mRNA_A-nodosum_M_contig1131.4.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1131.4.1 vs. uniprot
Match: D8LF70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF70_ECTSI) HSP 1 Score: 212 bits (540), Expect = 1.950e-69 Identity = 113/115 (98.26%), Postives = 115/115 (100.00%), Query Frame = 1
Query: 1 MVKDKKASEFATRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSDVRIDAKLNKFLFSKGVRNVPTRVRVRLSRKRNEDEEATEKLYTLVQHVEVADIKGLQTENYDQA 345
MVKDKKASEFATRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSDVR+DAKLNKFLFSKGVRNVPTRVRVRLSRKRNEDEEATEKLYTLVQHVEVA+IKGLQTENYDQA
Sbjct: 1 MVKDKKASEFATRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSDVRVDAKLNKFLFSKGVRNVPTRVRVRLSRKRNEDEEATEKLYTLVQHVEVANIKGLQTENYDQA 115
BLAST of mRNA_A-nodosum_M_contig1131.4.1 vs. uniprot
Match: F0YCW2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCW2_AURAN) HSP 1 Score: 170 bits (430), Expect = 1.150e-52 Identity = 86/110 (78.18%), Postives = 102/110 (92.73%), Query Frame = 1
Query: 1 MVKDKKASEFATRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSDVRIDAKLNKFLFSKGVRNVPTRVRVRLSRKRNEDEEATEKLYTLVQHVEVADIKGLQTE 330
MVK +++++ TRDYT++L KRL+G+TFKK+APRAVRE+KKFAQ MMKTSDVR+DAKLNKFL+SKG+RNVPTRVRVRLSRKRNEDEEA+EKLYTLVQHVEV +KGL TE
Sbjct: 1 MVKGQRSADLVTRDYTVNLHKRLHGITFKKKAPRAVREIKKFAQSMMKTSDVRVDAKLNKFLWSKGIRNVPTRVRVRLSRKRNEDEEASEKLYTLVQHVEVTSVKGLNTE 110
BLAST of mRNA_A-nodosum_M_contig1131.4.1 vs. uniprot
Match: A0A6U1KMU7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1KMU7_9STRA) HSP 1 Score: 160 bits (405), Expect = 7.660e-49 Identity = 83/105 (79.05%), Postives = 97/105 (92.38%), Query Frame = 1
Query: 16 KASEFATRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSDVRIDAKLNKFLFSKGVRNVPTRVRVRLSRKRNEDEEATEKLYTLVQHVEVADIKGLQTE 330
KA + TRDYTI+L KRL+G+TFK++APRA+RE+KKFA++ MKTSDVRIDAKLNK ++SKGVRNVP RVRVRLSRKRNEDEEA+EKLYTLVQHVEVA +KGLQTE
Sbjct: 7 KAPDLVTRDYTINLHKRLHGITFKRKAPRAIREIKKFAEKAMKTSDVRIDAKLNKHVWSKGVRNVPYRVRVRLSRKRNEDEEASEKLYTLVQHVEVASVKGLQTE 111
BLAST of mRNA_A-nodosum_M_contig1131.4.1 vs. uniprot
Match: A0A835YWF7_9STRA (Ribosomal protein L31e-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWF7_9STRA) HSP 1 Score: 158 bits (399), Expect = 6.090e-48 Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 1
Query: 1 MVKDKKASEFATRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSDVRIDAKLNKFLFSKGVRNVPTRVRVRLSRKRNEDEEATEKLYTLVQHVEVADIKGLQTENYDQA 345
M KDKK +EF TR+ TIHL KR++GVTFKKRAPRAV+EVKKFA + M T+DVR+DA LNKFLFSKGVR VP RVRVR+SRKRNEDE+A EKLYTLVQ+V AD KGLQ E + A
Sbjct: 1 MAKDKKVAEFVTREMTIHLHKRVFGVTFKKRAPRAVKEVKKFAAKAMGTTDVRVDASLNKFLFSKGVRTVPHRVRVRMSRKRNEDEDAEEKLYTLVQYVPCADFKGLQNETVESA 115
BLAST of mRNA_A-nodosum_M_contig1131.4.1 vs. uniprot
Match: A0A7S2UWG1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWG1_9STRA) HSP 1 Score: 158 bits (399), Expect = 6.490e-48 Identity = 86/116 (74.14%), Postives = 98/116 (84.48%), Query Frame = 1
Query: 1 MVKDKKASEFA---TRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSDVRIDAKLNKFLFSKGVRNVPTRVRVRLSRKRNEDEEATEKLYTLVQHVEVADIKGLQTENYD 339
M KD+K+S A +RDYTI+L KR+Y +TFKKRAPR +RE+K+FA + M TSDVRIDAKLNKF++SKGVRNVP RVRVRLSRKRNEDEEA EKLYTLVQHVEV KGLQTEN D
Sbjct: 1 MAKDRKSSRSADVVSRDYTINLHKRMYKITFKKRAPRCIREIKQFASKAMGTSDVRIDAKLNKFIWSKGVRNVPYRVRVRLSRKRNEDEEAKEKLYTLVQHVEVTSFKGLQTENVD 116
BLAST of mRNA_A-nodosum_M_contig1131.4.1 vs. uniprot
Match: A0A7S1N0R3_9EUKA (Hypothetical protein n=2 Tax=Prymnesiophyceae TaxID=2608131 RepID=A0A7S1N0R3_9EUKA) HSP 1 Score: 153 bits (387), Expect = 4.360e-46 Identity = 77/109 (70.64%), Postives = 94/109 (86.24%), Query Frame = 1
Query: 13 KKASEFATRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSDVRIDAKLNKFLFSKGVRNVPTRVRVRLSRKRNEDEEATEKLYTLVQHVEVADIKGLQTENYD 339
K ++ TRDYTIH+SKRLYGVTFKKRAPRAVRE+K+FA + MKTSDVR+D LNKF++S+GV+NVPTR+RVRLSR+RNEDE+A E+LYTL+ HVEV D KGLQ E +
Sbjct: 8 KPKADIVTRDYTIHMSKRLYGVTFKKRAPRAVREIKQFAVKTMKTSDVRVDTSLNKFVWSQGVKNVPTRIRVRLSRRRNEDEDAKEQLYTLISHVEVKDFKGLQNETVE 116
BLAST of mRNA_A-nodosum_M_contig1131.4.1 vs. uniprot
Match: A0A6V1PKA7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PKA7_HETAK) HSP 1 Score: 151 bits (382), Expect = 2.440e-45 Identity = 78/115 (67.83%), Postives = 99/115 (86.09%), Query Frame = 1
Query: 1 MVKDKK--ASEFATRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSDVRIDAKLNKFLFSKGVRNVPTRVRVRLSRKRNEDEEATEKLYTLVQHVEVADIKGLQTENYD 339
M K++K +++ +RDYTI+L KRLY TF+K+AP+A+R++K FA +MM TSDVR+DAKLNKF++SKG++NVP RVRVRLSRKRNEDE+A E LYTLVQH+EVAD KGLQTEN D
Sbjct: 1 MAKERKTRSADVVSRDYTINLHKRLYKTTFRKKAPKAIRQIKAFATKMMGTSDVRVDAKLNKFIWSKGIKNVPYRVRVRLSRKRNEDEDAKESLYTLVQHIEVADFKGLQTENVD 115
BLAST of mRNA_A-nodosum_M_contig1131.4.1 vs. uniprot
Match: F0WL95_9STRA (60S ribosomal protein L31 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WL95_9STRA) HSP 1 Score: 150 bits (380), Expect = 5.570e-45 Identity = 73/110 (66.36%), Postives = 99/110 (90.00%), Query Frame = 1
Query: 13 KKASEFATRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSDVRIDAKLNKFLFSKGVRNVPTRVRVRLSRKRNEDEEATEKLYTLVQHVEVADIKGLQTENYDQ 342
K++ + RDYTI+L KRL+GVTFKK+APRA+RE+KKFAQ+ MKT+DVR+D++LNKFL+S+G+++VP RVR+RLSRKRN+DE++ EKLYTLV+HV+VA +KGLQTE D+
Sbjct: 11 KRSPDVVARDYTINLHKRLHGVTFKKKAPRAIREIKKFAQKAMKTTDVRVDSRLNKFLWSQGIKSVPRRVRIRLSRKRNDDEDSKEKLYTLVEHVQVATVKGLQTETVDE 120
BLAST of mRNA_A-nodosum_M_contig1131.4.1 vs. uniprot
Match: A0A812U6U9_SYMMI (RPL31 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U6U9_SYMMI) HSP 1 Score: 150 bits (379), Expect = 7.910e-45 Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 1
Query: 16 KASEFATRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSDVRIDAKLNKFLFSKGVRNVPTRVRVRLSRKRNEDEEATEKLYTLVQHVEVADIKGLQTEN 333
K S+ ATRDYTIH+SKRLYGV FKKRAPRA+ E+KKFAQ+ M T +VR+D LNK L+S+GVRNVP RVRVRL R+R+EDEEA EKLYTLV++V+VAD KGLQTEN
Sbjct: 12 KGSDIATRDYTIHMSKRLYGVNFKKRAPRAIAEIKKFAQKAMGTKNVRVDTMLNKHLWSQGVRNVPKRVRVRLERRRDEDEEAKEKLYTLVKYVQVADFKGLQTEN 117
BLAST of mRNA_A-nodosum_M_contig1131.4.1 vs. uniprot
Match: A0A7S3PMV4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMV4_9STRA) HSP 1 Score: 149 bits (376), Expect = 2.000e-44 Identity = 80/116 (68.97%), Postives = 99/116 (85.34%), Query Frame = 1
Query: 1 MVKDKKAS--EFATRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSDVRIDAKLNKFLFSKGVRNVPTRVRVRLSRKRNEDEEATEKLYTLVQHVEVADIKGLQTENYDQ 342
MVK +KA+ + ++DYTI+L KR++ +TFK++APRAVRE+KKFA++ M T DVRID+KLNKF++SKGVRNVP RVRVRLSRKRNEDE+A EKLYTLVQHVEV KGLQTE D+
Sbjct: 1 MVKGEKAARPDVVSQDYTINLHKRIHRITFKRKAPRAVREIKKFAEKAMGTKDVRIDSKLNKFVWSKGVRNVPHRVRVRLSRKRNEDEDAKEKLYTLVQHVEVTSFKGLQTEKVDE 116 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1131.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1131.4.1 >prot_A-nodosum_M_contig1131.4.1 ID=prot_A-nodosum_M_contig1131.4.1|Name=mRNA_A-nodosum_M_contig1131.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp MVKDKKASEFATRDYTIHLSKRLYGVTFKKRAPRAVREVKKFAQQMMKTSback to top mRNA from alignment at A-nodosum_M_contig1131:43715..47690- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1131.4.1 ID=mRNA_A-nodosum_M_contig1131.4.1|Name=mRNA_A-nodosum_M_contig1131.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3976bp|location=Sequence derived from alignment at A-nodosum_M_contig1131:43715..47690- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1131:43715..47690- >mRNA_A-nodosum_M_contig1131.4.1 ID=mRNA_A-nodosum_M_contig1131.4.1|Name=mRNA_A-nodosum_M_contig1131.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig1131:43715..47690- (Ascophyllum nodosum dioecious)back to top |