mRNA_A-nodosum_M_contig11263.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig11263.1.1 vs. uniprot
Match: A0A6H5JRL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL1_9PHAE) HSP 1 Score: 149 bits (377), Expect = 1.370e-37 Identity = 84/194 (43.30%), Postives = 107/194 (55.15%), Query Frame = 2
Query: 647 LGPRGQVNDQPHDWSLGNGAGEDVEIFVNRAAANKPAA---QLKP-IHDLTMSKLLYFFGHEGNRRSDDG-PRTRGAITSWVCVFNYTTAGRLHARCPDPATQHPVMNLSGRGRPKIYPVDQIRRHVHLWHFCPE---------SVCGLCSSPGKMGGRNVWTHRYKSATDA---GSDSYLLNEHHHSICRDSF 1177
+GPR DW+LG G G DVEIF NKP + P + DLTMSK++YFF H+GN+ S G PR T WV ++Y G + R PD T+HP ++L GRGRPK+YPV IRR VH++H CP+ +CG P G VW HR++ A G D YLLNE HHS +D+F
Sbjct: 226 VGPR-------DDWALGQGQGNDVEIF------NKPPPTGDDVSPSVDDLTMSKIIYFFDHKGNKNSFSGEPRPS---TWWVLAYDYVGIGNGNERVPDSVTRHPTLSLQGRGRPKVYPVQAIRRQVHMYHQCPQHSDVGSSTSQICGESQGPYSGGRDRVWHHRFRLALPGSRNGYDRYLLNEVHHSTNQDTF 403
BLAST of mRNA_A-nodosum_M_contig11263.1.1 vs. uniprot
Match: A0A6H5JZ87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ87_9PHAE) HSP 1 Score: 124 bits (312), Expect = 2.820e-30 Identity = 66/165 (40.00%), Postives = 86/165 (52.12%), Query Frame = 2
Query: 677 PHDWSLGNGAGEDVEIFVNRAAANKPAAQLKPIHDLTMSKLLYFFGHEGNRRSDDGPRTRGAITSWVCVFNYTTAGRLHARCPDPATQHPVMNLSGRGRPKIYPVDQIRRHVHLWHFCPESVCG-----LCSSPGKMGGRNVWTHRYKSA---TDAGSDSYLLNE 1147
P DW+LG G G+DV+IF P LT+SK++YFF H GN+ S T WV ++Y G + R PD T HP ++L GRGRPK+YPV IRR VH++H CP+ G LC G VW +++ A + G D YLLNE
Sbjct: 28 PDDWALGQGQGDDVKIFNIPPPTGDHGPP--PADQLTLSKIIYFFLHRGNKNSLSSEPP--PFTWWVLAYDYVGVGHGNERVPDSITGHPTLSLRGRGRPKVYPVHAIRRQVHMYHQCPQGQDGAEGSRLCGETKGAGRDRVWRLKFRLALPGSSNGYDKYLLNE 188
BLAST of mRNA_A-nodosum_M_contig11263.1.1 vs. uniprot
Match: A0A6H5KNJ3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ3_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.180e-24 Identity = 77/219 (35.16%), Postives = 111/219 (50.68%), Query Frame = 1
Query: 4 PNAGVGEAGHQRHKRGNKSGSGREMAKHHMRRVNTELALEALLDGTSWKA-RYSRRDCVHKTVRVRPGADCVATLKKLDAVWAGGFVAPRRKRDSENPSPRWYTGQFTGSANWKARLWENVLGQEASFQEKGVWQSAVQNTHMRPDKNVLLEAMVVWFACGRVEGEALCGERRCPDCWEGGRRADIQSIDIQCSRYLMDAGRTNSSGLGRLRGGNVRTA 657
P+A GE HQ +K G GR + H +R N A AL +G ++ +Y+R+ +H+ V VRPG CV ++ L A + G P +P +GQ+ GSA W A L+ N G E G W+ + ++ RPD+ LL A ++ CG C RCP+CW+G +Q I CSRY+ A S GLGRL+GG+V++A
Sbjct: 40 PDASTGEHTHQVNKSGRGVDCGRSPSLHMAKRANVNSAFLALSNGLPYRVTKYNRQTKMHEIVTVRPGDGCVRLMQSL-ASFLGHDRVPTDIHAEAVQTPAQLSGQYPGSAVWTASLFNN--GDEQQLD--GDWRPRLVSSKFRPDEQTLLRAYQTYYGCGMA---GPCSSSRCPNCWDGDT---LQQASIDCSRYIR-APMVASCGLGRLKGGDVKSA 246
BLAST of mRNA_A-nodosum_M_contig11263.1.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.570e-24 Identity = 77/219 (35.16%), Postives = 111/219 (50.68%), Query Frame = 1
Query: 4 PNAGVGEAGHQRHKRGNKSGSGREMAKHHMRRVNTELALEALLDGTSWKA-RYSRRDCVHKTVRVRPGADCVATLKKLDAVWAGGFVAPRRKRDSENPSPRWYTGQFTGSANWKARLWENVLGQEASFQEKGVWQSAVQNTHMRPDKNVLLEAMVVWFACGRVEGEALCGERRCPDCWEGGRRADIQSIDIQCSRYLMDAGRTNSSGLGRLRGGNVRTA 657
P+A GE HQ +K G GR + H +R N A AL +G ++ +Y+R+ +H+ V VRPG CV ++ L A + G P +P +GQ+ GSA W A L+ N G E G W+ + ++ RPD+ LL A ++ CG C RCP+CW+G +Q I CSRY+ A S GLGRL+GG+V++A
Sbjct: 892 PDASTGEHTHQVNKSGRGVDCGRSPSLHMAKRANVNSAFLALSNGVPYRVTKYNRQTKIHEIVTVRPGDGCVRLMQSL-ASFLGHHRVPTDIHAEAVQTPAQLSGQYPGSAVWTASLFNN--GDEQQLD--GDWRPRLVSSKFRPDEQTLLRAYQTYYGCGMA---GPCSSSRCPNCWDGDT---LQQASIDCSRYIR-APMVASCGLGRLKGGDVKSA 1098
BLAST of mRNA_A-nodosum_M_contig11263.1.1 vs. uniprot
Match: A0A6H5K7Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z2_9PHAE) HSP 1 Score: 112 bits (279), Expect = 1.720e-24 Identity = 61/163 (37.42%), Postives = 83/163 (50.92%), Query Frame = 2
Query: 677 PHDWSLGNGAGEDVEIFVNRAAANKPAAQLKPIHDLTMSKLLYFFGHEGNRRSDDGPRTRGAITSWVCVFNYTTAGRLHARCPDPATQHPVMNLSGRGR--PKIYPVDQIRRHVHLWHFCPESVCGLCSSPGKMGGRNVWTHRYKSATDAGS---DSYLLNEH 1150
P DW++G+G G+ VEIF N A L +T+S++LYF HEGNRR D P G +V + + T G ++ D TQHP L G + P +YP++ IRRHV ++H CP G VW H Y+ A S D+Y+LNEH
Sbjct: 147 PRDWAVGSGQGDAVEIFTNPKAKRD---DLSGDGHVTLSRILYFVDHEGNRRPDSTPDA-GPAVEFVLTYEFVTCGSGRSKKADSVTQHPTYWLQGGVKQVPSVYPIEAIRRHVMMYHHCP----------GSSFATGVWKHHYRLAAANPSGLRDAYMLNEH 295
BLAST of mRNA_A-nodosum_M_contig11263.1.1 vs. uniprot
Match: A0A6H5K5N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N2_9PHAE) HSP 1 Score: 115 bits (287), Expect = 3.180e-24 Identity = 78/219 (35.62%), Postives = 110/219 (50.23%), Query Frame = 1
Query: 4 PNAGVGEAGHQRHKRGNKSGSGREMAKHHMRRVNTELALEALLDGTSWKA-RYSRRDCVHKTVRVRPGADCVATLKKLDAVWAGGFVAPRRKRDSENPSPRWYTGQFTGSANWKARLWENVLGQEASFQEKGVWQSAVQNTHMRPDKNVLLEAMVVWFACGRVEGEALCGERRCPDCWEGGRRADIQSIDIQCSRYLMDAGRTNSSGLGRLRGGNVRTA 657
P+A GE HQ +K G GR A H R N A AL +G ++ RY+R++ H+ V V+PG CV ++ L A G AP + +P +GQ+ GSA W A L+ N G E G W++ + ++ RPD+ LL A ++ CG C RCPDCW+G +Q + I SRY S GLGRL+GG+V++A
Sbjct: 242 PDASTGEHTHQVNKSGRGVDCGRRAALHMALRANVNSAFLALSNGLPYRGTRYNRQNRTHEIVTVQPGDGCVRLMQSL-ASSLGHDRAPTDNHAEADQTPAELSGQYPGSAVWTASLFNN--GDEQQLD--GEWRTRLASSKFRPDEQTLLRAYRTYYGCGMA---GPCSSSRCPDCWDGDT---LQQVSIDSSRYTR-VPMVASCGLGRLKGGDVKSA 448
BLAST of mRNA_A-nodosum_M_contig11263.1.1 vs. uniprot
Match: A0A6H5JYX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX6_9PHAE) HSP 1 Score: 114 bits (285), Expect = 9.020e-24 Identity = 76/219 (34.70%), Postives = 113/219 (51.60%), Query Frame = 1
Query: 4 PNAGVGEAGHQRHKRGNKSGSGREMAKHHMRRVNTELALEALLDGTSWKA-RYSRRDCVHKTVRVRPGADCVATLKKLDAVWAGGFVAPRRKRDSENPSPRWYTGQFTGSANWKARLWENVLGQEASFQEKGVWQSAVQNTHMRPDKNVLLEAMVVWFACGRVEGEALCGERRCPDCWEGGRRADIQSIDIQCSRYLMDAGRTNSSGLGRLRGGNVRTA 657
P+A GE HQ ++ G G GR + H R AL AL +G ++ RY+R++ H+ V ++PG CV L + A + G P ++ +P +GQ+ GSA W A L+ N G E G W++ + ++ +RPD+ LL A ++ CG C RCPDCW+G +Q + I CSRY S GLGRL+GG+V++A
Sbjct: 675 PDASTGEHTHQVNRSGRGVGCGRRPSLHMALRAIINSALLALSNGLPYRVTRYNRQNRTHEIVALQPGDGCVR-LMQSPASFLGHDRVPTDIHAEKDQTPEELSGQYPGSAVWTASLFNN--GDEQQLD--GEWRTRLASSKLRPDEQTLLRAYRTYYGCGMA---GPCSSSRCPDCWDGDT---LQQVSIDCSRYTR-VPMVASCGLGRLKGGDVKSA 881
BLAST of mRNA_A-nodosum_M_contig11263.1.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE) HSP 1 Score: 108 bits (270), Expect = 7.350e-22 Identity = 67/179 (37.43%), Postives = 84/179 (46.93%), Query Frame = 2
Query: 677 PHDWSLGNGAGEDVEIFVNRAAANKPAAQLKPIHDLTMSKLLYFFGHEGNRRSDDGPRTRG-AITSWVCVFNYTTAGRLHARCPDPATQHPVMNLSGRGR--PKIYPVDQIRRHVHLWHFCPES--------------VCGLCSSPGKMGGRNVWTHRYKSAT----DAGSDSYLLNEH 1150
P W +G+G GE VEIF + A K L +T+ +LYFF +GN R GP + +V V+ Y T G ++ D T HP L G G P +YPVD IRRHVH++H CP S CGL GG NVW H Y A D+Y+LNEH
Sbjct: 819 PRHWCVGDGRGESVEIFTSPEAKRK---DLSGDGHVTLGLILYFFDLDGNPRP--GPTAAADPMMEYVLVYEYVTRGAGRSKKADSVTLHPTYWLQGGGNRVPSVYPVDAIRRHVHMYHLCPVSHFEPRAANTSALAETCGLRDDDTGKGG-NVWKHHYILAAAKPPSGQRDAYMLNEH 991
BLAST of mRNA_A-nodosum_M_contig11263.1.1 vs. uniprot
Match: A0A6H5K4J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J5_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.310e-20 Identity = 66/181 (36.46%), Postives = 82/181 (45.30%), Query Frame = 2
Query: 677 PHDWSLGNGAGEDVEIFVNRAAANKPAAQLKPIHDLTMSKLLYFFGHEGNRRSDDGPRTRGAITSWVCVFNYTTAGRLHARCPDPATQHPVMNLSGRGR--PKIYPVDQIRRHVHLWHFCPESV--------------CGL-CSSPGKMGGRNVWTHRYKSAT------DAGSDSYLLNEH 1150
P DW++G G G+DVEIF A L D+T+ K+LY F NRR G V V+ Y T G ++ D AT+HP L G P ++PV+ IRRHVH++H CP S CGL K G VW H Y AT D+YLLNEH
Sbjct: 249 PRDWAVGAGGGQDVEIFTTPKARED---DLSGGGDVTLGKILYLFDLNLNRRP--GCSAPDPAMECVLVYEYVTRGVGRSKKEDLATKHPSYWLQGGAATTPSVFPVEAIRRHVHMYHLCPTSSFEGGRIDDTSESQSCGLRMDDMAKGSGAKVWKHHYNLATAPRDRRHGHRDAYLLNEH 424
BLAST of mRNA_A-nodosum_M_contig11263.1.1 vs. uniprot
Match: A0A6H5JNW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW6_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.090e-16 Identity = 56/151 (37.09%), Postives = 81/151 (53.64%), Query Frame = 1
Query: 1 MPNAGVGEAGHQRHKRGNKSGSGREMAKHHMRRVNTELALEALLDGTSWKA-RYSRRDCVHKTVRVRPGADCVATLKKLDAVWAGGFV-APRRKRDSENPSPRWYTGQFTGSANWKARLWE--NVLGQEASFQEKGVWQSAVQNTHMRPDK 441
MP+A GEA HQR+K+ N S SG A H++RR+N +LA++AL + W R+ RR + V+ G+ C A L+ L V GG AP R + P+ QF G+A W + LWE + G +A G W+S + +RPD+
Sbjct: 34 MPDASTGEAAHQRNKKVNHSTSGCNAAAHYVRRLNMDLAIDALAEEIPWDVTRFDRRLKKYVVETVKAGSGCSAVLRSLGHVLPGGLSSAPTDARAASTPTAAQRAAQFPGAATWTSVLWEAGSPRGNDAGG---GGWESRIATGPLRPDE 181 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11263.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig11263.1.1 >prot_A-nodosum_M_contig11263.1.1 ID=prot_A-nodosum_M_contig11263.1.1|Name=mRNA_A-nodosum_M_contig11263.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=279bp MPNAGVGEAGHQRHKRGNKSGSGREMAKHHMRRVNTELALEALLDGTSWKback to top mRNA from alignment at A-nodosum_M_contig11263:1939..3115+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig11263.1.1 ID=mRNA_A-nodosum_M_contig11263.1.1|Name=mRNA_A-nodosum_M_contig11263.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1177bp|location=Sequence derived from alignment at A-nodosum_M_contig11263:1939..3115+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig11263:1939..3115+ >mRNA_A-nodosum_M_contig11263.1.1 ID=mRNA_A-nodosum_M_contig11263.1.1|Name=mRNA_A-nodosum_M_contig11263.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=837bp|location=Sequence derived from alignment at A-nodosum_M_contig11263:1939..3115+ (Ascophyllum nodosum dioecious)back to top |