.9417183-UTR-A-nodosum_M_contig1132:216714..216809Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1132 216715..216809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866537.9572406-CDS-A-nodosum_M_contig1132:216809..2169801680866537.9572406-CDS-A-nodosum_M_contig1132:216809..216980Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1132 216810..216980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1132.5.1prot_A-nodosum_M_contig1132.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1132 216810..216980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1132.5.1

>prot_A-nodosum_M_contig1132.5.1 ID=prot_A-nodosum_M_contig1132.5.1|Name=mRNA_A-nodosum_M_contig1132.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
ACPGRLNQVFLFVKREGVFYGQCSELCGVNHGFMPIVVQAVIQDDYLSWV
GKRLCS*
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mRNA from alignment at A-nodosum_M_contig1132:216715..216980-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1132.5.1 ID=mRNA_A-nodosum_M_contig1132.5.1|Name=mRNA_A-nodosum_M_contig1132.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=266bp|location=Sequence derived from alignment at A-nodosum_M_contig1132:216715..216980- (Ascophyllum nodosum dioecious)
GCATGTCCTGGCCGACTAAATCAAGTTTTCCTTTTTGTAAAAAGAGAAGG
GGTATTTTATGGTCAATGTAGTGAGTTATGTGGTGTTAATCATGGTTTTA
TGCCTATCGTAGTACAAGCTGTTATTCAAGATGATTACTTAAGCTGGGTT
GGAAAAAGATTATGCTCTTAAATTCTTTATTTTTCATTTTAATTTTCGGG
GTTTTGGGTTTAATTGTTATACCTTCGAGTTATAAACTAATTCTAAGACA
ATATTCTTTATTTGTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1132:216715..216980-

>mRNA_A-nodosum_M_contig1132.5.1 ID=mRNA_A-nodosum_M_contig1132.5.1|Name=mRNA_A-nodosum_M_contig1132.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1132:216715..216980- (Ascophyllum nodosum dioecious)
GCATGTCCTGGCCGACTAAATCAAGTTTTCCTTTTTGTAAAAAGAGAAGG
GGTATTTTATGGTCAATGTAGTGAGTTATGTGGTGTTAATCATGGTTTTA
TGCCTATCGTAGTACAAGCTGTTATTCAAGATGATTACTTAAGCTGGGTT
GGAAAAAGATTATGCTCTTAA
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