mRNA_A-nodosum_M_contig1124.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1124.25.1
Unique NamemRNA_A-nodosum_M_contig1124.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.060e-51
Identity = 86/120 (71.67%), Postives = 105/120 (87.50%), Query Frame = 1
Query:    1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQF 360
            A+G+  DPAKSKNP AR++L+ V KVVE LNKSP  K+KF+DLQ++M+ ++FK+VKHAPQRWLSLTRT+ER IRLWHVLRKLYSDEG  FPL++G  KD ILQLYSL+QPLS+ITRDGQ+
Sbjct:  373 AYGIHLDPAKSKNPQARDILKKVVKVVENLNKSPNFKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSITRDGQY 492          
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 8.980e-51
Identity = 82/122 (67.21%), Postives = 103/122 (84.43%), Query Frame = 1
Query:    1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAG 366
            AFGV  DP KSKNP AR++++ V KVVE LNKS  L++KF+DL+ E++ +V K+VKHAPQRWLS+ RT+ERIIRLWH LRKLYSDEG VFPL++G NK+G+LQLYSL++PL  ITRDGQ+ G
Sbjct:   28 AFGVHPDPTKSKNPGARDVIKVVIKVVENLNKSSNLRAKFEDLETELLGEVLKVVKHAPQRWLSMVRTMERIIRLWHALRKLYSDEGKVFPLEEGDNKNGVLQLYSLLEPLCMITRDGQYGG 149          
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 3.790e-45
Identity = 75/123 (60.98%), Postives = 99/123 (80.49%), Query Frame = 1
Query:    1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 369
            AFG   DP KSKNP  R++L++V  +V  L+KSP L +KF+D+Q++++ ++ KI   APQRWL+L RTLER+IRLWHVLRKL+SD G  FPL++G NKD ILQLYSL+QPLS++TRDGQ+ GV
Sbjct:  286 AFGTHPDPQKSKNPEGRKMLKNVIGMVGTLHKSPNLTAKFEDVQVDLLGEILKIPNQAPQRWLTLVRTLERVIRLWHVLRKLHSDAGKTFPLEEGDNKDCILQLYSLLQPLSSVTRDGQYGGV 408          
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 3.260e-44
Identity = 73/121 (60.33%), Postives = 95/121 (78.51%), Query Frame = 1
Query:    4 FGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAG 366
            FG   DP KSKNP AR++L+ +  +V  L++S   K+KFDDLQ++++ +V KI   AP+RWL+L RTLER+IRLWHVLRKLYSD G  FPL++G NKD ILQLYSL+QP S++TRDGQ+ G
Sbjct:  141 FGTHVDPQKSKNPEARDMLKKLINLVGTLHRSSNFKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSVTRDGQYGG 261          
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.150e-43
Identity = 78/123 (63.41%), Postives = 97/123 (78.86%), Query Frame = 1
Query:    1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 369
            AFG SADP K KN  AR +++ V K   K+N+SP  K KFD+ QL+M  +V KI KHAPQRWLSL R +ERIIRLWHVLRK+Y+++G+ FPLD+G NKD ILQLYSL++PL+AITRDGQ+  V
Sbjct:  356 AFGTSADPQKPKNKDARGVVQLVIKAAAKVNQSPIFKQKFDEAQLQMTGEVLKIRKHAPQRWLSLVRVMERIIRLWHVLRKVYANDGVEFPLDKGDNKDNILQLYSLLRPLAAITRDGQYGAV 478          
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 7.670e-43
Identity = 73/119 (61.34%), Postives = 96/119 (80.67%), Query Frame = 1
Query:    4 FGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQF 360
            FG SADP +SKN  AR++++ V K   K+N+S  +K KF+ + LEM+ ++ KI KHAPQRWLSL   +ERIIRLWHVLRK+Y+++G  FPLD+G+N+D ILQLYSL+QPLSAITRDGQ+
Sbjct:  338 FGTSADPQQSKNKIARDVIKLVIKTAAKINQSTIVKQKFEKVTLEMLDEILKITKHAPQRWLSLVLVMERIIRLWHVLRKVYANDGEEFPLDKGNNRDDILQLYSLLQPLSAITRDGQY 456          
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 6.570e-42
Identity = 72/119 (60.50%), Postives = 94/119 (78.99%), Query Frame = 1
Query:    4 FGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQF 360
            FG   DP KSKNP AR++L++V  +V  LN+S   K+KF+DLQ++++ DV KI   APQRWL+  RTLER+IRLWHVLRKLYSD G  FPL++G NK+ ILQL+SL+Q LS++TRDGQ+
Sbjct:   90 FGTHVDPQKSKNPEARDMLKNVISMVGTLNRSSNFKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSVTRDGQY 208          
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.170e-38
Identity = 71/123 (57.72%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 369
            AFG   DP KSKNP A  +L+++  +V  L+KS  L +KF+DLQ++++ +V KI   APQRWL+L RT+ER+IRLWHVLRKLYSD G  F L++G NKD I QLYSL+Q LS++TRDGQ+ G+
Sbjct:  129 AFGTHPDPQKSKNPEAHNMLKNLIGIVGTLHKSLNLTAKFEDLQVDLLGEVLKIPNQAPQRWLTLVRTMERVIRLWHVLRKLYSDAGKNFILEEGDNKDCIPQLYSLLQSLSSVTRDGQYGGL 251          
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 3.330e-38
Identity = 69/123 (56.10%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 369
            AFG   DP  SKNP AR +L+++  ++  L+KS  L +KF+DLQ++++ +V  I   APQRWL+L RT+ER+IRLW V+RKLYSD G  FPL++G NKD I QLYSL+QPLS++TRDGQ+ G+
Sbjct:  121 AFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGL 242          
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.090e-37
Identity = 69/123 (56.10%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 369
            AFG   DP  SKNP AR +L+++  ++  L+KS  L +KF+DLQ++++ +V  I   APQRWL+L RT+ER+IRLW V+RKLYSD G  FPL++G NKD I QLYSL+QPLS++TRDGQ+ G+
Sbjct:  250 AFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGL 371          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1124.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE2.060e-5171.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KFQ8_9PHAE8.980e-5167.21Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KS21_9PHAE3.790e-4560.98Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L8D8_9PHAE3.260e-4460.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE1.150e-4363.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYQ2_9PHAE7.670e-4361.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEE6_9PHAE6.570e-4260.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB08_9PHAE1.170e-3857.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ66_9PHAE3.330e-3856.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE2.090e-3756.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1124contigA-nodosum_M_contig1124:257660..258030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size371
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.8e-08
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866524.474388-CDS-A-nodosum_M_contig1124:257659..2580281680866524.474388-CDS-A-nodosum_M_contig1124:257659..258028Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1124 257660..258028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1124.25.1prot_A-nodosum_M_contig1124.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1124 257660..258028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1124.25.1

>prot_A-nodosum_M_contig1124.25.1 ID=prot_A-nodosum_M_contig1124.25.1|Name=mRNA_A-nodosum_M_contig1124.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=123bp
AFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHD
VFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDG
ILQLYSLMQPLSAITRDGQFAGV
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mRNA from alignment at A-nodosum_M_contig1124:257660..258030+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1124.25.1 ID=mRNA_A-nodosum_M_contig1124.25.1|Name=mRNA_A-nodosum_M_contig1124.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=371bp|location=Sequence derived from alignment at A-nodosum_M_contig1124:257660..258030+ (Ascophyllum nodosum dioecious)
GCGTTTGGTGTGAGCGCAGACCCTGCCAAGTCCAAAAACCCCGCGGCACG CGAGCTTCTCCGGCATGTCACCAAGGTCGTAGAGAAGCTCAACAAGTCTC CCACCTTGAAAAGCAAGTTCGACGACTTGCAGCTGGAGATGGTGCACGAC GTGTTCAAGATCGTCAAGCACGCTCCCCAACGGTGGCTCAGCCTGACTCG CACGCTGGAGCGGATCATCCGCTTGTGGCACGTGCTGAGGAAGCTTTACT CGGATGAGGGGATGGTGTTTCCCCTCGACCAGGGCAGCAACAAGGACGGC ATCCTCCAGCTCTACTCGTTGATGCAGCCCCTTTCTGCGATCACGCGTGA TGGCCAATTCGCCGGCGTGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1124:257660..258030+

>mRNA_A-nodosum_M_contig1124.25.1 ID=mRNA_A-nodosum_M_contig1124.25.1|Name=mRNA_A-nodosum_M_contig1124.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=369bp|location=Sequence derived from alignment at A-nodosum_M_contig1124:257660..258030+ (Ascophyllum nodosum dioecious)
GCGTTTGGTGTGAGCGCAGACCCTGCCAAGTCCAAAAACCCCGCGGCACG
CGAGCTTCTCCGGCATGTCACCAAGGTCGTAGAGAAGCTCAACAAGTCTC
CCACCTTGAAAAGCAAGTTCGACGACTTGCAGCTGGAGATGGTGCACGAC
GTGTTCAAGATCGTCAAGCACGCTCCCCAACGGTGGCTCAGCCTGACTCG
CACGCTGGAGCGGATCATCCGCTTGTGGCACGTGCTGAGGAAGCTTTACT
CGGATGAGGGGATGGTGTTTCCCCTCGACCAGGGCAGCAACAAGGACGGC
ATCCTCCAGCTCTACTCGTTGATGCAGCCCCTTTCTGCGATCACGCGTGA
TGGCCAATTCGCCGGCGTG
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