mRNA_A-nodosum_M_contig1128.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1128.17.1
Unique NamemRNA_A-nodosum_M_contig1128.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1128.17.1 vs. uniprot
Match: A0A151RVI3_CAJCA (Uncharacterized protein (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RVI3_CAJCA)

HSP 1 Score: 66.6 bits (161), Expect = 1.260e-12
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 VHMGAVKRILRYFRGTPDLHITYSRHSNFDLIGFCDASYGSVDPDKAKSTSESVYFL 171
            VH+ A+KRILRY +GTP+L I++ R  NF L+G+CDA Y   D  + KSTSE  +FL
Sbjct:   35 VHLQAIKRILRYLKGTPNLGISFYRSHNFSLLGYCDADYAG-DKWERKSTSEGCHFL 90
[Close]
BLAST of mRNA_A-nodosum_M_contig1128.17.1 vs. uniprot
Match: A0A151TGU7_CAJCA (Uncharacterized protein (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGU7_CAJCA)

HSP 1 Score: 63.5 bits (153), Expect = 5.580e-12
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 VHMGAVKRILRYFRGTPDLHITYSRHSNFDLIGFCDASYGSVDPDKAKSTSESVYFL 171
            VH+ AVKRILRY +GTP+L I++ +  NF L+G+CDA Y   D  + KSTS   +FL
Sbjct:    3 VHLQAVKRILRYLKGTPNLGISFYKSQNFSLLGYCDADYAG-DKWERKSTSGGCHFL 58
[Close]
BLAST of mRNA_A-nodosum_M_contig1128.17.1 vs. uniprot
Match: A0A151RVI2_CAJCA (Copia protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RVI2_CAJCA)

HSP 1 Score: 66.6 bits (161), Expect = 1.990e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 VHMGAVKRILRYFRGTPDLHITYSRHSNFDLIGFCDASYGSVDPDKAKSTSESVYFL 171
            VH+ A+KRILRY +GTP+L I++ R  NF L+G+CDA Y   D  + KSTSE  +FL
Sbjct:  496 VHLQAIKRILRYLKGTPNLGISFYRSHNFSLLGYCDADYAG-DKWERKSTSEGCHFL 551
[Close]
BLAST of mRNA_A-nodosum_M_contig1128.17.1 vs. uniprot
Match: UPI00144725BF (secreted RxLR effector protein 161-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00144725BF)

HSP 1 Score: 63.2 bits (152), Expect = 2.190e-11
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    4 HMGAVKRILRYFRGTPDLHITYSRHSNFDLIGFCDASYGSVDPDKAKSTSESVYFL 171
            H+ AVK+ILRY +GTPDL + Y R  +FDLIG+ DA+Y     D+ KSTS + +FL
Sbjct:   33 HLKAVKKILRYLKGTPDLCLWYPRGYSFDLIGYADANYAGFHIDR-KSTSRTAHFL 87
[Close]
BLAST of mRNA_A-nodosum_M_contig1128.17.1 vs. uniprot
Match: UPI001447A879 (secreted RxLR effector protein 161-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI001447A879)

HSP 1 Score: 62.0 bits (149), Expect = 1.420e-10
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    4 HMGAVKRILRYFRGTPDLHITYSRHSNFDLIGFCDASYGSVDPDKAKSTSESVYFL 171
            H+ AVKRILRY +GTPDL + Y R  NFDL+G+ D  Y      + KSTS + YFL
Sbjct:   82 HLKAVKRILRYLKGTPDLCLWYPRGYNFDLVGYADPDYACFYVHR-KSTSRTAYFL 136
[Close]
BLAST of mRNA_A-nodosum_M_contig1128.17.1 vs. uniprot
Match: A0A1S3XY84_TOBAC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3XY84_TOBAC)

HSP 1 Score: 61.6 bits (148), Expect = 1.850e-10
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    4 HMGAVKRILRYFRGTPDLHITYSRHSNFDLIGFCDASYGSVDPDKAKSTSESVYFL 171
            H+ A+KRILRY +GTPDL + Y R  +FDL+G+ DA Y     D+ KSTS   +FL
Sbjct:   66 HLKAIKRILRYLKGTPDLCLWYPRGYSFDLVGYADADYAGFHVDR-KSTSGIAHFL 120
[Close]
BLAST of mRNA_A-nodosum_M_contig1128.17.1 vs. uniprot
Match: A0A151SJZ5_CAJCA (Uncharacterized protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SJZ5_CAJCA)

HSP 1 Score: 60.8 bits (146), Expect = 2.050e-10
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 VHMGAVKRILRYFRGTPDLHITYSRHSNFDLIGFCDASYGSVDPDKAKSTSESVYFL 171
            VH+ AVKRILRY +GT +L I + R  NF L+G+CDA Y   D  + KSTS   +FL
Sbjct:   32 VHLQAVKRILRYLKGTANLGINFYRSQNFSLLGYCDADYAR-DKWERKSTSGGCHFL 87
[Close]
BLAST of mRNA_A-nodosum_M_contig1128.17.1 vs. uniprot
Match: UPI0014468745 (secreted RxLR effector protein 161-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI0014468745)

HSP 1 Score: 62.0 bits (149), Expect = 2.390e-10
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    4 HMGAVKRILRYFRGTPDLHITYSRHSNFDLIGFCDASYGSVDPDKAKSTSESVYFL 171
            H+ AVKRILRY +GTPDL + Y R   FDL+G+ DA Y     D+ KSTS + +FL
Sbjct:   33 HLKAVKRILRYIKGTPDLCLWYPRRYKFDLVGYVDADYVGFHVDR-KSTSGTTHFL 87
[Close]
BLAST of mRNA_A-nodosum_M_contig1128.17.1 vs. uniprot
Match: A0A151S8M5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S8M5_CAJCA)

HSP 1 Score: 63.2 bits (152), Expect = 2.790e-10
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 VHMGAVKRILRYFRGTPDLHITYSRHSNFDLIGFCDASYGSVDPDKAKSTSESVYFL 171
            VH  AVKRILRY +GTP+L I++ R  NF L+G+CDA Y   D  + KSTS   +FL
Sbjct:  183 VHFQAVKRILRYIKGTPNLGISFYRSHNFSLLGYCDADYVG-DKWERKSTSRGCHFL 238
[Close]
BLAST of mRNA_A-nodosum_M_contig1128.17.1 vs. uniprot
Match: A0A151RSR7_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RSR7_CAJCA)

HSP 1 Score: 62.4 bits (150), Expect = 3.270e-10
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 VHMGAVKRILRYFRGTPDLHITYSRHSNFDLIGFCDASYGSVDPDKAKSTSESVYFL 171
            VH+ AVKRILRY +GTP+L I++ R  NF L+G+CDA Y   D  + KS S   +FL
Sbjct:  131 VHLQAVKRILRYLKGTPNLGISFYRSQNFSLLGYCDADYAG-DKWERKSNSGRCHFL 186
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1128.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151RVI3_CAJCA1.260e-1254.39Uncharacterized protein (Fragment) n=1 Tax=Cajanus... [more]
A0A151TGU7_CAJCA5.580e-1252.63Uncharacterized protein (Fragment) n=1 Tax=Cajanus... [more]
A0A151RVI2_CAJCA1.990e-1154.39Copia protein n=1 Tax=Cajanus cajan TaxID=3821 Rep... [more]
UPI00144725BF2.190e-1153.57secreted RxLR effector protein 161-like n=1 Tax=Ni... [more]
UPI001447A8791.420e-1053.57secreted RxLR effector protein 161-like n=1 Tax=Ni... [more]
A0A1S3XY84_TOBAC1.850e-1051.79uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A151SJZ5_CAJCA2.050e-1052.63Uncharacterized protein n=1 Tax=Cajanus cajan TaxI... [more]
UPI00144687452.390e-1053.57secreted RxLR effector protein 161-like n=1 Tax=Ni... [more]
A0A151S8M5_CAJCA2.790e-1054.39Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RSR7_CAJCA3.270e-1052.63Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1128contigA-nodosum_M_contig1128:196477..196647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog161934.XP_010681753.1
PFAMsRVT_2
Model size171
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.89e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37YGX@33090|Viridiplantae,3GN4T@35493|Streptophyta
Descriptiontransposition, RNA-mediated
Cds size165
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866526.6122258-UTR-A-nodosum_M_contig1128:196476..1964821680866526.6122258-UTR-A-nodosum_M_contig1128:196476..196482Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1128 196477..196482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866526.6215284-CDS-A-nodosum_M_contig1128:196482..1966471680866526.6215284-CDS-A-nodosum_M_contig1128:196482..196647Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1128 196483..196647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1128.17.1prot_A-nodosum_M_contig1128.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1128 196483..196647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1128.17.1

>prot_A-nodosum_M_contig1128.17.1 ID=prot_A-nodosum_M_contig1128.17.1|Name=mRNA_A-nodosum_M_contig1128.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=55bp
MGAVKRILRYFRGTPDLHITYSRHSNFDLIGFCDASYGSVDPDKAKSTSE
SVYFL
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mRNA from alignment at A-nodosum_M_contig1128:196477..196647+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1128.17.1 ID=mRNA_A-nodosum_M_contig1128.17.1|Name=mRNA_A-nodosum_M_contig1128.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:196477..196647+ (Ascophyllum nodosum dioecious)
GTCCACATGGGGGCCGTCAAGCGCATCTTGCGTTACTTTCGCGGCACACC
CGATCTTCACATCACCTACAGTCGCCATAGCAACTTTGACCTCATTGGCT
TCTGTGACGCTTCATATGGCTCCGTCGACCCGGACAAGGCAAAGTCTACA
TCAGAAAGCGTGTACTTTCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1128:196477..196647+

>mRNA_A-nodosum_M_contig1128.17.1 ID=mRNA_A-nodosum_M_contig1128.17.1|Name=mRNA_A-nodosum_M_contig1128.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=165bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:196477..196647+ (Ascophyllum nodosum dioecious)
ATGGGGGCCGTCAAGCGCATCTTGCGTTACTTTCGCGGCACACCCGATCT
TCACATCACCTACAGTCGCCATAGCAACTTTGACCTCATTGGCTTCTGTG
ACGCTTCATATGGCTCCGTCGACCCGGACAAGGCAAAGTCTACATCAGAA
AGCGTGTACTTTCTC
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