mRNA_A-nodosum_M_contig1130.32.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1130.32.1
Unique NamemRNA_A-nodosum_M_contig1130.32.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1130.32.1 vs. uniprot
Match: D8LBJ1_ECTSI (Protein-ribulosamine 3-kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBJ1_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 2.940e-75
Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 1
Query:    1 TRSILSKHEAQPCLVHGDLWGGNQGFVAPTSDPVIFDPATYYGDREVDLGMTHVFGGFPPAFYRGYEKEWPLQPGHQERQVIYNVYHILNHYVLFGGGYLGQAQRMLGQILRM 339
            TRSIL+KHE QPCLVHGDLWGGNQGFVAP SDPVIFDPATYYGDREVDLGMTHVFGGFPPAFYRGYEKEWPL  GHQERQV+YNVYHILNH+VLFGGGYLGQAQRM+GQIL M
Sbjct:  183 TRSILAKHEVQPCLVHGDLWGGNQGFVAPESDPVIFDPATYYGDREVDLGMTHVFGGFPPAFYRGYEKEWPLPEGHQERQVVYNVYHILNHHVLFGGGYLGQAQRMMGQILNM 295          
BLAST of mRNA_A-nodosum_M_contig1130.32.1 vs. uniprot
Match: A0A0M1JTG4_9CYAN (Uncharacterized protein n=2 Tax=Planktothricoides TaxID=132607 RepID=A0A0M1JTG4_9CYAN)

HSP 1 Score: 170 bits (431), Expect = 1.600e-50
Identity = 71/110 (64.55%), Postives = 92/110 (83.64%), Query Frame = 1
Query:   10 ILSKHEAQPCLVHGDLWGGNQGFVAPTSDPVIFDPATYYGDREVDLGMTHVFGGFPPAFYRGYEKEWPLQPGHQERQVIYNVYHILNHYVLFGGGYLGQAQRMLGQILRM 339
            IL+ H+ QP LVHGDLWGGN   V P+ +PVIFDPATYYGDREVDL MT +FGGFPPAFY+GY+  WPL+PG++ R+++YN+YHILNH+ LFGGGY GQA+ ++ ++L +
Sbjct:  181 ILAGHQPQPSLVHGDLWGGNAS-VTPSGEPVIFDPATYYGDREVDLAMTELFGGFPPAFYQGYQATWPLEPGYEHRKILYNLYHILNHFNLFGGGYAGQAKHIIQKLLNL 289          
BLAST of mRNA_A-nodosum_M_contig1130.32.1 vs. uniprot
Match: A0A7S3DTX4_9STRA (Protein-ribulosamine 3-kinase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DTX4_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.420e-49
Identity = 75/114 (65.79%), Postives = 89/114 (78.07%), Query Frame = 1
Query:    1 TRSILSKHEAQPCLVHGDLWGGNQGFVAPTSD--PVIFDPATYYGDREVDLGMTHVFGGFPPAFYRGYEKEWPLQPGHQERQVIYNVYHILNHYVLFGGGYLGQAQRMLGQILR 336
            TR +LS H+ +P LVHGDLWGGN+GF        PVIFDPATYYGDREVD+ MT+VFGG+   FY GYE EWPL  GH++R+ +YN+YHILNH VLFGGGYL QAQ M+ QIL+
Sbjct:    4 TRELLS-HKPEPSLVHGDLWGGNKGFCRDGDKVVPVIFDPATYYGDREVDVAMTYVFGGYSSDFYDGYESEWPLPEGHEKRRTVYNLYHILNHEVLFGGGYLRQAQGMIQQILK 116          
BLAST of mRNA_A-nodosum_M_contig1130.32.1 vs. uniprot
Match: A0A7S1UX02_9STRA (Protein-ribulosamine 3-kinase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UX02_9STRA)

HSP 1 Score: 159 bits (403), Expect = 7.200e-48
Identity = 74/117 (63.25%), Postives = 91/117 (77.78%), Query Frame = 1
Query:    1 TRSILSKHEAQPCLVHGDLWGGNQGFV-APTSD----PVIFDPATYYGDREVDLGMTHVFGGFPPAFYRGYEKEWPLQPGHQERQVIYNVYHILNHYVLFGGGYLGQAQRMLGQILR 336
            TR +L+ H   P L+HGDLWGGN+GF  +P  +    PVIFDPATYYGDRE D+ MT+VFGGF   FYRGYE EWPL PGH+ER+ +YN+YHILNH VLFGG YLGQA+ M+ +I++
Sbjct:   49 TRELLN-HNPAPSLIHGDLWGGNKGFAKSPDGERGMVPVIFDPATYYGDREADVAMTYVFGGFGAEFYRGYESEWPLPPGHEERRTVYNLYHILNHEVLFGG-YLGQARGMISKIMK 163          
BLAST of mRNA_A-nodosum_M_contig1130.32.1 vs. uniprot
Match: A0A0R0MHE4_9CYAN (Uncharacterized protein n=9 Tax=Cylindrospermopsis TaxID=77021 RepID=A0A0R0MHE4_9CYAN)

HSP 1 Score: 163 bits (413), Expect = 8.460e-48
Identity = 70/109 (64.22%), Postives = 91/109 (83.49%), Query Frame = 1
Query:    7 SILSKHEAQPCLVHGDLWGGNQGFVAPTSDPVIFDPATYYGDREVDLGMTHVFGGFPPAFYRGYEKEWPLQPGHQERQVIYNVYHILNHYVLFGGGYLGQAQRMLGQIL 333
            S+L+ H+ +  LVHGDLWGGN GF     +PVIFDPATY+GDREVD+ MT +FGGFPP+FY+GYE+E+PL PG+++R+V+YN+YHILNH+ LFGGGY  QA  M+G+IL
Sbjct:  179 SLLADHKPETSLVHGDLWGGNVGFTI-NGEPVIFDPATYFGDREVDIAMTELFGGFPPSFYQGYEEEFPLAPGYEKRKVLYNLYHILNHFNLFGGGYSNQANGMIGRIL 286          
BLAST of mRNA_A-nodosum_M_contig1130.32.1 vs. uniprot
Match: UPI0016891219 (fructosamine kinase family protein n=1 Tax=Nostoc sp. FACHB-110 TaxID=2692834 RepID=UPI0016891219)

HSP 1 Score: 162 bits (411), Expect = 1.610e-47
Identity = 71/109 (65.14%), Postives = 87/109 (79.82%), Query Frame = 1
Query:   10 ILSKHEAQPCLVHGDLWGGNQGFVAPTSDPVIFDPATYYGDREVDLGMTHVFGGFPPAFYRGYEKEWPLQPGHQERQVIYNVYHILNHYVLFGGGYLGQAQRMLGQILR 336
            IL++HE QP LVHGDLWGGN GF     +PVIFDPATYYGDREVD+ MT +FGGFP AFY+ Y + +PL  G++ R+++YN+YHILNH+ LFGGGY  QA RM+ QILR
Sbjct:  181 ILAEHEVQPSLVHGDLWGGNAGFTV-LGEPVIFDPATYYGDREVDIAMTELFGGFPAAFYQSYNEVFPLDAGYERRKILYNLYHILNHFNLFGGGYASQANRMIEQILR 288          
BLAST of mRNA_A-nodosum_M_contig1130.32.1 vs. uniprot
Match: UPI0019D9ABA1 (Fructosamine kinase family protein n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI0019D9ABA1)

HSP 1 Score: 162 bits (410), Expect = 2.270e-47
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 1
Query:   10 ILSKHEAQPCLVHGDLWGGNQGFVAPTSDPVIFDPATYYGDREVDLGMTHVFGGFPPAFYRGYEKEWPLQPGHQERQVIYNVYHILNHYVLFGGGYLGQAQRMLGQIL 333
            IL+ H+ QP LVHGDLWGGN   V  T +PVIFDPATY+GDREVD+ MT +FGGF PAFYRGY + WPL  G+Q+R+ +YN+YHILNH+ LFGGGY  QA RM+ +IL
Sbjct:  181 ILANHQPQPSLVHGDLWGGNAA-VTVTGEPVIFDPATYWGDREVDIAMTELFGGFSPAFYRGYNEVWPLDSGYQKRKTLYNLYHILNHFNLFGGGYASQANRMIQEIL 287          
BLAST of mRNA_A-nodosum_M_contig1130.32.1 vs. uniprot
Match: A0A7S6RG05_9CYAN (Fructosamine kinase family protein n=1 Tax=Anabaenopsis elenkinii CCIBt3563 TaxID=2779889 RepID=A0A7S6RG05_9CYAN)

HSP 1 Score: 162 bits (409), Expect = 3.050e-47
Identity = 70/108 (64.81%), Postives = 88/108 (81.48%), Query Frame = 1
Query:   10 ILSKHEAQPCLVHGDLWGGNQGFVAPTSDPVIFDPATYYGDREVDLGMTHVFGGFPPAFYRGYEKEWPLQPGHQERQVIYNVYHILNHYVLFGGGYLGQAQRMLGQIL 333
            IL+ HE QP LVHGDLWGGN GF   + +P+IFDPATY+GDREVD+ MT +FGGFP  FY+GY + +PLQPG+++R+ +YN+YHILNH+ LFGGGY  QA RM+ QIL
Sbjct:  179 ILAGHEVQPSLVHGDLWGGNAGFTL-SGEPLIFDPATYFGDREVDIAMTELFGGFPSEFYQGYHQVFPLQPGYEQRKTLYNLYHILNHFNLFGGGYGSQANRMIAQIL 285          
BLAST of mRNA_A-nodosum_M_contig1130.32.1 vs. uniprot
Match: UPI0018EF27F9 (fructosamine kinase family protein n=1 Tax=[Phormidium] sp. ETS-05 TaxID=222819 RepID=UPI0018EF27F9)

HSP 1 Score: 162 bits (409), Expect = 3.300e-47
Identity = 69/109 (63.30%), Postives = 86/109 (78.90%), Query Frame = 1
Query:   10 ILSKHEAQPCLVHGDLWGGNQGFVAPTSDPVIFDPATYYGDREVDLGMTHVFGGFPPAFYRGYEKEWPLQPGHQERQVIYNVYHILNHYVLFGGGYLGQAQRMLGQILR 336
            +L+ H+ QP LVHGDLWGGN   V    +PVIFDPATYYGDREVD+ MT +FGGF P FY+GY + WPL PG+Q+R+ +YN+YHILNH+ LFGG Y GQA RM+ ++LR
Sbjct:  181 LLANHKPQPSLVHGDLWGGNAS-VTGDGEPVIFDPATYYGDREVDIAMTELFGGFSPTFYQGYNQVWPLDPGYQQRKTLYNLYHILNHFNLFGGSYGGQANRMISELLR 288          
BLAST of mRNA_A-nodosum_M_contig1130.32.1 vs. uniprot
Match: A0A6B3L6E4_9BACT (Fructosamine kinase family protein n=1 Tax=Sulfuriroseicoccus oceanibius TaxID=2707525 RepID=A0A6B3L6E4_9BACT)

HSP 1 Score: 161 bits (408), Expect = 4.200e-47
Identity = 68/110 (61.82%), Postives = 88/110 (80.00%), Query Frame = 1
Query:    7 SILSKHEAQPCLVHGDLWGGNQGFVAPTSDPVIFDPATYYGDREVDLGMTHVFGGFPPAFYRGYEKEWPLQPGHQERQVIYNVYHILNHYVLFGGGYLGQAQRMLGQILR 336
            ++L +H  +P LVHGDLW GN GF+A  S PV+FDPA+Y+GDREVDL M+ +FGGF PAF++G ++EWPL PG+ +R+ IYN+YHILNH +LFGGGY  QAQ M+  ILR
Sbjct:  175 TVLDRHSPEPSLVHGDLWTGNAGFLASDSAPVLFDPASYFGDREVDLAMSELFGGFGPAFFKGVDEEWPLPPGYPQRRTIYNLYHILNHAILFGGGYPTQAQSMIDDILR 284          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1130.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBJ1_ECTSI2.940e-7592.04Protein-ribulosamine 3-kinase n=2 Tax=Ectocarpus T... [more]
A0A0M1JTG4_9CYAN1.600e-5064.55Uncharacterized protein n=2 Tax=Planktothricoides ... [more]
A0A7S3DTX4_9STRA1.420e-4965.79Protein-ribulosamine 3-kinase n=1 Tax=Amphiprora p... [more]
A0A7S1UX02_9STRA7.200e-4863.25Protein-ribulosamine 3-kinase n=1 Tax=Grammatophor... [more]
A0A0R0MHE4_9CYAN8.460e-4864.22Uncharacterized protein n=9 Tax=Cylindrospermopsis... [more]
UPI00168912191.610e-4765.14fructosamine kinase family protein n=1 Tax=Nostoc ... [more]
UPI0019D9ABA12.270e-4765.74Fructosamine kinase family protein n=1 Tax=Oscilla... [more]
A0A7S6RG05_9CYAN3.050e-4764.81Fructosamine kinase family protein n=1 Tax=Anabaen... [more]
UPI0018EF27F93.300e-4763.30fructosamine kinase family protein n=1 Tax=[Phormi... [more]
A0A6B3L6E4_9BACT4.200e-4761.82Fructosamine kinase family protein n=1 Tax=Sulfuri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1130contigA-nodosum_M_contig1130:246324..248127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LBJ1
PFAMsFructosamin_kin
Model size351
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.81e-76
EggNOG OGsCOG3001@1|root,KOG3021@2759|Eukaryota
Ec32 ortholog descriptionputative plastidic ribulosamine/erythrulosamine 3-kinase
Ec32 orthologEc-27_003790.1
Descriptionprotein-ribulosamine 3-kinase activity
Cds size351
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866535.5063288-CDS-A-nodosum_M_contig1130:246323..2464801680866535.5063288-CDS-A-nodosum_M_contig1130:246323..246480Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1130 246324..246480 -
1680866535.515661-CDS-A-nodosum_M_contig1130:247933..2481271680866535.515661-CDS-A-nodosum_M_contig1130:247933..248127Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1130 247934..248127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1130.32.1prot_A-nodosum_M_contig1130.32.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1130 246324..248127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1130.32.1

>prot_A-nodosum_M_contig1130.32.1 ID=prot_A-nodosum_M_contig1130.32.1|Name=mRNA_A-nodosum_M_contig1130.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=117bp
TRSILSKHEAQPCLVHGDLWGGNQGFVAPTSDPVIFDPATYYGDREVDLG
MTHVFGGFPPAFYRGYEKEWPLQPGHQERQVIYNVYHILNHYVLFGGGYL
GQAQRMLGQILRMETA*
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mRNA from alignment at A-nodosum_M_contig1130:246324..248127-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1130.32.1 ID=mRNA_A-nodosum_M_contig1130.32.1|Name=mRNA_A-nodosum_M_contig1130.32.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1804bp|location=Sequence derived from alignment at A-nodosum_M_contig1130:246324..248127- (Ascophyllum nodosum dioecious)
ACGCGATCCATTCTGTCCAAGCACGAGGCTCAGCCGTGCCTCGTGCACGG AGACTTGTGGGGAGGCAATCAGGGCTTCGTGGCGCCGACGAGCGACCCGG TGATCTTCGATCCGGCGACGTACTACGGAGACAGGGAGGTGGACCTCGGC ATGACGCACGTGTTCGGCGGGTTTCCCCCCGCGTTTTACCGAGGGTGAGT GAGTGCTTCAAACACTTAAGTACGGTATTAATATTAAATAGTAATCGTTC TTGCGAGTGGGCGGTGGTAATCCGAGGGGCTGTCTGGAGGCGCTTCACCA ACACAATCATGATGTGCAGAGCACGCACGCCTCTTCTACTCCATCCGTAA CTCCATACGCACAAGATAAGAGGCGCAACAGACGAAGTTGCTCCTCGGGC GAACCATAACTCGCACCAAGAGTAAGTATTAACCCTTCTGGGCCTACACG TGTGTTTACTGATCATTTCACTGATCATTTTTTCATTTTTGTTTAGCCCG GTCTGAGTCGTGTAGGGGATTTAAAAAAATACCCGAACTCCACATGTCTG AGGTTGCACTGCACCACAGAGCAACGCGCAGTGCAACGCTGTGCCTGCAA AGGGACAACAAAAAACACTCAAATCAAATATATATATATAAAAGGAAGTC GTTTCGTAGCACGTCCATTGTCCAGGGCACCCCACACCCATGCAGGGACA AACCTTTGAACCCATACGCATGCTCAAAAGTTGCTGCCTCGATACCATGA AAAACAACTCCTGTATAATATCAGGAGCAATGAACGAATCACCACGTCTC GAACCTCATCGTACTGTACACCTAATTACAGCAACCGCGCCGTTCTACAG CACACAACAATGGTGGAGCCCACATCTGGCGAGCCAGAACAACCGTACAA GCTATATATCCTCTCTTGCCACTATATACAATTGCAATGTACGTGGAAAA TGATGCATACTACTCTTTTAGGGAGAATGCCTGACACGGAAGCCAATCCA TGTTCGTTTGTGTATAAAGAAAAACCAGAACGCGCCTATTATACCTTCTG AGCATCCTCCGGTCAGGAGAAAAAATGTAACGTTTAGGTGGGATCAAAGG CTGCAAATACAAAAATAAAAACTAGAACCGCGCCTATACCTTCTGAGTAT CCCCCAGTCAGGGGAAAAATGTCAAAACGTTTACGTGGAACGTAGGCTGT TGTTGTTGCTATTGTAAAAGAAGGAGCATGAGTAGGTCAGAAGGATCACA TTGGACGAGACCAGAGAAGTACAGAAGTACAGTTTGTCCAGTCTGGCCTT CAAGCCGCTCCCTGATCATTTGGTAGAACGAATGCCCATGGTAGAACATC TAGGGCTGAACGCCTAACTACCACTCCACAACCACTCCACTTACTCCACA ACCCTTCTTTGCGGAAAGGTTGAAGGTTTTGACGCCCTCGAGAACCAAGA CCAGTTCTCTGCCGCTTGCGACAGAGGCTTCGTTTCACACAAAAGTAAAT CGCTGACTTGCGAACTCCAACTCTTTCTTCCGCGCCCTCGAGAAAAGACC AGTTCTCGGAAATCTCTTCGCTGACTTTCTCCTTCCGCTCGGGGAAATCT CTTGCCCTCCCTCGCGATTCCCCTGCTCCTCTACCGCGGCGCCTCAGGTA CGAGAAGGAATGGCCGTTGCAACCGGGCCACCAGGAGCGACAGGTGATCT ACAACGTGTACCACATCTTGAACCACTACGTCCTGTTCGGAGGAGGCTAT CTCGGACAAGCTCAGCGCATGCTGGGGCAGATTCTGAGGATGGAGACGGC GTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1130:246324..248127-

>mRNA_A-nodosum_M_contig1130.32.1 ID=mRNA_A-nodosum_M_contig1130.32.1|Name=mRNA_A-nodosum_M_contig1130.32.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=351bp|location=Sequence derived from alignment at A-nodosum_M_contig1130:246324..248127- (Ascophyllum nodosum dioecious)
ACGCGATCCATTCTGTCCAAGCACGAGGCTCAGCCGTGCCTCGTGCACGG
AGACTTGTGGGGAGGCAATCAGGGCTTCGTGGCGCCGACGAGCGACCCGG
TGATCTTCGATCCGGCGACGTACTACGGAGACAGGGAGGTGGACCTCGGC
ATGACGCACGTGTTCGGCGGGTTTCCCCCCGCGTTTTACCGAGGGTACGA
GAAGGAATGGCCGTTGCAACCGGGCCACCAGGAGCGACAGGTGATCTACA
ACGTGTACCACATCTTGAACCACTACGTCCTGTTCGGAGGAGGCTATCTC
GGACAAGCTCAGCGCATGCTGGGGCAGATTCTGAGGATGGAGACGGCGTA
G
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