mRNA_A-nodosum_M_contig1130.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1130.7.1
Unique NamemRNA_A-nodosum_M_contig1130.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1130.7.1 vs. uniprot
Match: UPI001E8C3F5B (Uncharacterized protein n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI001E8C3F5B)

HSP 1 Score: 212 bits (539), Expect = 1.980e-66
Identity = 109/128 (85.16%), Postives = 116/128 (90.62%), Query Frame = 1 
Query:    1 PPLDPQRTTYRFLSHHRTSYFLRTKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 384
            PP    ++  R  SH  +SY+L  +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   20 PPRTIAQSKRRRCSHRESSYYLEIRMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 147
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BLAST of mRNA_A-nodosum_M_contig1130.7.1 vs. uniprot
Match: A0A8J5IIH2_ZINOF (Histone H4 n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5IIH2_ZINOF)

HSP 1 Score: 203 bits (517), Expect = 2.160e-63
Identity = 106/122 (86.89%), Postives = 112/122 (91.80%), Query Frame = 1 
Query:   19 RTTYRFLSHHRTSYFLRTKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 384
            R  +R L  +R    +R+ MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    5 RHAFRILVPNRLQLRIRSIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126
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BLAST of mRNA_A-nodosum_M_contig1130.7.1 vs. uniprot
Match: A0A453FVP7_AEGTS (Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=A0A453FVP7_AEGTS)

HSP 1 Score: 203 bits (517), Expect = 2.300e-63
Identity = 110/130 (84.62%), Postives = 116/130 (89.23%), Query Frame = 1 
Query:    1 PPLDPQRTTYR--FLSHHRTSYFLRTKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 384
            PP +P+  T +  FLS    SY  +  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 PPTNPRSKTPKSPFLS----SYSEQAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 128
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BLAST of mRNA_A-nodosum_M_contig1130.7.1 vs. uniprot
Match: V7AF17_PHAVU (Histone H4 (Fragment) n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7AF17_PHAVU)

HSP 1 Score: 204 bits (519), Expect = 7.120e-63
Identity = 111/141 (78.72%), Postives = 117/141 (82.98%), Query Frame = 1 
Query:    1 PPLDPQ------RTTYRFLSHHRTSY-------FLRTKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 384
            PP DPQ       TTY++  +   +         L  KMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   44 PPTDPQTHHPIPNTTYKYKENFANTSDANLLIDLLFRKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 184
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BLAST of mRNA_A-nodosum_M_contig1130.7.1 vs. uniprot
Match: A0A7J8U2Z8_9ROSI (Histone H4 n=2 Tax=Gossypium klotzschianum TaxID=34286 RepID=A0A7J8U2Z8_9ROSI)

HSP 1 Score: 204 bits (519), Expect = 8.370e-63
Identity = 108/127 (85.04%), Postives = 115/127 (90.55%), Query Frame = 1 
Query:    4 PLDPQRTTYRFLSHHRTSYFLRTKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 384
            P+ P   +++FL+ H  S     KMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   69 PISPS-ISFKFLNFHSIS-----KMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 189
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BLAST of mRNA_A-nodosum_M_contig1130.7.1 vs. uniprot
Match: A0A2H6NAV7_MICLE (Histone H4 (Fragment) n=2 Tax=Amniota TaxID=32524 RepID=A0A2H6NAV7_MICLE)

HSP 1 Score: 201 bits (511), Expect = 1.110e-62
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:   58 YFLRTKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 384
            Y L  +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    4 YLLSLRMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 112
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BLAST of mRNA_A-nodosum_M_contig1130.7.1 vs. uniprot
Match: A0A0D2P4R2_GOSRA (Histone H4 n=5 Tax=Gossypium TaxID=3633 RepID=A0A0D2P4R2_GOSRA)

HSP 1 Score: 203 bits (516), Expect = 1.130e-62
Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:   25 TYRFLSHHRTSYFLRTKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 384
            +++FL+ H  S     KMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   52 SFKFLNFHSIS-----KMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 166
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BLAST of mRNA_A-nodosum_M_contig1130.7.1 vs. uniprot
Match: UPI001C056972 (histone H4-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C056972)

HSP 1 Score: 202 bits (513), Expect = 1.380e-62
Identity = 107/125 (85.60%), Postives = 111/125 (88.80%), Query Frame = 1 
Query:   40 SHHRTSY----------FLRTKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 384
            S H+T+Y          FL   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 SSHKTNYWRHCIPSTCSFLNRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 140
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BLAST of mRNA_A-nodosum_M_contig1130.7.1 vs. uniprot
Match: A0A2P5DRN5_PARAD (Histone H4 (Fragment) n=1 Tax=Parasponia andersonii TaxID=3476 RepID=A0A2P5DRN5_PARAD)

HSP 1 Score: 201 bits (511), Expect = 1.810e-62
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:   67 RTKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 384
            R KMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 RAKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 127
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BLAST of mRNA_A-nodosum_M_contig1130.7.1 vs. uniprot
Match: A0A446LD78_TRITD (Histone H4 n=2 Tax=Triticum TaxID=4564 RepID=A0A446LD78_TRITD)

HSP 1 Score: 203 bits (517), Expect = 1.910e-62
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 1 
Query:   37 LSHHRTSYFLRTK-----MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 384
            L H   S+F +TK     MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   73 LQHPHESFFSQTKTNPATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 193
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1130.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E8C3F5B1.980e-6685.16Uncharacterized protein n=1 Tax=Ziziphus jujuba va... [more]
A0A8J5IIH2_ZINOF2.160e-6386.89Histone H4 n=2 Tax=Zingiber officinale TaxID=94328... [more]
A0A453FVP7_AEGTS2.300e-6384.62Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=... [more]
V7AF17_PHAVU7.120e-6378.72Histone H4 (Fragment) n=1 Tax=Phaseolus vulgaris T... [more]
A0A7J8U2Z8_9ROSI8.370e-6385.04Histone H4 n=2 Tax=Gossypium klotzschianum TaxID=3... [more]
A0A2H6NAV7_MICLE1.110e-6294.50Histone H4 (Fragment) n=2 Tax=Amniota TaxID=32524 ... [more]
A0A0D2P4R2_GOSRA1.130e-6288.33Histone H4 n=5 Tax=Gossypium TaxID=3633 RepID=A0A0... [more]
UPI001C0569721.380e-6285.60histone H4-like n=1 Tax=Melanotaenia boesemani Tax... [more]
A0A2P5DRN5_PARAD1.810e-6297.17Histone H4 (Fragment) n=1 Tax=Parasponia andersoni... [more]
A0A446LD78_TRITD1.910e-6288.43Histone H4 n=2 Tax=Triticum TaxID=4564 RepID=A0A44... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1130contigA-nodosum_M_contig1130:145438..146224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008863623.1
PFAMsCENP-T_C
Model size787
Max annot lvl2759|Eukaryota
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue1.68e-64
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size312
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866534.933429-UTR-A-nodosum_M_contig1130:145437..1458371680866534.933429-UTR-A-nodosum_M_contig1130:145437..145837Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1130 145438..145837 -
1680866534.9578161-UTR-A-nodosum_M_contig1130:146149..1462241680866534.9578161-UTR-A-nodosum_M_contig1130:146149..146224Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1130 146150..146224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866534.94618-CDS-A-nodosum_M_contig1130:145837..1461491680866534.94618-CDS-A-nodosum_M_contig1130:145837..146149Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1130 145838..146149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1130.7.1prot_A-nodosum_M_contig1130.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1130 145838..146149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1130.7.1

>prot_A-nodosum_M_contig1130.7.1 ID=prot_A-nodosum_M_contig1130.7.1|Name=mRNA_A-nodosum_M_contig1130.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at A-nodosum_M_contig1130:145438..146224-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1130.7.1 ID=mRNA_A-nodosum_M_contig1130.7.1|Name=mRNA_A-nodosum_M_contig1130.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=787bp|location=Sequence derived from alignment at A-nodosum_M_contig1130:145438..146224- (Ascophyllum nodosum dioecious)
CCGCCACTCGATCCACAACGAACCACATATCGTTTCCTCTCTCATCATCG
TACTTCGTACTTCCTTAGAACAAAAATGTCTGGGCGCGGAAAGGGCGGGA
AGGGTCTTGGCAAGGGTGGTGCCAAGCGCCATCGCAAAGTGCTGCGGGAC
AACATCCAGGGCATCACCAAGCCCGCAATCCGCCGTTTGGCTCGCCGCGG
TGGCGTGAAGCGCATTTCTGGACTTATCTACGAGGAGACCCGTGGCGTAC
TGAAAGTGTTCCTCGAAAACGTGATCCGCGACTCGGTTACGTACACCGAA
CACGCCCGCAGGAAGACCGTGACTGCAATGGACGTGGTCTACGCACTCAA
GCGTCAGGGCCGCACTCTTTACGGTTTCGGTGGATGATCGCGCGGCTTTC
CGTTGAGGCAAGCTTACCCACCCCAACCAACTCTGGTGTTTTTCAACACC
ACCCCGACTCTTGAGAAATGGCTACTTAACTTGTGTATGTCGAACAGTCT
TTCTTGGGAACTTGCTTTGTCGTCGGGCCAGTAAGAGTGGAGTAATCTTG
CTCGTCGCCCGAGCGGTCTAGTAGGTGAGCTGCACATCTGCTAGTACGGA
AGTCGTGAGTTCGATTCTGACCAACGTAGGATTTGTGTTCTTTCTTTCGT
AACGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCAACCGTTGGTTGACA
AGTTGTAAGTGCTGAACTTGCATCGCGATAAAAAATTGTAAGGCGTGAAC
CGGGGAGAGATGGGAAGATCCCTTGTGACCACAGGCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1130:145438..146224-

>mRNA_A-nodosum_M_contig1130.7.1 ID=mRNA_A-nodosum_M_contig1130.7.1|Name=mRNA_A-nodosum_M_contig1130.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig1130:145438..146224- (Ascophyllum nodosum dioecious)
ATGTCTGGGCGCGGAAAGGGCGGGAAGGGTCTTGGCAAGGGTGGTGCCAA
GCGCCATCGCAAAGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCCG
CAATCCGCCGTTTGGCTCGCCGCGGTGGCGTGAAGCGCATTTCTGGACTT
ATCTACGAGGAGACCCGTGGCGTACTGAAAGTGTTCCTCGAAAACGTGAT
CCGCGACTCGGTTACGTACACCGAACACGCCCGCAGGAAGACCGTGACTG
CAATGGACGTGGTCTACGCACTCAAGCGTCAGGGCCGCACTCTTTACGGT
TTCGGTGGATGA
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