mRNA_A-nodosum_M_contig1128.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1128.12.1
Unique NamemRNA_A-nodosum_M_contig1128.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: A0A6H5JU40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU40_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 7.180e-29
Identity = 117/342 (34.21%), Postives = 165/342 (48.25%), Query Frame = 1
Query:  571 ADVHGLAQEWTPLDASCEAGAADAIAALAELGADLTRTNRNGLIPLQLAVNEGHFDAVNALLAAGADPNQESDEDWVLYTAIV---RERRDILASLLVHGADVNKEILGRLTTLHVAVE--LQDAGVVNALLGAGADVNNGISHDD-----MSALHLAC-MARSTDIMLTLLSHGASIGVRDENGMSPLH-HAAEFCVRRDQGTERVDALLRAGADETARDSDGLTPAELARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMC--PKRAEWEG-----------RAGDYVVAR----KVGAGRSSEEEDSGNFGGLMSRLFALKEEGLFRTVVGFL 1509
            AD +G A +W P+  + EA + +A+ AL   GAD    +  G  PL  A + G+                  +    L  A++       D+  +LL HGADVN+     L    +A+   ++   VV  LL AGA V+    H+D     ++ LH AC  + S D++  LL HGA++ ++D  G S LH  A  F  R       VD LLR GADET  + D  TPA+ AR   L    ++A   V + L  APADRAWRRRG VL+C  P + +  G            AGD   AR    +VG+   S    S +F  LM+RLF  + +G+FR +V +L
Sbjct:  104 ADANGGALKWRPIHFATEANSPEAVLALVRHGADPHAEDSLGRPPLCCAADRGNMXXXXXXXXXXXXXXXXHEVCPPLLFAVLSRSNNSEDMTRALLQHGADVNE-----LDDYEIAINEAVRCGNVVKLLLKAGALVDG---HNDFHGLVLAPLHAACNFSLSCDVVKVLLGHGANVNLQDSEGTSALHLTAVRFSSRL------VDLLLRHGADETINNGDSSTPADCAR---LKAGHQEASRPVLRLLGGAPADRAWRRRGRVLLCSTPPQQKRLGPGETRTKMTRVTAGDGAAARGGTSEVGSDAHSNSNGSSDFSSLMARLFD-RPQGVFRKIVCYL 427          
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 6.520e-26
Identity = 105/279 (37.63%), Postives = 132/279 (47.31%), Query Frame = 1
Query:  607 LDASCEAGAADAIAALAELGADLTRTNRNGLIPLQLAVNEGHFDAVNALLAAGADPNQESDEDW-----VLYTAIVRERRDILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISHDDMSALHLACMARSTDIMLTLLSHGASIGVRDENGMSPLHHAAEFCVRRDQG-TERVDALLRAGADETARDSDGLTPAELAR---KIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKRAEWEGRAGDYVVARKVGAGRSS 1416
            L  S   G    +A L   GA     +  G  PL LAV  GH   V ALLAA  D +      W     VL  A  +    +L ++L HG DVN+   G  T+LHVA        ++ L+ AGA V      DD +    AC     +  L L  HGA+I  RD  G +PL  AA    R  QG T  VD LLR GADETA + DG T AE+     +       +  L RV   LE APADRAWRRRG +++C  RA W       + +R++ A  SS
Sbjct:   91 LHVSASQGQEVRVATLLAEGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVHY-RIWNRSYSVLDFAAQKGDACVLRAILQHGVDVNRRTDG-YTSLHVAALNNRVAAIDVLVEAGAHVEVE-DDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGR--QGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLC--RAFW-------IKSRRLRAASSS 355          
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.820e-24
Identity = 99/267 (37.08%), Postives = 129/267 (48.31%), Query Frame = 1
Query:  643 IAALAELGADLTRTNRNGLIPLQLAVNEGHFDAVNALLAAGADPNQESDEDW-----VLYTAIVRERRDILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISHDDMSALHLACMARSTDIMLTLLSHGASIGVRDENGMSPLHHAAEFCVRRDQG-TERVDALLRAGADETARDSDGLTPAELAR---KIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKRAEWEGRAGDYVVARKVGAGRSS 1416
            +A L   GA     +  G  PL LAV  GH   V ALLAA  D +      W     VL  A  +    +L ++L HG DVN+   G  T+LHVA        ++ L+ AGA V      DD +    AC+    +  L L  HG++I  RD  G +PL  AA    R  QG T  VD LLR GADETA + DG T AE+     +       +  + RV   LE AP DRAWRRRG +++C  RA W       + AR++ A  S+
Sbjct:   54 VATLLAGGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVRY-RIWNRSYSVLDLAAQKGDACVLRAILQHGVDVNRRTDG-YTSLHVAALNNRVAAIDVLVEAGAHVEVE-DDDDCTPFLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGR--QGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLC--RAFW-------IKARRLRAASSN 306          
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: D7G0W2_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W2_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 9.340e-21
Identity = 93/279 (33.33%), Postives = 130/279 (46.59%), Query Frame = 1
Query:  754 LAAGADPNQESDEDWV--LYTAIVRERRDILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISHD-DMSALHLAC-MARSTDIMLTLLSHGASIGVRDE-NGMSPLHHAAEFCVRRDQGTERVDALLRAGADETARDSDGLTP-----AELARKIFLDETRRDALARVTKALERAPADRA---WRRRGTVLMC---PKRAEW----------EGRAGDYVVARKVGAGRSSEEEDSG-NFGGLMSRLFALKEEGLFRTVVGFL 1509
            +AAGAD N     +    L  ++  +  D+   +L  GA   +      T LH A    +A  ++ L+GAGA++   I+ D + + LHLA   A +  ++  L  HGA +  ++  +G +PLH AA+ C   +   E VDALL+AGADET  D  G TP     A +A    +  +  +A  R    L  AP DRA   W RR   +MC   P R               +      A  VG+GR     DS  NF   M  L  LKE+GLFR +V FL
Sbjct:    1 MAAGADVNVRDGSNGYSPLDCSVRSDGMDLTRQVLQRGAIATESSSDGCTALHWAGWNMNASAIDLLVGAGANLEAKIAADAEATPLHLAARQAGNAAVIEALARHGADVHAQETPSGNTPLHVAAQNCTT-ESSWETVDALLKAGADETRLDCQGQTPLDVLEARIAAGDLMGASVNEA-ERTRSVLVNAPKDRAQRAWSRRSFFVMCRAHPDRVRLTVVDDTTTSPRAKKTMAAAATAVGSGRRGANRDSADNFQRAMRSLIRLKEDGLFRKIVAFL 277          
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.150e-18
Identity = 97/298 (32.55%), Postives = 132/298 (44.30%), Query Frame = 1
Query:  694 GLIPLQLAVNEGHFDAVNALLAAGADPNQESDEDWV--LYTAIVRERRDILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISHDDMSALHLACMARSTDIMLTLLSHGASIGVRDENGMSPLHHAAEFCVRRDQGT-ERVDALLRAGADETARDSDGLTPAELARKIFLDETRRDALA----RVTKALERAPADRAWRRRGTVLMCPKRAEWEG-------RAGDYVVARKVGAGRSSEEEDSG--NFGGLMSRLF-------ALKEEG---LFRTVVGFL 1509
            G  PL L    G   A  ALL AGAD     +   +                    HG DVN ++   +T L VA     A  ++ L  AGA++      +  + LH+A         + LL HGAS+G ++    +PLH  A        GT E VD LLR GADETA   +G T A++   + L     D+LA    RV K L RAPADRAWRRRG +++   RA + G       R      A      RSSEE      ++ G++S L        +L  +G   +F  +VG+L
Sbjct:  490 GCTPLHLVAMAGRAAAAQALLDAGADVALRQNGVGLSSXXXXXXXXXXXXXXXXXXHGGDVNAKVNNGITALRVASAFDKAPAIDVLTEAGANIE--AQANGSTPLHVASQEGRLAAGIALLRHGASVGKKNAAAQTPLHLVA--AKAGSPGTAEMVDLLLRRGADETAVSENGHTAADM---VVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLIL--SRAHYPGGRVQFGHRTSQAPAAGVAKRTRSSEEPSRAEIDWAGVVSMLMGDGVDPISLMGDGANLIFEKIVGYL 778          
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: D7FVI9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI9_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 6.200e-18
Identity = 102/325 (31.38%), Postives = 141/325 (43.38%), Query Frame = 1
Query:  601 TPLDASCEAGAADAIAALAELGADLTRTNRNGLIPLQLAVNEGHFDAVNALLAAGADPNQES----DEDW-------VLYTAIVRERRDILASLLVHGA-DVNKEILGRLTTLHVAVEL-QDAGVVNALLGAGAD----VNNGISHDDMSALHLACMARST----DIMLTLLSHGASIGVRDENGMSPLHHAAEFCVRRDQGTERVDALLRAGADETARDSDGLTPAELARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKRAEWEGRAGDYVVARKVGA-GRSSEEEDSGNFGGLMSRLFALKEEGLFRTVVGFL 1509
            T + A+   G  + + AL   GAD      NG  PL  A  +GH   V  LL A AD    +    DED+        L+ A       ++ +LL  G  +++       T LH+AV + +   ++  LL AGAD    +N G   D    L  AC ++       +  TL+ HGA +  R   G +PLHHA ++     Q    +  LL+AGADE A + DG TP    R++                     ADRAWRRRG ++M   R    G  G    AR     G S   E+S N    +  L  + EEG+FR VV FL
Sbjct:  122 TSIIAAALGGYNEIVIALLNKGADKDSPAANGRTPLMEASRKGHLPVVKTLLNADADVTLAAHGLTDEDYCLGDNCTALHFATAGGHLGVVNALLSKGGLEIDAVDTDGTTALHLAVIMGRSLPIMETLLVAGADPDIRINTGGVQD--CPLETACHSKDNIGTYHVCKTLIDHGADVNSRCPFGSTPLHHACDYS----QSDAVLRLLLQAGADENALNDDGDTPG--VRELL--------------------ADRAWRRRGWLVMLRLRTLKAGGDGGAAGARSAKQRGGSGGGEESFNLSEAVEWL-GVVEEGVFRNVVSFL 417          
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.450e-17
Identity = 74/231 (32.03%), Postives = 112/231 (48.48%), Query Frame = 1
Query:  832 DILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISHDDMSALHLACMARSTDIMLTL---LSHGASIGVRDENGMSPLHHAAEFCVRRDQG-TERVDALLRAGADETARDSDGLTPAE-LARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKRAEWEGRAGDYVVARKVGAGRSSEEEDSGNFGGLMSRLFALKEEGLFRTVVGFL 1509
            D + +L+ HGADV+    G +  LH A        ++ LL AGA+  + +S    + LH+A + R+     TL   L HGA +  +   G S L + A    +  QG  E VD LLR GADET    +G+  A+ +  K+  ++   +    V K L  APADRAWRRR ++++C  R +    + D +                     L +R+  L EEG+FRT+V F+
Sbjct:  174 DFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARS-MSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGK--QGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQLSSDRIAR-------------------LEARVLGLVEEGIFRTIVRFI 382          
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: D8LP53_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.140e-17
Identity = 86/277 (31.05%), Postives = 119/277 (42.96%), Query Frame = 1
Query:  715 AVNEGHFDAVNALLAAGADPNQESD-----------EDWVLYTAIVRERRDILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISHDDMSALHLACMARSTDIMLTLLSHGASIGVRDEN-GMSPLHHAAEFCVRRDQGTERVDALLRAGADETARDSDGLTPAELARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKRAEWEGRAGDYVVARKVGAGRSSEEEDSGNFGGLMSRLFALKEEGLFRTVVGFL 1509
            A   G+   V AL   G D +  ++           +   L+ A      D++  LL +   ++      +T L  +V      V   LL AGA  +        S  + A  + S D+ L LL +GA +  R    G S LH+A   C  RD     VD LLR GADET  DS G TP     +        +   +V K L  APADR WRRRG ++M  +R   +       VAR          E+    GG+ + L A+ +EG+ RTVVGFL
Sbjct:  201 AAESGNLPVVKALSTKGVDLDGTAEYHPSHSDIIPGQATALHAAAFGGHNDVVNFLLENSVRIDAVDGNMMTPLICSVSENHLCVSATLLEAGAAASAEDQTGTSSLSYAAASSSSVDMALLLLRYGADVNTRCYLFGSSVLHNA---CTNRDNTEALVDLLLRWGADETVVDSSGRTPMNHLTEDRFTRHSAETKDKVRKLLVNAPADRTWRRRGWLVMLCERERRKTEKKGCKVART---------EEGIVLGGMAAWLLAVTDEGVLRTVVGFL 465          
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: D8LCR2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR2_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.630e-16
Identity = 93/279 (33.33%), Postives = 130/279 (46.59%), Query Frame = 1
Query:  730 HFDAVNALLAAGADPNQ--ESDEDWVLYTAIVRERRD--ILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADV------------NNGISHDDMSALHLACMARSTDIMLTLLSHG-ASIGVRDENGMSPLHHAAEFCVRRDQGTERV--DALLRAGADETARDSDGLTPAELARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKRAEWEGRAGDYVVARKVGAGRSSEEEDSGNFGGLMSRLFALKEEGLFRTVVGFL 1509
            H     ALL AGA PN    + +  V ++ +   RR+  + ++L+  GADV        + LH AV    + VV+AL+  GADV            + G     M+ LH A    +   ML LL  G A+   +DE+G SPLH     C+     +     D LLR+GADETA D D  TPA++   +   E     L ++   L  APADRAWRRRGT++M              + A+ V A      E+      ++ RL  L+ E LFR +V FL
Sbjct:  137 HVGVAKALLKAGAGPNVLFTTGDPTVRFSPLYLARRNAAMTSALVGMGADVTSVDNIGYSALHWAVRDGRSDVVDALIEVGADVEARTSRMISYYSDGGHCMKGMTPLHEAAYQGNYPGMLVLLQKGRANANAQDEHGHSPLHI---LCMNPQVCSAAACSDILLRSGADETATDEDRHTPADI---MASSEGHNGWLQQL---LANAPADRAWRRRGTLVM--------------LRAQGVQA------ENEATTDAVLPRLVDLQNEALFRHIVRFL 386          
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.590e-16
Identity = 88/299 (29.43%), Postives = 131/299 (43.81%), Query Frame = 1
Query:  691 NGLIPLQLAVNEGHFDAVNALLAAGADPN-QESDEDW-VLYTAIVRERRDILASLLVHGADVNKEILGRLTTLHVAVELQDAGVVNALLGAGADVNNGISH-DDMSALHLACMARSTDIMLTLLSHGASIGVRDENGMSPLHHAAEFCVRRDQGTERVDALLRAGADETARDSDGLTPA----ELARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMC--------------PKRAEWEGRAGDYVVARKVGAGRSSEEEDSG------NFGGLMSRLFALKEEGLFRTVVGF 1506
            +G  PL +A  +GH   V  LLAAGAD + +E D                            N+ ++   + LH A        V  LL AGA++N   +  D+             + +L LLS GA +  + ++G + LH A     R  +  + VD LLR GA E A D +  TP     E+AR++  +    D   R  + L RAPADRAWRRRG ++M               P++ E  G +G+ V+      GR       G      +  G+++ L  L+ EG+FRT+VG+
Sbjct:  205 DGYTPLMVAAEQGHVATVKVLLAAGADVDVREVDYSCSAXXXXXXXXXXXXXXXXXXXXXXANEGVIDDQSPLHWAAGHNRPDCVAVLLDAGANINGRCNFLDNHXXXXXXXXXXXXEALLALLSRGARVDEKTDDGSTALHLAGH--ARGYKVDDTVDTLLRWGASEQAVDENDETPVDRLTEVAREVVWEWPELD---RALELLARAPADRAWRRRGWLVMLHERTKKERHVRGDRPRKGEKVG-SGEEVLLGDGERGRGKNARRRGGAAVKADLRGVVNVLVGLESEGVFRTIVGY 497          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1128.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU40_9PHAE7.180e-2934.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNU3_9PHAE6.520e-2637.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6X8_ECTSI1.820e-2437.08Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G0W2_ECTSI9.340e-2133.33Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHY9_9PHAE1.150e-1832.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVI9_ECTSI6.200e-1831.38Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FKL4_ECTSI1.450e-1732.03Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D8LP53_ECTSI2.140e-1731.05EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
D8LCR2_ECTSI1.630e-1633.33Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K513_9PHAE2.590e-1629.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1128contigA-nodosum_M_contig1128:149704..151359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LTQ8
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,zf-C3HC4_3
Model size1512
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.54e-20
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size1512
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866526.480911-CDS-A-nodosum_M_contig1128:149703..1498731680866526.480911-CDS-A-nodosum_M_contig1128:149703..149873Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1128 149704..149873 -
1680866526.490326-CDS-A-nodosum_M_contig1128:149936..1510111680866526.490326-CDS-A-nodosum_M_contig1128:149936..151011Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1128 149937..151011 -
1680866526.5006132-CDS-A-nodosum_M_contig1128:151092..1513591680866526.5006132-CDS-A-nodosum_M_contig1128:151092..151359Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1128 151093..151359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1128.12.1prot_A-nodosum_M_contig1128.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1128 149704..151359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1128.12.1

>prot_A-nodosum_M_contig1128.12.1 ID=prot_A-nodosum_M_contig1128.12.1|Name=mRNA_A-nodosum_M_contig1128.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=504bp
LAAGCGKVSAIDALAAAGADINLRTTTNDTSALDLAAQNGEVDAMNALIR
NGANVRAGNASGYTALYFVADDNQAASIDFLVGAGADVNHGADKDFASST
GATPLHMAAEYGRLPALNALVEAGADVCRRTLNNESALDLAAGKGHVAVL
KALIWHGVNVNASDARGHSPLYKAAARNRVAAVRALIEAGADVHGLAQEW
TPLDASCEAGAADAIAALAELGADLTRTNRNGLIPLQLAVNEGHFDAVNA
LLAAGADPNQESDEDWVLYTAIVRERRDILASLLVHGADVNKEILGRLTT
LHVAVELQDAGVVNALLGAGADVNNGISHDDMSALHLACMARSTDIMLTL
LSHGASIGVRDENGMSPLHHAAEFCVRRDQGTERVDALLRAGADETARDS
DGLTPAELARKIFLDETRRDALARVTKALERAPADRAWRRRGTVLMCPKR
AEWEGRAGDYVVARKVGAGRSSEEEDSGNFGGLMSRLFALKEEGLFRTVV
GFL*
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mRNA from alignment at A-nodosum_M_contig1128:149704..151359-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1128.12.1 ID=mRNA_A-nodosum_M_contig1128.12.1|Name=mRNA_A-nodosum_M_contig1128.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1656bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:149704..151359- (Ascophyllum nodosum dioecious)
CTCGCGGCCGGGTGTGGGAAGGTGTCGGCTATTGACGCTCTTGCTGCAGC CGGCGCAGACATTAATCTACGAACCACAACAAACGATACCTCCGCGCTCG ACCTCGCTGCCCAAAACGGAGAGGTGGACGCCATGAACGCTCTAATCAGA AATGGAGCGAACGTGCGCGCCGGAAACGCGAGTGGTTACACTGCCTTATA CTTTGTGGCGGACGACAATCAAGCGGCGTCGATCGACTTTCTTGTTGGGG CAGGGGCAGACGTCAACGTAGAGGCTGAGCAAGGTTTCACGCCTCTGCAC ATTACGGCGCTTCTCGATTCTTCTGGGGCCGTGGATTCCCTCTTGAAGCA CGGCGCAGACAAAGACTTCGCCTCGAGCACCGGTGCGACGCCGCTTCACA TGGCGGCAGAGTATGGCCGGTTGCCGGCCCTCAACGCCCTCGTGGAGGCG GGCGCCGACGTCTGCCGGCGGACTCTAAACAACGAGTCCGCGCTCGACCT GGCTGCCGGTAAAGGTCACGTGGCCGTTTTGAAGGCGCTCATTTGGCATG GTGTGAATGTGAACGCTAGCGACGCCAGGGGTCACAGCCCGCTTTACAAA GCGGCCGCGAGAAACAGGGTGGCCGCGGTCCGCGCGCTCATCGAGGCAGG TGCTGACGTCCACGGGTTGGCACAGGAGTGGACGCCGCTTGACGCCTCAT GTGAAGCGGGCGCCGCGGACGCCATCGCCGCCCTTGCGGAACTCGGCGCT GACTTGACAAGGACCAACAGGAACGGCTTGATTCCGCTCCAGCTCGCGGT CAACGAAGGCCATTTTGACGCCGTGAACGCGTTGCTGGCGGCCGGCGCGG ACCCCAACCAAGAGTCTGATGAGGACTGGGTCTTATACACTGCCATCGTG AGAGAGAGAAGGGACATTCTCGCGAGTCTGCTTGTGCACGGGGCCGACGT GAACAAGGAAATCTTAGGGAGGTTGACGACCTTGCACGTCGCCGTGGAGC TTCAAGACGCGGGCGTAGTCAACGCTCTTCTCGGAGCCGGAGCGGACGTA AACAACGGCATTAGTCATGATGACATGAGCGCGCTACACCTCGCGTGCAT GGCGCGCAGCACCGACATAATGCTCACCCTGCTGTCGCACGGCGCGAGCA TCGGCGTCAGAGACGAAAACGGAATGTCTCCCCTGCACCACGCGGCGGAG TTCTGCGTTCGACGGGACCAGGGCACCGAACGCGTGGACGCTCTGCTAAG GGCCGGTGCCGACGAGACCGCGCGCGACTCGGACGGTCTCACCCCTGCGG AGCTCGCACGAAAAATATTCTTGGACGAAACGCGTCGCGACGCGCTCGCT CGCGTAACCAAAGCCCTAGAGCGCGCTCCTGCGGACAGGGCGTGGCGTCG CCGGGGCACGGTTTTGATGTGTCGTTCTTTTTCGCAGAGGGAAGGGAAGC AACCCGAGCCGTTGGTTGAGACTCGGGCAAAGTTAGCGAAGAGAGCGGAG TGGGAAGGGCGTGCGGGCGATTATGTTGTGGCTAGGAAGGTGGGCGCGGG GCGATCTAGCGAGGAGGAAGACTCCGGAAACTTTGGTGGCTTAATGTCGA GGCTGTTCGCCTTGAAGGAGGAGGGCCTTTTTCGGACGGTCGTGGGCTTC CTGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1128:149704..151359-

>mRNA_A-nodosum_M_contig1128.12.1 ID=mRNA_A-nodosum_M_contig1128.12.1|Name=mRNA_A-nodosum_M_contig1128.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:149704..151359- (Ascophyllum nodosum dioecious)
CTCGCGGCCGGGTGTGGGAAGGTGTCGGCTATTGACGCTCTTGCTGCAGC
CGGCGCAGACATTAATCTACGAACCACAACAAACGATACCTCCGCGCTCG
ACCTCGCTGCCCAAAACGGAGAGGTGGACGCCATGAACGCTCTAATCAGA
AATGGAGCGAACGTGCGCGCCGGAAACGCGAGTGGTTACACTGCCTTATA
CTTTGTGGCGGACGACAATCAAGCGGCGTCGATCGACTTTCTTGTTGGGG
CAGGGGCAGACGTCAACCACGGCGCAGACAAAGACTTCGCCTCGAGCACC
GGTGCGACGCCGCTTCACATGGCGGCAGAGTATGGCCGGTTGCCGGCCCT
CAACGCCCTCGTGGAGGCGGGCGCCGACGTCTGCCGGCGGACTCTAAACA
ACGAGTCCGCGCTCGACCTGGCTGCCGGTAAAGGTCACGTGGCCGTTTTG
AAGGCGCTCATTTGGCATGGTGTGAATGTGAACGCTAGCGACGCCAGGGG
TCACAGCCCGCTTTACAAAGCGGCCGCGAGAAACAGGGTGGCCGCGGTCC
GCGCGCTCATCGAGGCAGGTGCTGACGTCCACGGGTTGGCACAGGAGTGG
ACGCCGCTTGACGCCTCATGTGAAGCGGGCGCCGCGGACGCCATCGCCGC
CCTTGCGGAACTCGGCGCTGACTTGACAAGGACCAACAGGAACGGCTTGA
TTCCGCTCCAGCTCGCGGTCAACGAAGGCCATTTTGACGCCGTGAACGCG
TTGCTGGCGGCCGGCGCGGACCCCAACCAAGAGTCTGATGAGGACTGGGT
CTTATACACTGCCATCGTGAGAGAGAGAAGGGACATTCTCGCGAGTCTGC
TTGTGCACGGGGCCGACGTGAACAAGGAAATCTTAGGGAGGTTGACGACC
TTGCACGTCGCCGTGGAGCTTCAAGACGCGGGCGTAGTCAACGCTCTTCT
CGGAGCCGGAGCGGACGTAAACAACGGCATTAGTCATGATGACATGAGCG
CGCTACACCTCGCGTGCATGGCGCGCAGCACCGACATAATGCTCACCCTG
CTGTCGCACGGCGCGAGCATCGGCGTCAGAGACGAAAACGGAATGTCTCC
CCTGCACCACGCGGCGGAGTTCTGCGTTCGACGGGACCAGGGCACCGAAC
GCGTGGACGCTCTGCTAAGGGCCGGTGCCGACGAGACCGCGCGCGACTCG
GACGGTCTCACCCCTGCGGAGCTCGCACGAAAAATATTCTTGGACGAAAC
GCGTCGCGACGCGCTCGCTCGCGTAACCAAAGCCCTAGAGCGCGCTCCTG
CGGACAGGGCGTGGCGTCGCCGGGGCACGGTTTTGATGTGTCCGAAGAGA
GCGGAGTGGGAAGGGCGTGCGGGCGATTATGTTGTGGCTAGGAAGGTGGG
CGCGGGGCGATCTAGCGAGGAGGAAGACTCCGGAAACTTTGGTGGCTTAA
TGTCGAGGCTGTTCGCCTTGAAGGAGGAGGGCCTTTTTCGGACGGTCGTG
GGCTTCCTGTGA
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