mRNA_A-nodosum_M_contig1131.12.5 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1131.12.5 vs. uniprot
Match: D8LF60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF60_ECTSI) HSP 1 Score: 337 bits (863), Expect = 2.050e-111 Identity = 163/275 (59.27%), Postives = 202/275 (73.45%), Query Frame = 1
Query: 247 LLLDVCLAGVQLTLGISMHSKTVPNFNEAIQLDCLLKVPVKYTQDECLEYLRSDRYAGMMLVWRSYNFLSLDYTKYSQRLVQLEKDGMCCGFGPPKRCTGDSRDFPRWANKNKVGFGSEKRYTCGREENWYEESYFCAQYVDETAVFLEIGGCKYDYPMGDCMDVDVGA--STRGCASVMETHMTNKIVNHALSIMGLSSLLLASVFSGCCMFWKRAYIDAMPDYVDRHVPWDSLKDKLPLSDHEKATYPRVCGEDG--AVKLDPLGMLIMGEMP 1059
LLLD LAG+QLTLG +M+S+T+P ++E+ QLDCLLK PV + D+CL Y+RSDRYAGMMLVWRSY +LSLDYTKY QRLV +E+DG+CCGFGPP RCTGD+RDFP + ++N+VGFG+++RY CG EIGGCKYDYPMG CMD+DV RGCA +E HMTNK++ HA IMGLS+L+ AS+ SGCCMFWKRAY D+MPD+VD HVPWD K+K L ++ K T + G +G A LDPLG+LIMG+MP
Sbjct: 3 LLLDFFLAGIQLTLGGTMYSRTLPEYDESFQLDCLLKEPVVNSPDDCLGYIRSDRYAGMMLVWRSYVYLSLDYTKYYQRLVTIEQDGVCCGFGPPTRCTGDARDFPSYFSENQVGFGTDRRYVCG----------------------AEIGGCKYDYPMGQCMDIDVDVLEGARGCAFELEMHMTNKVIVHAFFIMGLSALMFASMLSGCCMFWKRAYDDSMPDHVDSHVPWDPFKNKDLLGEN-KGTKSKRAGREGGPAATLDPLGVLIMGKMP 254
BLAST of mRNA_A-nodosum_M_contig1131.12.5 vs. uniprot
Match: A0A7S2W8E5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8E5_9STRA) HSP 1 Score: 172 bits (436), Expect = 1.650e-46 Identity = 102/312 (32.69%), Postives = 160/312 (51.28%), Query Frame = 1
Query: 4 CTEQNLELLSKVLHPIRHVVSFYLFFA-GYIIVGDVHLSQAFGRGMASIGALLIVCCFVNSVAASIMNAGMKRHNKCIILAGLLLDVCLAGVQLTLGISMHSKTVPNFNEAIQLDCLLKVPVKYTQDECLEYLRSDRYAGMMLVWRSYNF-LSLDYTKYSQRLVQLEKDGMCCGFGPPKRCTGDSRDFPRWANKNKV-GFGSEKRYTCGREENWYEES----YFCAQYVDETAVFLEIGGCKYDYPMGDCMDVDVGASTRGCASVMETHMTNKIVNHALSIMGLSSLLLASVFSGCCMFWKRAYIDAMPDYV 918
C +N++LL +L+ + +SF LF G +I + +A+G ++S+ +I F V+ + G K HNK ++L LL+ L VQL+L +++ P + I+ DC PV ++++C + SDRYAG LVW +YNF +++ Y L + +G CCGF P C D R +P V G+ ++R TCGRE WY+ S C Q VD AV GGC+Y+ P+GDC++ T GCAS +E + +++ A + L+ S+ + CC KR D +P Y+
Sbjct: 2 CLPKNIKLLMMILNGFK-AISFLLFIVFGAMISSNEDFQRAYGTEISSLAGGIITLAFFVPVSTFLGYKGTKMHNKFLLLVHALLEGFLLVVQLSLALALIGYAQPETSIDIRKDCSRTYPVMNSREDCQSWFESDRYAGFKLVW-AYNFEMAMIDQAYFSYLTAFQIEGKCCGFSAPLNCEDDERSYPEGLLTEGVKGYWLDQRTTCGRERTWYQPSGQDGSECNQPVDPNAVVPRYGGCRYEMPIGDCLNDVPLIDTLGCASYVEEQINGELIMQAGVVAFLTLFEFISMIAACCYCMKRKEEDRLPPYL 311
BLAST of mRNA_A-nodosum_M_contig1131.12.5 vs. uniprot
Match: A0A835Z288_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z288_9STRA) HSP 1 Score: 142 bits (359), Expect = 2.240e-36 Identity = 75/221 (33.94%), Postives = 115/221 (52.04%), Query Frame = 1
Query: 274 VQLTLGISMHSKTVPNFNEAIQLDCLL-KVPVKYTQDECLEYLRSDRYAGMMLVWRSYNFLSLDYTKYSQRLVQLEKDGMCCGFGPPKRCTGDSRDFPRWANKNKVGFG----SEKRYTCGREENWYEESYFCAQYVDETAVFLEIGGCKYDYPMGDCMDVDVGASTRGCASVMETHMTNKIVNHALSIMGLSSLLLASVFSGCCMFWKRAYIDAMPDYVD 921
+Q+ G+++ S P+ A Q CLL + C Y RS+RYA M+ VWRSYN+LS ++Y +E+DG CCGFG P+ C D+R FP + ++ +G S+ RY CG E WY E+Y+C+Q VDE+A+ +GGC GC + ++ M +I A +I+ L + A + C+ KR +D +PD+V+
Sbjct: 1 MQIASGLALRSHIAPDVPYAQQRSCLLARSATAPPTTACAAYARSERYARMLDVWRSYNYLSAGASRYYALAAHMEEDGDCCGFGAPRGCVPDARAFPAAPTRGQLHWGGDYESDARYVCGAEPGWYGETYYCSQSVDESALEPVVGGCS------------------GCGAEVDAAMARRITGDARAIVALGIVYAAGLAVAVCLAAKRPALDVLPDHVE 203
BLAST of mRNA_A-nodosum_M_contig1131.12.5 vs. uniprot
Match: K3W9V6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9V6_GLOUD) HSP 1 Score: 125 bits (315), Expect = 2.650e-29 Identity = 85/286 (29.72%), Postives = 135/286 (47.20%), Query Frame = 1
Query: 73 LFFAGYIIVGDVHLSQAFGRGMASIGALLIVCCFVNSVAASIMNAGMKRHNKCIILAGLLLDVCLAGVQLTLGISMHSKTVPNFNEAIQLDCLL-----KVPVKYTQDECLEYLRSDRYAGMMLVWRSYNFLSLDYTKYSQRLVQLEKDGMCCGFGPPKRCTGDSRDFPRWANKNKVGFGSEKRYTCGREENWYEESYFCAQYVDETAVFLEIGGCKYDYPMGDCMDVDVGASTRGCASVMETHMTNKIVNHALSIMGLSSLL--LASVFSGCCMFWKRAYIDAMP 909
L G + V + H Q G + +G LI + +AA + G + HNKC++L +L L +Q G K++P+ +Q+ CL + VK Q EC ++L SD +AGM LVW+SY S+ Y ++ +K+ CCG G P RC+ D+R FP + +R TC +SY Y T G C+YD P G C V +TRGC + + ++ ++ A+ I+ L SL+ ++ + + C+ +KR D +P
Sbjct: 25 LIILGALFVSNEHYHQLLGNTIKHVGGGLIFTGLLYLLAAVLGYYGARTHNKCLLLMLFVLLAVLLFLQTVFGSVALGKSIPSLAHEMQVACLTLGLYDSMTVKQ-QQECDQFLHSDGFAGMTLVWQSYYTNSITKGSYRAMVLNFQKENFCCGNGLPSRCSNDTRAFPASYPSTTISTKVRQRITC--------DSYGTMAYA-ATRECNTNGRCEYDLPYGSCGLNPVATTTRGCGAFVLAKLSTQV--EAIGIIVLVSLMFPISLLVASLCLCFKRRDEDVLP 298 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1131.12.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1131.12.5 >prot_A-nodosum_M_contig1131.12.5 ID=prot_A-nodosum_M_contig1131.12.5|Name=mRNA_A-nodosum_M_contig1131.12.5|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=320bp MASIGALLIVCCFVNSVAASIMNAGMKRHNKCIILAGLLLDVCLAGVQLTback to top mRNA from alignment at A-nodosum_M_contig1131:69285..73407- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1131.12.5 ID=mRNA_A-nodosum_M_contig1131.12.5|Name=mRNA_A-nodosum_M_contig1131.12.5|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4123bp|location=Sequence derived from alignment at A-nodosum_M_contig1131:69285..73407- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1131:69285..73407- >mRNA_A-nodosum_M_contig1131.12.5 ID=mRNA_A-nodosum_M_contig1131.12.5|Name=mRNA_A-nodosum_M_contig1131.12.5|organism=Ascophyllum nodosum dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at A-nodosum_M_contig1131:69285..73407- (Ascophyllum nodosum dioecious)back to top |