mRNA_A-nodosum_M_contig1124.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1124.15.1
Unique NamemRNA_A-nodosum_M_contig1124.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1124.15.1 vs. uniprot
Match: A0A6H5JMW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.900e-6
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   22 LEQGKEVCLPYAALDMRVDKTCPLYWVTWEVDREADAIEIIVPKLPQKASRETIL 186
            L+ G E C P AAL +RVDKTCP+YW  W    +AD    I   +PQ+ +R  IL
Sbjct:   26 LDPGTERCTPEAALYLRVDKTCPIYWTRWNKKSKADLD--ICCDIPQRGTRVKIL 78
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BLAST of mRNA_A-nodosum_M_contig1124.15.1 vs. uniprot
Match: D7FYZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ0_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 5.140e-6
Identity = 27/55 (49.09%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   22 LEQGKEVCLPYAALDMRVDKTCPLYWVTWEVDREADAIEIIVPKLPQKASRETIL 186
            LE G E C P AAL +RVDKTCP+YW  W    +AD    I   +PQ+ +R  IL
Sbjct:  400 LEPGTERCTPEAALYLRVDKTCPIYWTRWNKKSKADLD--ICCDIPQRGTRVKIL 452
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1124.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMW0_9PHAE3.900e-647.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYZ0_ECTSI5.140e-649.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1124contigA-nodosum_M_contig1124:143940..144254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size316
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866523.9294274-CDS-A-nodosum_M_contig1124:143939..1442541680866523.9294274-CDS-A-nodosum_M_contig1124:143939..144254Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1124 143940..144254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1124.15.1prot_A-nodosum_M_contig1124.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1124 143940..144254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1124.15.1

>prot_A-nodosum_M_contig1124.15.1 ID=prot_A-nodosum_M_contig1124.15.1|Name=mRNA_A-nodosum_M_contig1124.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=105bp
ATILTNTLEQGKEVCLPYAALDMRVDKTCPLYWVTWEVDREADAIEIIVP
KLPQKASRETILKILTGSIHGTQHPVVGSRVCQRRRDRGRDAAGNALIVS
PGKTV
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mRNA from alignment at A-nodosum_M_contig1124:143940..144254-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1124.15.1 ID=mRNA_A-nodosum_M_contig1124.15.1|Name=mRNA_A-nodosum_M_contig1124.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at A-nodosum_M_contig1124:143940..144254- (Ascophyllum nodosum dioecious)
GCAACTATTTTAACAAATACGTTAGAACAGGGGAAGGAGGTGTGCCTGCC
ATACGCAGCTCTTGACATGCGTGTCGACAAGACATGCCCCCTATATTGGG
TAACGTGGGAAGTCGATCGCGAGGCCGACGCGATCGAAATTATAGTCCCA
AAGCTACCCCAAAAGGCTAGCCGAGAGACGATTTTGAAGATACTGACAGG
GTCCATCCATGGGACACAACATCCTGTAGTAGGTAGTAGGGTATGTCAGA
GACGTCGAGACAGGGGAAGGGATGCCGCAGGGAATGCGCTAATCGTGTCG
CCCGGCAAAACGGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1124:143940..144254-

>mRNA_A-nodosum_M_contig1124.15.1 ID=mRNA_A-nodosum_M_contig1124.15.1|Name=mRNA_A-nodosum_M_contig1124.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=315bp|location=Sequence derived from alignment at A-nodosum_M_contig1124:143940..144254- (Ascophyllum nodosum dioecious)
GCAACTATTTTAACAAATACGTTAGAACAGGGGAAGGAGGTGTGCCTGCC
ATACGCAGCTCTTGACATGCGTGTCGACAAGACATGCCCCCTATATTGGG
TAACGTGGGAAGTCGATCGCGAGGCCGACGCGATCGAAATTATAGTCCCA
AAGCTACCCCAAAAGGCTAGCCGAGAGACGATTTTGAAGATACTGACAGG
GTCCATCCATGGGACACAACATCCTGTAGTAGGTAGTAGGGTATGTCAGA
GACGTCGAGACAGGGGAAGGGATGCCGCAGGGAATGCGCTAATCGTGTCG
CCCGGCAAAACGGTC
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