mRNA_A-nodosum_M_contig1127.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1127.11.1
Unique NamemRNA_A-nodosum_M_contig1127.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1127.11.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.830e-10
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKR 174
            +LLR++G   K    R LSY   L R +CES+E T+R RRLL+AGAL R  D RLPKR
Sbjct:  160 LLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKR 217
[Close]
BLAST of mRNA_A-nodosum_M_contig1127.11.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.530e-9
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKR 174
            +LLR++G   K    R LSY   L R +C+S+E T+R RRLL+AG+L R  D RLPKR
Sbjct:   28 LLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKR 85
[Close]
BLAST of mRNA_A-nodosum_M_contig1127.11.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.600e-9
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKR 174
            +LLR++G   K    R LSY   L R +C+S+E T+R RRLL+AGAL R  D RLPKR
Sbjct:  304 LLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKR 361
[Close]
BLAST of mRNA_A-nodosum_M_contig1127.11.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.640e-9
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKR 174
            +LLR++G   K    R LSY   L R +C+S+E T+R RRLL+AGAL R  D RLPKR
Sbjct:  184 LLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKR 241
[Close]
BLAST of mRNA_A-nodosum_M_contig1127.11.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.230e-9
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKR 174
            +LLR++G   K    R LSY   L R +C+S+E T+R RRLL AGAL R  D RLPKR
Sbjct:  160 LLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLLAGALARQSDGRLPKR 217
[Close]
BLAST of mRNA_A-nodosum_M_contig1127.11.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.090e-9
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKR 174
            +LLR++G   K    R LSY   L R +C+S+E T+R RRLL+AGAL R  D RLPKR
Sbjct:  512 LLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKR 569
[Close]
BLAST of mRNA_A-nodosum_M_contig1127.11.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.060e-9
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKR 174
            +LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR
Sbjct:  139 LLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKR 196
[Close]
BLAST of mRNA_A-nodosum_M_contig1127.11.1 vs. uniprot
Match: A0A6H5JS19_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS19_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.160e-9
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKR 174
            +LLR++G   +    R LSY   L R  C+S+ETT+R RRLL+AGAL R  D RLPKR
Sbjct:  348 LLLRVIGYQREKGTYRQLSYAQTLKRVGCQSVETTIRQRRLLFAGALARQPDGRLPKR 405
[Close]
BLAST of mRNA_A-nodosum_M_contig1127.11.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.190e-9
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKR 174
            +LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR
Sbjct:  280 LLLRVIGYRRKGGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKR 337
[Close]
BLAST of mRNA_A-nodosum_M_contig1127.11.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.210e-9
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKR 174
            +L R++G   K    R LSY   L R +C+S+E T+R RRLL+AGAL R  D RLPKR
Sbjct:  423 LLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKR 480
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1127.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAH7_9PHAE3.830e-1055.17Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JYE2_9PHAE1.530e-951.72Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JBT6_9PHAE1.600e-953.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1X4_9PHAE1.640e-953.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6U6_9PHAE2.230e-953.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE3.090e-953.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JLH5_9PHAE4.060e-955.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS19_9PHAE4.160e-953.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLC4_9PHAE4.190e-955.17Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLT1_9PHAE4.210e-951.72Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1127contigA-nodosum_M_contig1127:116218..116391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size176
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866525.7057343-CDS-A-nodosum_M_contig1127:116217..1163911680866525.7057343-CDS-A-nodosum_M_contig1127:116217..116391Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1127 116218..116391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1127.11.1prot_A-nodosum_M_contig1127.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1127 116218..116391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1127.11.1

>prot_A-nodosum_M_contig1127.11.1 ID=prot_A-nodosum_M_contig1127.11.1|Name=mRNA_A-nodosum_M_contig1127.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=58bp
MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRM
GDHRLPKR
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mRNA from alignment at A-nodosum_M_contig1127:116218..116391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1127.11.1 ID=mRNA_A-nodosum_M_contig1127.11.1|Name=mRNA_A-nodosum_M_contig1127.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at A-nodosum_M_contig1127:116218..116391+ (Ascophyllum nodosum dioecious)
ATGTTGCTTCGAATTCTAGGAGCTTGGTGCAAGTCGCCGAACAAGCGCAT
CCTCTCGTACAAAGATGCCCTTCACCGAACCCAATGCGAGAGCATCGAAA
CAACCGTACGCACGAGGAGGTTGTTGTGGGCGGGGGCGCTACTCCGCATG
GGTGACCACAGGTTACCCAAAAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1127:116218..116391+

>mRNA_A-nodosum_M_contig1127.11.1 ID=mRNA_A-nodosum_M_contig1127.11.1|Name=mRNA_A-nodosum_M_contig1127.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=174bp|location=Sequence derived from alignment at A-nodosum_M_contig1127:116218..116391+ (Ascophyllum nodosum dioecious)
ATGTTGCTTCGAATTCTAGGAGCTTGGTGCAAGTCGCCGAACAAGCGCAT
CCTCTCGTACAAAGATGCCCTTCACCGAACCCAATGCGAGAGCATCGAAA
CAACCGTACGCACGAGGAGGTTGTTGTGGGCGGGGGCGCTACTCCGCATG
GGTGACCACAGGTTACCCAAAAGG
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