mRNA_A-nodosum_M_contig113.111.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig113.111.2
Unique NamemRNA_A-nodosum_M_contig113.111.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.111.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig113contigA-nodosum_M_contig113:857267..858044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size269
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866527.4904144-UTR-A-nodosum_M_contig113:857266..8572871680866527.4904144-UTR-A-nodosum_M_contig113:857266..857287Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig113 857267..857287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866527.5067685-CDS-A-nodosum_M_contig113:857287..8573441680866527.5067685-CDS-A-nodosum_M_contig113:857287..857344Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 857288..857344 +
1680866527.51587-CDS-A-nodosum_M_contig113:857855..8580441680866527.51587-CDS-A-nodosum_M_contig113:857855..858044Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 857856..858044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig113.111.2prot_A-nodosum_M_contig113.111.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig113 857288..858044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig113.111.2

>prot_A-nodosum_M_contig113.111.2 ID=prot_A-nodosum_M_contig113.111.2|Name=mRNA_A-nodosum_M_contig113.111.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=82bp
MSVTRTARRTHEMAEELRLEEECRMKKRKCASLESEENFPDIRRKVAGSR
RRKRRRLEPPPPPATVSGDGGALRVEARTVRP
back to top

mRNA from alignment at A-nodosum_M_contig113:857267..858044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig113.111.2 ID=mRNA_A-nodosum_M_contig113.111.2|Name=mRNA_A-nodosum_M_contig113.111.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=778bp|location=Sequence derived from alignment at A-nodosum_M_contig113:857267..858044+ (Ascophyllum nodosum dioecious)
AAGCTTTATCCTTTCGCCAGGATGAGCGTGACGCGGACCGCTCGCCGCAC
CCACGAAATGGCCGAGGAGTTGCGCTTGGTAATAAAACGTTTTCATCTTG
TTAATACACGTATAACTACTGTACCAGTGTTATGAAAGGAAGTGTAGTCA
ATATTCGATTTCACTCTGCTTGCCCTTTTTATGTGTTAGAGCTGTTGTGT
TTGTTCTCGTAGCCCGCCTAAAAATACTTGGTTATAATGGAATATATATA
TATATATATTTGTGCAGTCGTGTGATGGTGATGGCGAATGTGCTCGATCC
GAACTTTCTAGCCGCGTAGGTAGATTTTCTTTTTTCTTTCTATTCTTTTT
TTCTTCTTTTTCTTTTTTTTCACAGTAAACTCGGGATGAAAGGCGATAAT
CGGGCAATGTCGACCCCCATTCAAAATCACGCTTGCCGAGTTGCCGGTCC
CACGCTTCAGTGCGGGACGGGACGGATCACGTGAATGGTCAAAGCTTCAA
GCCGTTGTGGGCGTAACTGACACGAGACACGAGACACGCCTTGCTTATCC
GTCCGCCCTTGCCGCCTTTTACTGTGTCCCCGACGTCAGGAGGAAGAATG
CCGCATGAAGAAGAGGAAGTGTGCCTCTTTGGAATCGGAAGAAAACTTTC
CTGACATCAGGAGGAAGGTGGCCGGCAGCAGGAGGAGGAAGAGGAGGAGG
TTGGAGCCTCCCCCGCCCCCCGCCACCGTGTCCGGAGATGGAGGAGCACT
CCGGGTGGAAGCGAGGACGGTCCGACCG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig113:857267..858044+

>mRNA_A-nodosum_M_contig113.111.2 ID=mRNA_A-nodosum_M_contig113.111.2|Name=mRNA_A-nodosum_M_contig113.111.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at A-nodosum_M_contig113:857267..858044+ (Ascophyllum nodosum dioecious)
ATGAGCGTGACGCGGACCGCTCGCCGCACCCACGAAATGGCCGAGGAGTT
GCGCTTGGAGGAAGAATGCCGCATGAAGAAGAGGAAGTGTGCCTCTTTGG
AATCGGAAGAAAACTTTCCTGACATCAGGAGGAAGGTGGCCGGCAGCAGG
AGGAGGAAGAGGAGGAGGTTGGAGCCTCCCCCGCCCCCCGCCACCGTGTC
CGGAGATGGAGGAGCACTCCGGGTGGAAGCGAGGACGGTCCGACCG
back to top