mRNA_A-nodosum_M_contig1130.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1130.8.1
Unique NamemRNA_A-nodosum_M_contig1130.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1130.8.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.190e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 411
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_A-nodosum_M_contig1130.8.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 248 bits (633), Expect = 7.690e-83
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 411
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_A-nodosum_M_contig1130.8.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 248 bits (632), Expect = 8.930e-83
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 411
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_A-nodosum_M_contig1130.8.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.010e-82
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 411
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_A-nodosum_M_contig1130.8.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 249 bits (636), Expect = 2.550e-82
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 411
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_A-nodosum_M_contig1130.8.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 5.170e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 411
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_A-nodosum_M_contig1130.8.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 245 bits (626), Expect = 7.340e-82
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 411
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_A-nodosum_M_contig1130.8.1 vs. uniprot
Match: A0A672FQ70_SALFA (Histone H3 n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672FQ70_SALFA)

HSP 1 Score: 245 bits (626), Expect = 9.280e-82
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 1 
Query:    1 QMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 411
            QMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    7 QMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 143
[Close]
BLAST of mRNA_A-nodosum_M_contig1130.8.1 vs. uniprot
Match: A0A6J0UZS0_9SAUR (Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A6J0UZS0_9SAUR)

HSP 1 Score: 245 bits (625), Expect = 1.040e-81
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 411
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_A-nodosum_M_contig1130.8.1 vs. uniprot
Match: D2I083_AILME (Histone H3 (Fragment) n=2 Tax=Laurasiatheria TaxID=314145 RepID=D2I083_AILME)

HSP 1 Score: 245 bits (625), Expect = 1.230e-81
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 1 
Query:    1 QMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 411
            QMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    5 QMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 141
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1130.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA2.190e-8399.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A6V1P6C6_HETAK7.690e-8398.53Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A1Z5K8H0_FISSO8.930e-8398.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA1.010e-8298.53Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC2.550e-8299.26Histone domain-containing protein n=8 Tax=Bacillar... [more]
D7G4I9_ECTSI5.170e-8298.53Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A7RJG4_NEMVE7.340e-8297.06Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]
A0A672FQ70_SALFA9.280e-8296.35Histone H3 n=4 Tax=Percomorphaceae TaxID=1489872 R... [more]
A0A6J0UZS0_9SAUR1.040e-8197.06Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
D2I083_AILME1.230e-8196.35Histone H3 (Fragment) n=2 Tax=Laurasiatheria TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1130contigA-nodosum_M_contig1130:146472..146885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI7
PFAMsHistone
Model size414
Max annot lvl2759|Eukaryota
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue1.71e-84
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size411
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866534.9904206-UTR-A-nodosum_M_contig1130:146471..1464741680866534.9904206-UTR-A-nodosum_M_contig1130:146471..146474Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1130 146472..146474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866535.0029085-CDS-A-nodosum_M_contig1130:146474..1468851680866535.0029085-CDS-A-nodosum_M_contig1130:146474..146885Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1130 146475..146885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1130.8.1prot_A-nodosum_M_contig1130.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1130 146475..146885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1130.8.1

>prot_A-nodosum_M_contig1130.8.1 ID=prot_A-nodosum_M_contig1130.8.1|Name=mRNA_A-nodosum_M_contig1130.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at A-nodosum_M_contig1130:146472..146885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1130.8.1 ID=mRNA_A-nodosum_M_contig1130.8.1|Name=mRNA_A-nodosum_M_contig1130.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=414bp|location=Sequence derived from alignment at A-nodosum_M_contig1130:146472..146885+ (Ascophyllum nodosum dioecious)
CAAATGGCTCGCACCAAGCAGACCGCGCGTAAGTCTACTGGAGGAAAGGC
CCCGCGTAAGCAGCTCGCCACCAAGGCTGCCCGCAAATCTGCGCCTGCCA
CTGGTGGTGTGAAGAAGCCCCACCGGTACAGGCCCGGCACAGTCGCTCTC
CGCGAGATCCGGCGTTACCAGAAGTCCACCGAGCTTCTAATCCGTAAGCT
TCCCTTCCAGCGTCTGGTGCGAGAGATTGCCCAGGATTTCAAGAGCGATC
TCCGCTTTCAGGGTTCTGCCGTGTTGGCTCTTCAGGAGGCCGCTGAGGCC
TACCTTGTAGGTCTCTTTGAAGACACCAATCTGTGCGCGATCCACGCCAA
GCGCGTCACCATCATGCCCAAGGACATCCAACTGGCTAGGCGCATCCGTG
GAGAGCGCTCGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1130:146472..146885+

>mRNA_A-nodosum_M_contig1130.8.1 ID=mRNA_A-nodosum_M_contig1130.8.1|Name=mRNA_A-nodosum_M_contig1130.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=411bp|location=Sequence derived from alignment at A-nodosum_M_contig1130:146472..146885+ (Ascophyllum nodosum dioecious)
ATGGCTCGCACCAAGCAGACCGCGCGTAAGTCTACTGGAGGAAAGGCCCC
GCGTAAGCAGCTCGCCACCAAGGCTGCCCGCAAATCTGCGCCTGCCACTG
GTGGTGTGAAGAAGCCCCACCGGTACAGGCCCGGCACAGTCGCTCTCCGC
GAGATCCGGCGTTACCAGAAGTCCACCGAGCTTCTAATCCGTAAGCTTCC
CTTCCAGCGTCTGGTGCGAGAGATTGCCCAGGATTTCAAGAGCGATCTCC
GCTTTCAGGGTTCTGCCGTGTTGGCTCTTCAGGAGGCCGCTGAGGCCTAC
CTTGTAGGTCTCTTTGAAGACACCAATCTGTGCGCGATCCACGCCAAGCG
CGTCACCATCATGCCCAAGGACATCCAACTGGCTAGGCGCATCCGTGGAG
AGCGCTCGTAA
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