mRNA_A-nodosum_M_contig1124.25.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE) HSP 1 Score: 183 bits (464), Expect = 2.060e-51 Identity = 86/120 (71.67%), Postives = 105/120 (87.50%), Query Frame = 1
Query: 1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQF 360
A+G+ DPAKSKNP AR++L+ V KVVE LNKSP K+KF+DLQ++M+ ++FK+VKHAPQRWLSLTRT+ER IRLWHVLRKLYSDEG FPL++G KD ILQLYSL+QPLS+ITRDGQ+
Sbjct: 373 AYGIHLDPAKSKNPQARDILKKVVKVVENLNKSPNFKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSITRDGQY 492
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE) HSP 1 Score: 177 bits (448), Expect = 8.980e-51 Identity = 82/122 (67.21%), Postives = 103/122 (84.43%), Query Frame = 1
Query: 1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAG 366
AFGV DP KSKNP AR++++ V KVVE LNKS L++KF+DL+ E++ +V K+VKHAPQRWLS+ RT+ERIIRLWH LRKLYSDEG VFPL++G NK+G+LQLYSL++PL ITRDGQ+ G
Sbjct: 28 AFGVHPDPTKSKNPGARDVIKVVIKVVENLNKSSNLRAKFEDLETELLGEVLKVVKHAPQRWLSMVRTMERIIRLWHALRKLYSDEGKVFPLEEGDNKNGVLQLYSLLEPLCMITRDGQYGG 149
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE) HSP 1 Score: 160 bits (405), Expect = 3.790e-45 Identity = 75/123 (60.98%), Postives = 99/123 (80.49%), Query Frame = 1
Query: 1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 369
AFG DP KSKNP R++L++V +V L+KSP L +KF+D+Q++++ ++ KI APQRWL+L RTLER+IRLWHVLRKL+SD G FPL++G NKD ILQLYSL+QPLS++TRDGQ+ GV
Sbjct: 286 AFGTHPDPQKSKNPEGRKMLKNVIGMVGTLHKSPNLTAKFEDVQVDLLGEILKIPNQAPQRWLTLVRTLERVIRLWHVLRKLHSDAGKTFPLEEGDNKDCILQLYSLLQPLSSVTRDGQYGGV 408
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE) HSP 1 Score: 155 bits (393), Expect = 3.260e-44 Identity = 73/121 (60.33%), Postives = 95/121 (78.51%), Query Frame = 1
Query: 4 FGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAG 366
FG DP KSKNP AR++L+ + +V L++S K+KFDDLQ++++ +V KI AP+RWL+L RTLER+IRLWHVLRKLYSD G FPL++G NKD ILQLYSL+QP S++TRDGQ+ G
Sbjct: 141 FGTHVDPQKSKNPEARDMLKKLINLVGTLHRSSNFKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSVTRDGQYGG 261
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE) HSP 1 Score: 161 bits (407), Expect = 1.150e-43 Identity = 78/123 (63.41%), Postives = 97/123 (78.86%), Query Frame = 1
Query: 1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 369
AFG SADP K KN AR +++ V K K+N+SP K KFD+ QL+M +V KI KHAPQRWLSL R +ERIIRLWHVLRK+Y+++G+ FPLD+G NKD ILQLYSL++PL+AITRDGQ+ V
Sbjct: 356 AFGTSADPQKPKNKDARGVVQLVIKAAAKVNQSPIFKQKFDEAQLQMTGEVLKIRKHAPQRWLSLVRVMERIIRLWHVLRKVYANDGVEFPLDKGDNKDNILQLYSLLRPLAAITRDGQYGAV 478
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE) HSP 1 Score: 155 bits (392), Expect = 7.670e-43 Identity = 73/119 (61.34%), Postives = 96/119 (80.67%), Query Frame = 1
Query: 4 FGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQF 360
FG SADP +SKN AR++++ V K K+N+S +K KF+ + LEM+ ++ KI KHAPQRWLSL +ERIIRLWHVLRK+Y+++G FPLD+G+N+D ILQLYSL+QPLSAITRDGQ+
Sbjct: 338 FGTSADPQQSKNKIARDVIKLVIKTAAKINQSTIVKQKFEKVTLEMLDEILKITKHAPQRWLSLVLVMERIIRLWHVLRKVYANDGEEFPLDKGNNRDDILQLYSLLQPLSAITRDGQY 456
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE) HSP 1 Score: 153 bits (386), Expect = 6.570e-42 Identity = 72/119 (60.50%), Postives = 94/119 (78.99%), Query Frame = 1
Query: 4 FGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQF 360
FG DP KSKNP AR++L++V +V LN+S K+KF+DLQ++++ DV KI APQRWL+ RTLER+IRLWHVLRKLYSD G FPL++G NK+ ILQL+SL+Q LS++TRDGQ+
Sbjct: 90 FGTHVDPQKSKNPEARDMLKNVISMVGTLNRSSNFKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSVTRDGQY 208
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.170e-38 Identity = 71/123 (57.72%), Postives = 94/123 (76.42%), Query Frame = 1
Query: 1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 369
AFG DP KSKNP A +L+++ +V L+KS L +KF+DLQ++++ +V KI APQRWL+L RT+ER+IRLWHVLRKLYSD G F L++G NKD I QLYSL+Q LS++TRDGQ+ G+
Sbjct: 129 AFGTHPDPQKSKNPEAHNMLKNLIGIVGTLHKSLNLTAKFEDLQVDLLGEVLKIPNQAPQRWLTLVRTMERVIRLWHVLRKLYSDAGKNFILEEGDNKDCIPQLYSLLQSLSSVTRDGQYGGL 251
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE) HSP 1 Score: 143 bits (360), Expect = 3.330e-38 Identity = 69/123 (56.10%), Postives = 94/123 (76.42%), Query Frame = 1
Query: 1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 369
AFG DP SKNP AR +L+++ ++ L+KS L +KF+DLQ++++ +V I APQRWL+L RT+ER+IRLW V+RKLYSD G FPL++G NKD I QLYSL+QPLS++TRDGQ+ G+
Sbjct: 121 AFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGL 242
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE) HSP 1 Score: 143 bits (360), Expect = 2.090e-37 Identity = 69/123 (56.10%), Postives = 94/123 (76.42%), Query Frame = 1
Query: 1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 369
AFG DP SKNP AR +L+++ ++ L+KS L +KF+DLQ++++ +V I APQRWL+L RT+ER+IRLW V+RKLYSD G FPL++G NKD I QLYSL+QPLS++TRDGQ+ G+
Sbjct: 250 AFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGL 371 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1124.25.1 >prot_A-nodosum_M_contig1124.25.1 ID=prot_A-nodosum_M_contig1124.25.1|Name=mRNA_A-nodosum_M_contig1124.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=123bp AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDback to top mRNA from alignment at A-nodosum_M_contig1124:257660..258030+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1124.25.1 ID=mRNA_A-nodosum_M_contig1124.25.1|Name=mRNA_A-nodosum_M_contig1124.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=371bp|location=Sequence derived from alignment at A-nodosum_M_contig1124:257660..258030+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1124:257660..258030+ >mRNA_A-nodosum_M_contig1124.25.1 ID=mRNA_A-nodosum_M_contig1124.25.1|Name=mRNA_A-nodosum_M_contig1124.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=369bp|location=Sequence derived from alignment at A-nodosum_M_contig1124:257660..258030+ (Ascophyllum nodosum dioecious)back to top |