mRNA_A-nodosum_M_contig1132.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1132.3.1
Unique NamemRNA_A-nodosum_M_contig1132.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1132.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1132contigA-nodosum_M_contig1132:23334..24068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size190
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866537.8948352-CDS-A-nodosum_M_contig1132:23333..234431680866537.8948352-CDS-A-nodosum_M_contig1132:23333..23443Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1132 23334..23443 +
1680866537.9053574-CDS-A-nodosum_M_contig1132:23989..240681680866537.9053574-CDS-A-nodosum_M_contig1132:23989..24068Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1132 23990..24068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1132.3.1prot_A-nodosum_M_contig1132.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1132 23334..24068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1132.3.1

>prot_A-nodosum_M_contig1132.3.1 ID=prot_A-nodosum_M_contig1132.3.1|Name=mRNA_A-nodosum_M_contig1132.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
MPDCWPVVERQILEAFSRKKRKCAERTTSCGRGFASQEQGASGGALDGDE
DGASHSRLNLRGI
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mRNA from alignment at A-nodosum_M_contig1132:23334..24068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1132.3.1 ID=mRNA_A-nodosum_M_contig1132.3.1|Name=mRNA_A-nodosum_M_contig1132.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=735bp|location=Sequence derived from alignment at A-nodosum_M_contig1132:23334..24068+ (Ascophyllum nodosum dioecious)
ATGCCAGACTGCTGGCCGGTAGTGGAACGTCAGATTCTCGAAGCATTCAG
TCGGAAGAAGAGGAAATGCGCCGAAAGGACTACATCGTGCGGGAGAGGAT
TCGCTTCCCAGTGAGTTGTGAGATTCAAACCGATGGCCTCTACCAGTAGT
TTGTTTTTGGTGCCAGGATGAACACCTATGGGTAGACTGGCCATCCCATT
TCGTATCATACATTCTCTGATATCCCACCGCCGCTGCCCCTCAAAATTTA
GATTGCAACCGTTCTCTGTTGCTGGTTCGCTACAGAAACAGCTGATAGCG
TACTAAGTACTACACACCCGCCCTCTCGCCGTTGTGCAGGGTGTGGGAAA
TATCGTATAGGTTCATGCTATGCGCTGGGCGGCCGGCAAGCTTGCTCCTG
GATAAAAATCCTCTCGATATCGTGCAGGAGGGCGCTACCCGCGCGTTCAT
GCCGTACCATCGCACTATGGACGAAGGTGGGTGCGCGACTTTTCGATTCT
CCTGAGCGATTAGGGTTGAGAAAATCATCTGACGCACACATTCTTCTGCC
GTTCAGCTTTAGAGTCCACATTCCTTTTGTTTTGTATCTTCGCTTTCTAA
CCCATTACTAAGGCGTCGTTCGCGGTTGTTATTCTCCCAACGCCGTGACT
CAACAGAGAACAAGGGGCCTCAGGCGGCGCATTAGACGGTGATGAGGATG
GTGCGAGTCATTCTCGATTGAACCTTCGCGGTATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1132:23334..24068+

>mRNA_A-nodosum_M_contig1132.3.1 ID=mRNA_A-nodosum_M_contig1132.3.1|Name=mRNA_A-nodosum_M_contig1132.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig1132:23334..24068+ (Ascophyllum nodosum dioecious)
ATGCCAGACTGCTGGCCGGTAGTGGAACGTCAGATTCTCGAAGCATTCAG
TCGGAAGAAGAGGAAATGCGCCGAAAGGACTACATCGTGCGGGAGAGGAT
TCGCTTCCCAAGAACAAGGGGCCTCAGGCGGCGCATTAGACGGTGATGAG
GATGGTGCGAGTCATTCTCGATTGAACCTTCGCGGTATC
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