mRNA_A-nodosum_M_contig1130.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1130.17.1
Unique NamemRNA_A-nodosum_M_contig1130.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1130.17.1 vs. uniprot
Match: D8LBI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI8_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 7.380e-7
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -3 
Query:  338 EVRRYSEPACSFGTLATAARNVVAKW 415
            EVRRYSEPACSFGTLATAARNVVAKW
Sbjct: 1768 EVRRYSEPACSFGTLATAARNVVAKW 1793
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BLAST of mRNA_A-nodosum_M_contig1130.17.1 vs. uniprot
Match: A0A6H5JNJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 7.400e-7
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -3 
Query:  338 EVRRYSEPACSFGTLATAARNVVAKW 415
            EVRRYSEPACSFGTLATAARNVVAKW
Sbjct: 1851 EVRRYSEPACSFGTLATAARNVVAKW 1876
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1130.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBI8_ECTSI7.380e-7100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNJ9_9PHAE7.400e-7100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1130contigA-nodosum_M_contig1130:215687..216103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size417
Hectar predicted targeting categorysignal peptide
Exons1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866534.1804268-CDS-A-nodosum_M_contig1130:215686..2161031680866534.1804268-CDS-A-nodosum_M_contig1130:215686..216103Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1130 215687..216103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1130.17.1prot_A-nodosum_M_contig1130.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1130 215687..216103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1130.17.1

>prot_A-nodosum_M_contig1130.17.1 ID=prot_A-nodosum_M_contig1130.17.1|Name=mRNA_A-nodosum_M_contig1130.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=139bp
MALLKWRLPSKPLFSLFFINYLFAIKYYHSSVTQQSQVTGHRPFHDFISA
FIQPNCVRHTWYSAIFLYISFSHNPVAFAIIFIRFFSPTTTNSTPEKQQI
RVIHSCPCPVAPTTWQPRSSRPSPACRRSTRARSTASLP
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mRNA from alignment at A-nodosum_M_contig1130:215687..216103-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1130.17.1 ID=mRNA_A-nodosum_M_contig1130.17.1|Name=mRNA_A-nodosum_M_contig1130.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig1130:215687..216103- (Ascophyllum nodosum dioecious)
ATGGCTCTTCTGAAATGGCGGTTACCATCGAAACCCCTTTTCTCCCTCTT
TTTCATTAATTATTTATTCGCCATCAAGTATTATCACAGTTCAGTCACGC
AGCAGTCACAAGTCACAGGTCACAGGCCTTTCCATGACTTTATTTCTGCA
TTCATCCAACCAAACTGTGTACGACATACCTGGTACTCAGCAATATTTTT
ATACATTTCATTCAGTCATAACCCCGTTGCGTTCGCCATTATATTTATAC
GTTTCTTCAGTCCTACAACTACAAACAGTACCCCAGAAAAGCAACAGATC
CGTGTGATCCACTCATGCCCATGTCCTGTCGCACCCACCACTTGGCAACC
ACGTTCCTCGCGGCCGTCGCCAGCGTGCCGAAGGAGCACGCGGGCTCGGA
GTACCGCCTCACTTCCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1130:215687..216103-

>mRNA_A-nodosum_M_contig1130.17.1 ID=mRNA_A-nodosum_M_contig1130.17.1|Name=mRNA_A-nodosum_M_contig1130.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig1130:215687..216103- (Ascophyllum nodosum dioecious)
ATGGCTCTTCTGAAATGGCGGTTACCATCGAAACCCCTTTTCTCCCTCTT
TTTCATTAATTATTTATTCGCCATCAAGTATTATCACAGTTCAGTCACGC
AGCAGTCACAAGTCACAGGTCACAGGCCTTTCCATGACTTTATTTCTGCA
TTCATCCAACCAAACTGTGTACGACATACCTGGTACTCAGCAATATTTTT
ATACATTTCATTCAGTCATAACCCCGTTGCGTTCGCCATTATATTTATAC
GTTTCTTCAGTCCTACAACTACAAACAGTACCCCAGAAAAGCAACAGATC
CGTGTGATCCACTCATGCCCATGTCCTGTCGCACCCACCACTTGGCAACC
ACGTTCCTCGCGGCCGTCGCCAGCGTGCCGAAGGAGCACGCGGGCTCGGA
GTACCGCCTCACTTCCG
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