mRNA_A-nodosum_M_contig113.130.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig113.130.1
Unique NamemRNA_A-nodosum_M_contig113.130.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig113contigA-nodosum_M_contig113:869232..869733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size504
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866527.7606595-UTR-A-nodosum_M_contig113:869231..8693731680866527.7606595-UTR-A-nodosum_M_contig113:869231..869373Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig113 869232..869373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866527.7698863-CDS-A-nodosum_M_contig113:869373..8697331680866527.7698863-CDS-A-nodosum_M_contig113:869373..869733Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 869374..869733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig113.130.1prot_A-nodosum_M_contig113.130.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig113 869374..869733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig113.130.1

>prot_A-nodosum_M_contig113.130.1 ID=prot_A-nodosum_M_contig113.130.1|Name=mRNA_A-nodosum_M_contig113.130.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=120bp
TENGEDHPFFQGVSATGSWRSAEERGARDVLIRLFPSRALFGWWRFGGRC
SAYAIRGSLAFHRREEKEAAVGWSVLSFVWYDLLRAEEMTSAVGAEGLGR
EFEFVQCRGRSEAQKWTFV*
back to top

mRNA from alignment at A-nodosum_M_contig113:869232..869733-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig113.130.1 ID=mRNA_A-nodosum_M_contig113.130.1|Name=mRNA_A-nodosum_M_contig113.130.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=502bp|location=Sequence derived from alignment at A-nodosum_M_contig113:869232..869733- (Ascophyllum nodosum dioecious)
ACGGAAAACGGAGAAGATCATCCTTTCTTTCAAGGCGTCTCGGCGACCGG
ATCATGGCGTAGCGCGGAGGAACGAGGCGCGCGAGACGTTCTGATCAGAT
TGTTCCCGTCTCGGGCGCTTTTTGGCTGGTGGCGGTTCGGTGGTCGATGC
TCGGCGTACGCGATCCGTGGTTCGCTCGCCTTTCACAGAAGAGAGGAAAA
AGAGGCCGCGGTCGGGTGGTCAGTCCTCTCCTTCGTATGGTACGACCTTC
TAAGAGCCGAAGAAATGACTTCGGCTGTCGGAGCCGAGGGGCTCGGTAGA
GAGTTTGAGTTTGTGCAATGTCGAGGTAGAAGCGAAGCTCAAAAGTGGAC
GTTTGTTTGAGCTGGGCTGACCTTAGCCTTTCGCTGTAAGCTTGATGCCG
CGGAGGGAAAATTGTCGGCAAAACGCGCTTACGACGCCCCTCGAATTTTT
CGTACGCGGGTATAGTGGTTGTTGTGGATGTACTATTTGTCATTATCATT
TT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig113:869232..869733-

>mRNA_A-nodosum_M_contig113.130.1 ID=mRNA_A-nodosum_M_contig113.130.1|Name=mRNA_A-nodosum_M_contig113.130.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at A-nodosum_M_contig113:869232..869733- (Ascophyllum nodosum dioecious)
ACGGAAAACGGAGAAGATCATCCTTTCTTTCAAGGCGTCTCGGCGACCGG
ATCATGGCGTAGCGCGGAGGAACGAGGCGCGCGAGACGTTCTGATCAGAT
TGTTCCCGTCTCGGGCGCTTTTTGGCTGGTGGCGGTTCGGTGGTCGATGC
TCGGCGTACGCGATCCGTGGTTCGCTCGCCTTTCACAGAAGAGAGGAAAA
AGAGGCCGCGGTCGGGTGGTCAGTCCTCTCCTTCGTATGGTACGACCTTC
TAAGAGCCGAAGAAATGACTTCGGCTGTCGGAGCCGAGGGGCTCGGTAGA
GAGTTTGAGTTTGTGCAATGTCGAGGTAGAAGCGAAGCTCAAAAGTGGAC
GTTTGTTTGA
back to top