mRNA_A-nodosum_M_contig1128.12.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: A0A6H5JU40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU40_9PHAE) HSP 1 Score: 128 bits (322), Expect = 7.180e-29 Identity = 117/342 (34.21%), Postives = 165/342 (48.25%), Query Frame = 1
Query: 571 ADVHGLAQEWTPLDASCEAGAADAIAALAELGADLTRTNRNGLIPLQLAVNEGHFDAVNALLAAGADPNQESDEDWVLYTAIV---RERRDILASLLVHGADVNKEILGRLTTLHVAVE--LQDAGVVNALLGAGADVNNGISHDD-----MSALHLAC-MARSTDIMLTLLSHGASIGVRDENGMSPLH-HAAEFCVRRDQGTERVDALLRAGADETARDSDGLTPAELARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMC--PKRAEWEG-----------RAGDYVVAR----KVGAGRSSEEEDSGNFGGLMSRLFALKEEGLFRTVVGFL 1509
AD +G A +W P+ + EA + +A+ AL GAD + G PL A + G+ + L A++ D+ +LL HGADVN+ L +A+ ++ VV LL AGA V+ H+D ++ LH AC + S D++ LL HGA++ ++D G S LH A F R VD LLR GADET + D TPA+ AR L ++A V + L APADRAWRRRG VL+C P + + G AGD AR +VG+ S S +F LM+RLF + +G+FR +V +L
Sbjct: 104 ADANGGALKWRPIHFATEANSPEAVLALVRHGADPHAEDSLGRPPLCCAADRGNMXXXXXXXXXXXXXXXXHEVCPPLLFAVLSRSNNSEDMTRALLQHGADVNE-----LDDYEIAINEAVRCGNVVKLLLKAGALVDG---HNDFHGLVLAPLHAACNFSLSCDVVKVLLGHGANVNLQDSEGTSALHLTAVRFSSRL------VDLLLRHGADETINNGDSSTPADCAR---LKAGHQEASRPVLRLLGGAPADRAWRRRGRVLLCSTPPQQKRLGPGETRTKMTRVTAGDGAAARGGTSEVGSDAHSNSNGSSDFSSLMARLFD-RPQGVFRKIVCYL 427
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 120 bits (302), Expect = 6.520e-26 Identity = 105/279 (37.63%), Postives = 132/279 (47.31%), Query Frame = 1
Query: 607 LDASCEAGAADAIAALAELGADLTRTNRNGLIPLQLAVNEGHFDAVNALLAAGADPNQESDEDW-----VLYTAIVRERRDILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISHDDMSALHLACMARSTDIMLTLLSHGASIGVRDENGMSPLHHAAEFCVRRDQG-TERVDALLRAGADETARDSDGLTPAELAR---KIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKRAEWEGRAGDYVVARKVGAGRSS 1416
L S G +A L GA + G PL LAV GH V ALLAA D + W VL A + +L ++L HG DVN+ G T+LHVA ++ L+ AGA V DD + AC + L L HGA+I RD G +PL AA R QG T VD LLR GADETA + DG T AE+ + + L RV LE APADRAWRRRG +++C RA W + +R++ A SS
Sbjct: 91 LHVSASQGQEVRVATLLAEGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVHY-RIWNRSYSVLDFAAQKGDACVLRAILQHGVDVNRRTDG-YTSLHVAALNNRVAAIDVLVEAGAHVEVE-DDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGR--QGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLC--RAFW-------IKSRRLRAASSS 355
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 116 bits (290), Expect = 1.820e-24 Identity = 99/267 (37.08%), Postives = 129/267 (48.31%), Query Frame = 1
Query: 643 IAALAELGADLTRTNRNGLIPLQLAVNEGHFDAVNALLAAGADPNQESDEDW-----VLYTAIVRERRDILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISHDDMSALHLACMARSTDIMLTLLSHGASIGVRDENGMSPLHHAAEFCVRRDQG-TERVDALLRAGADETARDSDGLTPAELAR---KIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKRAEWEGRAGDYVVARKVGAGRSS 1416
+A L GA + G PL LAV GH V ALLAA D + W VL A + +L ++L HG DVN+ G T+LHVA ++ L+ AGA V DD + AC+ + L L HG++I RD G +PL AA R QG T VD LLR GADETA + DG T AE+ + + + RV LE AP DRAWRRRG +++C RA W + AR++ A S+
Sbjct: 54 VATLLAGGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVRY-RIWNRSYSVLDLAAQKGDACVLRAILQHGVDVNRRTDG-YTSLHVAALNNRVAAIDVLVEAGAHVEVE-DDDDCTPFLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGR--QGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLC--RAFW-------IKARRLRAASSN 306
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: D7G0W2_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W2_ECTSI) HSP 1 Score: 102 bits (254), Expect = 9.340e-21 Identity = 93/279 (33.33%), Postives = 130/279 (46.59%), Query Frame = 1
Query: 754 LAAGADPNQESDEDWV--LYTAIVRERRDILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISHD-DMSALHLAC-MARSTDIMLTLLSHGASIGVRDE-NGMSPLHHAAEFCVRRDQGTERVDALLRAGADETARDSDGLTP-----AELARKIFLDETRRDALARVTKALERAPADRA---WRRRGTVLMC---PKRAEW----------EGRAGDYVVARKVGAGRSSEEEDSG-NFGGLMSRLFALKEEGLFRTVVGFL 1509
+AAGAD N + L ++ + D+ +L GA + T LH A +A ++ L+GAGA++ I+ D + + LHLA A + ++ L HGA + ++ +G +PLH AA+ C + E VDALL+AGADET D G TP A +A + + +A R L AP DRA W RR +MC P R + A VG+GR DS NF M L LKE+GLFR +V FL
Sbjct: 1 MAAGADVNVRDGSNGYSPLDCSVRSDGMDLTRQVLQRGAIATESSSDGCTALHWAGWNMNASAIDLLVGAGANLEAKIAADAEATPLHLAARQAGNAAVIEALARHGADVHAQETPSGNTPLHVAAQNCTT-ESSWETVDALLKAGADETRLDCQGQTPLDVLEARIAAGDLMGASVNEA-ERTRSVLVNAPKDRAQRAWSRRSFFVMCRAHPDRVRLTVVDDTTTSPRAKKTMAAAATAVGSGRRGANRDSADNFQRAMRSLIRLKEDGLFRKIVAFL 277
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE) HSP 1 Score: 100 bits (249), Expect = 1.150e-18 Identity = 97/298 (32.55%), Postives = 132/298 (44.30%), Query Frame = 1
Query: 694 GLIPLQLAVNEGHFDAVNALLAAGADPNQESDEDWV--LYTAIVRERRDILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISHDDMSALHLACMARSTDIMLTLLSHGASIGVRDENGMSPLHHAAEFCVRRDQGT-ERVDALLRAGADETARDSDGLTPAELARKIFLDETRRDALA----RVTKALERAPADRAWRRRGTVLMCPKRAEWEG-------RAGDYVVARKVGAGRSSEEEDSG--NFGGLMSRLF-------ALKEEG---LFRTVVGFL 1509
G PL L G A ALL AGAD + + HG DVN ++ +T L VA A ++ L AGA++ + + LH+A + LL HGAS+G ++ +PLH A GT E VD LLR GADETA +G T A++ + L D+LA RV K L RAPADRAWRRRG +++ RA + G R A RSSEE ++ G++S L +L +G +F +VG+L
Sbjct: 490 GCTPLHLVAMAGRAAAAQALLDAGADVALRQNGVGLSSXXXXXXXXXXXXXXXXXXHGGDVNAKVNNGITALRVASAFDKAPAIDVLTEAGANIE--AQANGSTPLHVASQEGRLAAGIALLRHGASVGKKNAAAQTPLHLVA--AKAGSPGTAEMVDLLLRRGADETAVSENGHTAADM---VVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLIL--SRAHYPGGRVQFGHRTSQAPAAGVAKRTRSSEEPSRAEIDWAGVVSMLMGDGVDPISLMGDGANLIFEKIVGYL 778
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: D7FVI9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI9_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 6.200e-18 Identity = 102/325 (31.38%), Postives = 141/325 (43.38%), Query Frame = 1
Query: 601 TPLDASCEAGAADAIAALAELGADLTRTNRNGLIPLQLAVNEGHFDAVNALLAAGADPNQES----DEDW-------VLYTAIVRERRDILASLLVHGA-DVNKEILGRLTTLHVAVEL-QDAGVVNALLGAGAD----VNNGISHDDMSALHLACMARST----DIMLTLLSHGASIGVRDENGMSPLHHAAEFCVRRDQGTERVDALLRAGADETARDSDGLTPAELARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKRAEWEGRAGDYVVARKVGA-GRSSEEEDSGNFGGLMSRLFALKEEGLFRTVVGFL 1509
T + A+ G + + AL GAD NG PL A +GH V LL A AD + DED+ L+ A ++ +LL G +++ T LH+AV + + ++ LL AGAD +N G D L AC ++ + TL+ HGA + R G +PLHHA ++ Q + LL+AGADE A + DG TP R++ ADRAWRRRG ++M R G G AR G S E+S N + L + EEG+FR VV FL
Sbjct: 122 TSIIAAALGGYNEIVIALLNKGADKDSPAANGRTPLMEASRKGHLPVVKTLLNADADVTLAAHGLTDEDYCLGDNCTALHFATAGGHLGVVNALLSKGGLEIDAVDTDGTTALHLAVIMGRSLPIMETLLVAGADPDIRINTGGVQD--CPLETACHSKDNIGTYHVCKTLIDHGADVNSRCPFGSTPLHHACDYS----QSDAVLRLLLQAGADENALNDDGDTPG--VRELL--------------------ADRAWRRRGWLVMLRLRTLKAGGDGGAAGARSAKQRGGSGGGEESFNLSEAVEWL-GVVEEGVFRNVVSFL 417
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.450e-17 Identity = 74/231 (32.03%), Postives = 112/231 (48.48%), Query Frame = 1
Query: 832 DILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISHDDMSALHLACMARSTDIMLTL---LSHGASIGVRDENGMSPLHHAAEFCVRRDQG-TERVDALLRAGADETARDSDGLTPAE-LARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKRAEWEGRAGDYVVARKVGAGRSSEEEDSGNFGGLMSRLFALKEEGLFRTVVGFL 1509
D + +L+ HGADV+ G + LH A ++ LL AGA+ + +S + LH+A + R+ TL L HGA + + G S L + A + QG E VD LLR GADET +G+ A+ + K+ ++ + V K L APADRAWRRR ++++C R + + D + L +R+ L EEG+FRT+V F+
Sbjct: 174 DFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARS-MSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGK--QGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQLSSDRIAR-------------------LEARVLGLVEEGIFRTIVRFI 382
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: D8LP53_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 2.140e-17 Identity = 86/277 (31.05%), Postives = 119/277 (42.96%), Query Frame = 1
Query: 715 AVNEGHFDAVNALLAAGADPNQESD-----------EDWVLYTAIVRERRDILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISHDDMSALHLACMARSTDIMLTLLSHGASIGVRDEN-GMSPLHHAAEFCVRRDQGTERVDALLRAGADETARDSDGLTPAELARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKRAEWEGRAGDYVVARKVGAGRSSEEEDSGNFGGLMSRLFALKEEGLFRTVVGFL 1509
A G+ V AL G D + ++ + L+ A D++ LL + ++ +T L +V V LL AGA + S + A + S D+ L LL +GA + R G S LH+A C RD VD LLR GADET DS G TP + + +V K L APADR WRRRG ++M +R + VAR E+ GG+ + L A+ +EG+ RTVVGFL
Sbjct: 201 AAESGNLPVVKALSTKGVDLDGTAEYHPSHSDIIPGQATALHAAAFGGHNDVVNFLLENSVRIDAVDGNMMTPLICSVSENHLCVSATLLEAGAAASAEDQTGTSSLSYAAASSSSVDMALLLLRYGADVNTRCYLFGSSVLHNA---CTNRDNTEALVDLLLRWGADETVVDSSGRTPMNHLTEDRFTRHSAETKDKVRKLLVNAPADRTWRRRGWLVMLCERERRKTEKKGCKVART---------EEGIVLGGMAAWLLAVTDEGVLRTVVGFL 465
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: D8LCR2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR2_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 1.630e-16 Identity = 93/279 (33.33%), Postives = 130/279 (46.59%), Query Frame = 1
Query: 730 HFDAVNALLAAGADPNQ--ESDEDWVLYTAIVRERRD--ILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADV------------NNGISHDDMSALHLACMARSTDIMLTLLSHG-ASIGVRDENGMSPLHHAAEFCVRRDQGTERV--DALLRAGADETARDSDGLTPAELARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKRAEWEGRAGDYVVARKVGAGRSSEEEDSGNFGGLMSRLFALKEEGLFRTVVGFL 1509
H ALL AGA PN + + V ++ + RR+ + ++L+ GADV + LH AV + VV+AL+ GADV + G M+ LH A + ML LL G A+ +DE+G SPLH C+ + D LLR+GADETA D D TPA++ + E L ++ L APADRAWRRRGT++M + A+ V A E+ ++ RL L+ E LFR +V FL
Sbjct: 137 HVGVAKALLKAGAGPNVLFTTGDPTVRFSPLYLARRNAAMTSALVGMGADVTSVDNIGYSALHWAVRDGRSDVVDALIEVGADVEARTSRMISYYSDGGHCMKGMTPLHEAAYQGNYPGMLVLLQKGRANANAQDEHGHSPLHI---LCMNPQVCSAAACSDILLRSGADETATDEDRHTPADI---MASSEGHNGWLQQL---LANAPADRAWRRRGTLVM--------------LRAQGVQA------ENEATTDAVLPRLVDLQNEALFRHIVRFL 386
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 2.590e-16 Identity = 88/299 (29.43%), Postives = 131/299 (43.81%), Query Frame = 1
Query: 691 NGLIPLQLAVNEGHFDAVNALLAAGADPN-QESDEDW-VLYTAIVRERRDILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISH-DDMSALHLACMARSTDIMLTLLSHGASIGVRDENGMSPLHHAAEFCVRRDQGTERVDALLRAGADETARDSDGLTPA----ELARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMC--------------PKRAEWEGRAGDYVVARKVGAGRSSEEEDSG------NFGGLMSRLFALKEEGLFRTVVGF 1506
+G PL +A +GH V LLAAGAD + +E D N+ ++ + LH A V LL AGA++N + D+ + +L LLS GA + + ++G + LH A R + + VD LLR GA E A D + TP E+AR++ + D R + L RAPADRAWRRRG ++M P++ E G +G+ V+ GR G + G+++ L L+ EG+FRT+VG+
Sbjct: 205 DGYTPLMVAAEQGHVATVKVLLAAGADVDVREVDYSCSAXXXXXXXXXXXXXXXXXXXXXXANEGVIDDQSPLHWAAGHNRPDCVAVLLDAGANINGRCNFLDNHXXXXXXXXXXXXEALLALLSRGARVDEKTDDGSTALHLAGH--ARGYKVDDTVDTLLRWGASEQAVDENDETPVDRLTEVAREVVWEWPELD---RALELLARAPADRAWRRRGWLVMLHERTKKERHVRGDRPRKGEKVG-SGEEVLLGDGERGRGKNARRRGGAAVKADLRGVVNVLVGLESEGVFRTIVGY 497 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1128.12.1 >prot_A-nodosum_M_contig1128.12.1 ID=prot_A-nodosum_M_contig1128.12.1|Name=mRNA_A-nodosum_M_contig1128.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=504bp LAAGCGKVSAIDALAAAGADINLRTTTNDTSALDLAAQNGEVDAMNALIRback to top mRNA from alignment at A-nodosum_M_contig1128:149704..151359- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1128.12.1 ID=mRNA_A-nodosum_M_contig1128.12.1|Name=mRNA_A-nodosum_M_contig1128.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1656bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:149704..151359- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1128:149704..151359- >mRNA_A-nodosum_M_contig1128.12.1 ID=mRNA_A-nodosum_M_contig1128.12.1|Name=mRNA_A-nodosum_M_contig1128.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:149704..151359- (Ascophyllum nodosum dioecious)back to top |