mRNA_A-nodosum_M_contig113.86.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig113.86.1
Unique NamemRNA_A-nodosum_M_contig113.86.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig113contigA-nodosum_M_contig113:743552..745232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size358
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866527.3080409-CDS-A-nodosum_M_contig113:743551..7435901680866527.3080409-CDS-A-nodosum_M_contig113:743551..743590Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 743552..743590 -
1680866527.319895-CDS-A-nodosum_M_contig113:744914..7450941680866527.319895-CDS-A-nodosum_M_contig113:744914..745094Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 744915..745094 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866527.4407325-UTR-A-nodosum_M_contig113:745094..7452321680866527.4407325-UTR-A-nodosum_M_contig113:745094..745232Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig113 745095..745232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig113.86.1prot_A-nodosum_M_contig113.86.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig113 743552..745094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig113.86.1

>prot_A-nodosum_M_contig113.86.1 ID=prot_A-nodosum_M_contig113.86.1|Name=mRNA_A-nodosum_M_contig113.86.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=73bp
MLQLRAVYQVLGSFCHSCASATQLATGKIETAMLQAVYERSFYFTPCLLL
YEYLGPDIVKVKRPDACTYVVQR
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mRNA from alignment at A-nodosum_M_contig113:743552..745232-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig113.86.1 ID=mRNA_A-nodosum_M_contig113.86.1|Name=mRNA_A-nodosum_M_contig113.86.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1681bp|location=Sequence derived from alignment at A-nodosum_M_contig113:743552..745232- (Ascophyllum nodosum dioecious)
GATCAACGAAAAGCAACCAGCAACTGCTCTCTTGTGTCGTATGTACCAGC
ACCCCATCCTACCGCTGCCATCAACGGCTACGAACGGCGCAGGTCCCCAC
TATAGCAAACATCACGAACTTCCTTCAACAGGGGTAGGATGCTCCAGCTA
CGTGCGGTCTATCAGGTCCTTGGCTCCTTTTGCCACTCATGCGCATCGGC
TACACAGCTCGCTACCGGGAAAATAGAAACGGCGATGCTACAGGCGGTCT
ACGAACGGTCATTCTATTTTACTCCTTGTCTACTGCTGTACGAGTACCTT
GGACCAGATATTGTCAAGGTAGTTCCGGCGGCTATCGCGAAGATGTAATC
GTAATTCCGTCGACTGGTTAATACCTTGAGACACAACAGGCCGACTGCTA
ACCTTCGTCAGGAAGAGGGCGCAGCAATCTTCTGAGCTTTGTTCTCCGTA
GCGCTCCTTTACGTGCCAAAAAGAACAGATGACAGGACCCAGATGAAATA
GTCTTCATCAATTTCAGCGAAGGCATTATTGGTACTCGGGGACAGGGGAA
CAAAATTACACGTCTGATTGTTTGCTCGACCCTTGCACAAGGTTTACCGT
TTCTCACCCAGAGATGATCAGTACAAGGAGCAGCTTTACACCTGGCGATA
TCAAGGTGGGCGTCGATCCAACGCAGAGGCGTATACACCCTCTGTAATGG
GGAATCGATTTCGCTATTGTCTCTTTTGCTTGAGGTGCCGCACGCTGCTG
TAACAGTCGCCAGAAGGTTTAACTTTTTAAAGCTCAGCACTTCCGATTTT
GTTATACACCAAGATTACGTACTTGGTTAGCATTTCATGCTCGGTCGTGA
ACACACCAAGTTCGCGGAGAGTACCTACAGCAATCGAAAGGTGGTTAGCG
GTCGTATGAGGCACAAGCACGCCCGATTTTTATCTTCAAGTGATACGGAT
TTGATTCTATGTAGTTAGATAGTTCGAATCTCAACTAAGATAATCGCCTG
CTCGACGAGGTCTGGTGATGTCGCTCACGAACAGCTGCTGTCGAGGCTTT
GCTCCCAGATCGTGTACGGTAGTTCCTGTGACTTCGCGAGCTACAGTACA
AAGTCCCCGATCTCGCGCGTCTTTCGATGTTGCTACAGTATCGCCCAAAG
AATGTCGCTACCGATCCTTCTTATGCGTAACCGATCAGAGACTGAACCGG
AGCTGACGTTCCGTGACGATGTACATACTGACTGCTGTCTGTAACTCGAC
AACGTGTGTACCAAGTTACTGTACAGGCATTCTGAATGACGTGCTCTGTA
ATGGTACGCTGCCGAAGATTAATTGCACCCAAAACGCTCTCGATACATAC
TCGTCCCCTGTATTCAACAGAATTTCCGGTGTTCGAAGGAAGGGCAAGTG
CGTTATTATGTTTCACCTTTTCAGCTTCAACGCAAACACTTCAGCCATCA
ATGAATCGAAAAACACAAGCTTTGAAGGAGGATACTTATGCGACGAACGC
CCTCCCCCCCTTTCTCTGAGAGAGGTAGGCACAGTAGCAAAAGCTCATGT
TGCTTCAAAATTATCTTGCCGCCCTGTGTCGTCGACGTATCGTAGGTTTT
GTCAGTTTCTTGATCTCGCGACCCCTTCCCTGATACGAGCAGGTGAAGCG
TCCTGACGCCTGTACTTACGTGGTTCAACGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig113:743552..745232-

>mRNA_A-nodosum_M_contig113.86.1 ID=mRNA_A-nodosum_M_contig113.86.1|Name=mRNA_A-nodosum_M_contig113.86.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=219bp|location=Sequence derived from alignment at A-nodosum_M_contig113:743552..745232- (Ascophyllum nodosum dioecious)
ATGCTCCAGCTACGTGCGGTCTATCAGGTCCTTGGCTCCTTTTGCCACTC
ATGCGCATCGGCTACACAGCTCGCTACCGGGAAAATAGAAACGGCGATGC
TACAGGCGGTCTACGAACGGTCATTCTATTTTACTCCTTGTCTACTGCTG
TACGAGTACCTTGGACCAGATATTGTCAAGGTGAAGCGTCCTGACGCCTG
TACTTACGTGGTTCAACGC
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