mRNA_A-nodosum_M_contig1129.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1129.2.1
Unique NamemRNA_A-nodosum_M_contig1129.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1129.2.1 vs. uniprot
Match: A0A6H5KBC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBC8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.060e-16
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 2 
Query:    8 VAPAFPSATHDVAGRECIPLELKVCAALKVLAAGNSFQDVATFSGMSV 151
            VAPAFP+A HDVAGREC+P+ELKVCAALK+L + +SFQ+VATFSGMSV
Sbjct:   50 VAPAFPAAAHDVAGRECVPVELKVCAALKLLVS-DSFQNVATFSGMSV 96
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BLAST of mRNA_A-nodosum_M_contig1129.2.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.560e-9
Identity = 30/49 (61.22%), Postives = 33/49 (67.35%), Query Frame = 2 
Query:    2 EAVAPAFPSATHDVAGRECIPLELKVCAALKVLAAGNSFQDVATFSGMS 148
            E V P FP+  HDV GR C+PLELKV   L+VL  GN F DVA FS MS
Sbjct:  186 EMVRPVFPAREHDVCGRLCVPLELKVLGVLQVLGRGNCFADVANFSLMS 234
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BLAST of mRNA_A-nodosum_M_contig1129.2.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.650e-8
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 2 
Query:   20 FPSATHDVAGRECIPLELKVCAALKVLAAGNSFQDVATFSGMS 148
            FP+AT DVAGR+C+PLELKV   L+VL  GN F DVA  S MS
Sbjct:   94 FPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMS 136
[Close]
BLAST of mRNA_A-nodosum_M_contig1129.2.1 vs. uniprot
Match: A0A6H5KM11_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM11_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 6.050e-7
Identity = 22/26 (84.62%), Postives = 26/26 (100.00%), Query Frame = 2 
Query:    2 EAVAPAFPSATHDVAGRECIPLELKV 79
            +AVAPAFP+ATHDVAGREC+P+ELKV
Sbjct:   48 KAVAPAFPAATHDVAGRECVPVELKV 73
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1129.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KBC8_9PHAE2.060e-1679.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE5.560e-961.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE2.650e-865.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM11_9PHAE6.050e-784.62Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1129contigA-nodosum_M_contig1129:92529..93345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size155
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866526.800692-CDS-A-nodosum_M_contig1129:92528..926041680866526.800692-CDS-A-nodosum_M_contig1129:92528..92604Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1129 92529..92604 +
1680866526.8144836-CDS-A-nodosum_M_contig1129:93267..933441680866526.8144836-CDS-A-nodosum_M_contig1129:93267..93344Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1129 93268..93344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1129.2.1prot_A-nodosum_M_contig1129.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1129 92529..93344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1129.2.1

>prot_A-nodosum_M_contig1129.2.1 ID=prot_A-nodosum_M_contig1129.2.1|Name=mRNA_A-nodosum_M_contig1129.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
RGCGARISICNTRRSWPGVHSFGIEGVRGPEGFSCGKFLPGRRYFLWNER
H
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mRNA from alignment at A-nodosum_M_contig1129:92529..93345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1129.2.1 ID=mRNA_A-nodosum_M_contig1129.2.1|Name=mRNA_A-nodosum_M_contig1129.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=817bp|location=Sequence derived from alignment at A-nodosum_M_contig1129:92529..93345+ (Ascophyllum nodosum dioecious)
CGAGGCTGTGGCGCCCGCATTTCCATCTGCAACACACGACGTAGCTGGCC
GGGAGTGCATTCCTTTGGAATTGAAGGTGCGTCTGTGTTGGTGTTCCTTT
CTGTTCCTTGTACATAGACCTGTACGTGGTGAGCCTGTATTTGTAGGCCG
GTTCAACTTTTCGGAGGCGGAATTTACTACTGCTGTAGGTAGCTCTCGCG
GCGTGGGAGGCATGAACACCCTTGTTTAACTCGTACTTGTGCCCCTCTGT
GCTTTGCACGCGTTCTAGGTGTATTATTTGAGCTTAAAATGAGAAACTCT
TTCCTCGCACAGCAGTCGTACCGCAACAATTTTTCACGCGGCGAGCTTTA
CTCCTATACAGAAGGCCTTCTGCGTGCATTCGACTCGTACTCTTGTTGGT
GCCTTTGTAGTGCTACCGGGATGCGAGTGCCAGACTTGTCAATTTCCGGG
CCCGTCGTATATAGCAGCAGTGTTTTTTTTGTAGTGTTGACATGCCCTGG
CACTGGTGCTAGTGCTACCGGAATCCGAGTTCAGAACCGAATTATTCATC
GAAACACGTTTTTTCACAACACCATCCTTTGTCACGACCAGCTAACTGCA
CAGTACGCTTGTAGCTCTACCGCAGTAGCTTATAATAGAGTCGAAAGTCT
CTTTTTGCTGCTCCACCTTACACTCCATCTGCCGCTCGCCGCTGCTGCTG
CGACCGCGCCGCTGCCGCTGCTGCTGCTGCGACCGACAGGTGTGCGCGGC
CCTGAAGGTTTTAGCTGCGGGAAATTCCTTCCAGGACGTCGCTACTTTCT
CTGGAATGAGCGTCACA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1129:92529..93345+

>mRNA_A-nodosum_M_contig1129.2.1 ID=mRNA_A-nodosum_M_contig1129.2.1|Name=mRNA_A-nodosum_M_contig1129.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig1129:92529..93345+ (Ascophyllum nodosum dioecious)
CGAGGCTGTGGCGCCCGCATTTCCATCTGCAACACACGACGTAGCTGGCC
GGGAGTGCATTCCTTTGGAATTGAAGGTGTGCGCGGCCCTGAAGGTTTTA
GCTGCGGGAAATTCCTTCCAGGACGTCGCTACTTTCTCTGGAATGAGCGT
CAC
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