mRNA_A-nodosum_M_contig1123.5.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1123.5.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 582 bits (1501), Expect = 4.310e-188 Identity = 320/605 (52.89%), Postives = 390/605 (64.46%), Query Frame = 2
Query: 578 GKITKRRVLITGAVAVCATVAVVLFITLSKSSGGSSLDAFAQASDPNSLGCFVDKRNDRVFPYVFRDATEMTPALCNAQCEDEGYSYYALQWGQECWCGGASVDIDR---HGESDDCDYPCPGDSDMICGGYLTVSVYEVGVEASTPETMTASCRGAAADISIEDDVVYITGGGCATLTDIYNADGTSDLLFVLDTRDRVVSGGTPTGRWLLAADVRIHDGSTLYVHGLSEDGDCDVLRIKSDGSSSYYEVRGHGGNLSFKGTKVTSWDTENGEEQTTYSGGRSFINCVSE--ELAGDDCDGSANNDMGECRMDIIDSVMGNMGFFDGESYGLTWKVRGFCE---DLSNP---EVFERTGVYGDIQGSEIYGMYYGMYSYGHQDGVWINNIMRDNILYGFDPHDDSDDLIIANNEVYGNGNHGIIASKRCXXXXXXXXXXXXXXENAVGIFLHRSSDDAEVYNNYIHDMQGSGLALMESMNADIHDNIIENTIFGIRLSVGSAGSNIYDNSFDSCTDAGVRTYEGSDAPWA--SDGRPSENTFDNNVFSNT--EVGVSIRQGDSNVXXXXXXXXXXVFEIEDSTDTTWSGNTIPSGACLDQDTEF 2347
GK+T++RV+ GA+ A +AV L++ L K + SDPNSLGCF D + RV D MTP +CNA CED GY YYA+QW ECWC + D HG CD+ C GDSD ICGG+ +VYEVG E++TP + +AA + DD+ Y GGGC TLT +Y A L+VLD + VV GGTPTG WLL ++R+ DGSTL VHG + GD DVLR+ S S + EVRG+GGNL F+ T VTSWDT+NG+E+ GRSFINCV++ + A DCDG +N + GECRMDII S MGNMG+FD ESYGLTWKVRG CE D P E+FE VYGDI SEIYGMYYG YSYGHQ GVW +NIMRDNI YGFDPHDDSDDL I+NN VYGNGNHGIIASKRC E+AVGIFLHRSSD AEV++N +++MQ +G+A+MES +A+I+DN N +GIRLS+GS + I +N F T G+ TY GSD P S+GRPS+N FD N +GV I++GDSNV +E EDS+DTTW NT G CLD T+F
Sbjct: 27 GKLTRKRVMAGGALLGAAALAVGLYVGL-KDDSSTDRTLITGQSDPNSLGCFADTSDGRVMEAQLTDQA-MTPDMCNAYCEDLGYYYYAVQWSIECWCAPETTTADELAVHGLGT-CDFACGGDSDQICGGFWAFTVYEVGTESTTPTPSATTSCDSAATVRFTDDIAYFEGGGCGTLTQMYEAQEGDGPLYVLDENNDVV-GGTPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLST-SDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNT--GGGCLDGSTDF 624
BLAST of mRNA_A-nodosum_M_contig1123.5.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 493 bits (1269), Expect = 5.320e-151 Identity = 278/609 (45.65%), Postives = 354/609 (58.13%), Query Frame = 2
Query: 719 SLGCFVDKRNDRVFP--YVFRDATEMTPALCNAQCEDEGYSYYALQWGQECWCGGASVDIDRHGESDDCDYPCPGDSDMICGGYLTVSVYEV-------------------------------------------GVEASTPETMTASCRGAAADISIEDDVVYITGGGCATLTDIYNADGTSD------LLFVLD---TRDRVVSGGTPTGRWLLAADVRIHDGSTLYVHGLSEDGDCDVLRIKSDGSSSYYEVRGHGGNLSFKGTKVTSWDTENGEEQTTYSGGRSFINCVSEELAGDDCDGSANNDMGECRMDIIDSVMGNMGFFDGESYGLTWKVRGFCEDLSNPEVFERTGVYGDIQGSEIYGMYYGMYSYGHQDGVWINNIMRDNILYGFDPHDDSDDLIIANNEVYGNGNHGIIASKRCXXXXXXXXXXXXXXENAVGIFLHRSSDDAEVYNNYIHDMQGSGLALMESMNADIHDNIIENTIFGIRLSVGSAGSNIYDNSFDSCTDAGVRTYEGSDAPWASDGRPSENTFDNNVFSNTEVGVSIRQGDSNVXXXXXXXXXXVFEIEDSTDTTWSGNTIPSGACLDQDTEF--TSDSDAIPAC 2377
S+GCFVD +DRV + + MT A C CE G +Y+ ++ EC+C + D GE+ +CD C GDS CGG+ + VY + G + P A+ G A + Y G GC T+TD+YN GT + +++LD T+ + SG T WLLAA++ I G Y G S GDC+ LRI+S GS ++EVRGHGG+L F+ T VTSWDT N E Q TY GRSF+NCVSE+L GDDC+G+A N+MGECRMDII+S + +G+FD ESYG+TWKVRGFC+DLSNPEVFE T VYGD+ GS+I+ +YYG YSYGHQ GVW NN M DN YGFDPHDDSD L IA NEVY N NHGIIASKRC A GIFLHRSSD A V++N I +MQ +G+A++ES +A I+ NII +GIR+S+GS + +Y NSF + G+ TYEGSD P SDGRPS N N+ + +GV I++GD N FE +ST+T WSGN I G C+++D EF S SD+IP C
Sbjct: 289 SVGCFVDDSSDRVLSGDSMLSINSVMTAAYCADFCE--GSTYFGTEYAFECFCSSSGDSPDELGEASNCDMTCSGDSSETCGGFNAIQVYMLEDGPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMEISSSCGDDEDRPSFRYAASSGVAGRL-------YAEGEGCFTMTDLYNFRGTENDGSSKGPVYMLDDDGTKLDIPSG--ITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVSDGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGNDIGDG-CIEEDDEFDAASGSDSIPIC 885
BLAST of mRNA_A-nodosum_M_contig1123.5.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 457 bits (1176), Expect = 3.330e-138 Identity = 257/456 (56.36%), Postives = 304/456 (66.67%), Query Frame = 2
Query: 1034 GAAADISIEDDVVYITGGGCATLTDIYNADGTSDLLFVLDTRDRVVSGG----TPTGRWLLAADVRIHDGSTLYVHGLSEDGDCDVLRIKSDGSSSYYEVRGHGGNLSFKGTKVTSWDTENGEEQTTYSGGRSFINCVSEELAGD--DCDGSANNDMGECRMDIIDSVMGNMGFFDGESYGLTWKVRGFCEDLSNPEVFERTGVYGDIQGSEIYGMYYGMYSYGHQDGVWINNIMRDNILYGFDPHDDSDDLIIANNEVYGNGNHGIIASKRCXXXXXXXXXXXXXXENAVGIFLHRSSDDAEVYNNYIHDMQGSGLALMESMNADIHDNIIENTIFGIRLSVGSAGSNIYDNSFDSCTDAGVRTYEGSDAPWAS--DGRPSENTFDNNVFSNTEVGVSIRQGDSNVXXXXXXXXXXVFEIEDSTDTTWSGNTIPSGACLDQDTEFTSDSDAIPAC 2377
G A IS D +GGGCATLTD+YN S L+VLD+ + +VSGG +PTG WLL + + I DG TLYVHG S GD DVLRI+S ++E+RG GG+LSF T VTSWDT+ GEE+T Y GGRSFINCV++ D C G +N + GECRMDIIDS MGNMG+FD ESYGLTWKVRG C DLSN E+ + VYGDI+GSEIYGMYYGMYSYGHQ GVW +N+MRDNILYGFDPHDDSDDL IA N VYGNGNHGIIASKRC XXXXXXXX ALMES A+I+DN IEN +GIRLS+GSA ++I+DN+FDS + G+ TY+GSD P S DGR +N+FD N SNT+V + I++GD N FE EDSTDT W+ N I G CLD+ T+F S S IP+C
Sbjct: 396 GTIASISTSSDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSYGHQGGVWTDNVMRDNILYGFDPHDDSDDLTIAGNTVYGNGNHGIIASKRCNNVEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXALMESFRAEIYDNTIENCKYGIRLSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGNDGRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNVFENVKTFEFEDSTDTVWTNNDI-GGGCLDESTDFASGS--IPSC 845
BLAST of mRNA_A-nodosum_M_contig1123.5.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 440 bits (1131), Expect = 8.380e-137 Identity = 232/444 (52.25%), Postives = 293/444 (65.99%), Query Frame = 2
Query: 1088 GCATLTDIYNADGTSD------LLFVLD-TRDRVVSGGTPTGRWLLAADVRIHDGSTLYVHGLSEDGDCDVLRIKSDGSSSYYEVRGHGGNLSFKGTKVTSWDTENGEEQTTYSGGRSFINCVSEELAGDDCDGSANNDMGECRMDIIDSVMGNMGFFDGESYGLTWKVR---------GFCEDLSNPEVFERTGVYGDIQGSEIYGMYYGMYSYGHQDGVWINNIMRDNILYGFDPHDDSDDLIIANNEVYGNGNHGIIASKRCXXXXXXXXXXXXXXENAVGIFLHRSSDDAEVYNNYIHDMQGSGLALMESMNADIHDNIIENTIFGIRLSVGSAGSNIYDNSFDSCTDAGVRTYEGSDAPWASDGRPSENTFDNNVFSNTEVGVSIRQGDSNVXXXXXXXXXXVFEIEDSTDTTWSGNTIPSGACLDQDTEFTSDSDAIP 2371
GC TLTD+YN GT + L++LD + ++ + + T +WLL A++ + +G+ Y G E GDCD LRI+S G +YEVRGHGG++ F T VTSWDT N + Q TY GGRSF+NCVSE+L G+ CDG A NDMGECRMDII+S MG MGFFD ESYGLTWKVR GFC+DLSNP+VFE T VYGDI+ S+I+ MYYG YSYGHQ GVW NN M DN Y +ANN+VY N NHGIIASKRC +AVGIFLHRSSD+AEVY N I +M +G+AL+ES NADIHDN I+ FGIR+S+GS G+++YDN F+ C+D G+ TY GSD P S+GRP+ NTF+NN +N+ GV + D+ V E D+ TTWSGN++PSG C+D T + D +++P
Sbjct: 21 GCFTLTDLYNFRGTENDGSSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSNGRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGNSLPSGVCIDNIT--SDDGNSVP 450
BLAST of mRNA_A-nodosum_M_contig1123.5.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 427 bits (1099), Expect = 1.710e-132 Identity = 221/436 (50.69%), Postives = 283/436 (64.91%), Query Frame = 2
Query: 1082 GGGCATLTDIY------NADGTSDLLFVLDTRDRV-VSGGTPTGRWLLAADVRIHDGSTLYVHGLSEDGDCDVLRIKSDGSSSYYEVRGHGGNLSFKGTKVTSWDTENGEEQTTYSGGRSFINCVSEELAGDDCDGSANNDMGECRMDIIDSVMGNMGFFDGESYGLTWKVRGFCEDLSNPEVFERTGVYGDIQGSEIYGMYYGMYSYGHQDGVWINNIMRDNILYGFDPHDDSDDLIIANNEVYGNGNHGIIASKRCXXXXXXXXXXXXXXENAVGIFLHRSSDDAEVYNNYIHDMQGSGLALMESMNADIHDNIIENTIFGIRLSVGSAGSNIYDNSFDSCTDAGVRTYEGSDAPWASDGRPSENTFDNNVFSNTEVGVSIRQGDSNVXXXXXXXXXXVFEIEDSTDTTWSGNTIPSGACL---DQDTEFTSDS 2359
GGGC TL+D+Y N + +FVLD+ DRV + T TG+WLL AD+ + G+TLY G G+C LRI+S S ++E+RGHGGNL F+ T VTSWD + + Q TY GRSFI CVSE L G+D A N+MGECRMDIIDS MG +G+ E+YG+TWKVRGFC DLSNP+VF+ VYGD++GS+I+ MYYGMYS+GHQ GVW NN+M DN YGFDPHDDSD LIIA N+VY N NHGIIASKRC +A GIFLHRS DD+EVY N I +M +G+A++E+ DIHDN ++ FGIR+ +GS+ + ++DN F + + G+ TY GSD PW GRP +N F NN TE GV I++ D+ E ++ D WSGN+IP+ CL D ++ FT S
Sbjct: 8 GGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDT--CAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGGGRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGNSIPTNTCLEDIDNNSTFTGSS 441
BLAST of mRNA_A-nodosum_M_contig1123.5.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 437 bits (1123), Expect = 1.070e-130 Identity = 239/446 (53.59%), Postives = 288/446 (64.57%), Query Frame = 2
Query: 1073 YITGGGCATLTDIYNADGTSD---LLFVLDTRDRVVSGGTPTGRWLLAADVRIHDGSTLYVHGLSEDGDCDVLRIKSDGSSSYYEVRGHGGNLSFKGTKVTSWDTENGEEQTTYSGGRSFINCVSEELAG--DDCDGSANNDMGECRMDIIDSVMGNMGFFDGESYGLTWKVRGFCEDLSNPEVFERTGVYGDIQGSEIYGMYYGMYSYGHQDGVWINNIMRDNILYGFDPHDDSDDLIIANNEVYGNGNHGIIASKRCXXXXXXXXXXXXXXENAVGIFLHRSSDDAEVYNNYIHDMQGSGLALMESMNADIHDNIIENTIFGIRLSVGSAGSNIYDNSFDSCTDAGVRTYEGSDAPWAS---DGRPSENTFDNNVFSNTEVGVSIRQGDSNVXXXXXXXXXXV---FEIEDSTDTTWSGNTIPSGACL--DQDTEFTSDSDAIP 2371
YI GGGCATLTDIY A G + LFVLD+ D VV GG+PTG WLL D+ + +GS L VHG GD VLRI+S GS YYE+RGHGG+LSF TKVTSWDT+ + T Y RSFI CVSEELA D CDG A N MGECRMDII S MG MG+ ESYG++WKVRG+C + NPEVFERT V GDI S+IYGMYYG YS+GH G+W N M DN YGFDPHDDSD+L IA N V+GNGNHGIIASKRC E AVGIFLHRSSDD EV+ N ++DM+ +G+A+MESM A IHDN N +GIRLSVG+A + + +NSF C G+ TY+G+D P AS DG +NTF N E GV I++ + V + ED D W+ N +P CL D++ ++ D++P
Sbjct: 401 YIRGGGCATLTDIYTAQGGHNDDGPLFVLDSNDNVV-GGSPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPDDICLKGDKNIDYMKSYDSLP 842
BLAST of mRNA_A-nodosum_M_contig1123.5.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI) HSP 1 Score: 421 bits (1081), Expect = 9.010e-127 Identity = 262/585 (44.79%), Postives = 341/585 (58.29%), Query Frame = 2
Query: 725 GCFVDKRN-DRVFPYVFRDATEMTPALCNAQCEDEGYSYYALQWGQECWCG--GASVDIDRHGESD-DCDYPCPGDSDMICG----------GYLTVSVYEVGVEASTPETMTASCRGAA---------------ADISIEDDVVYITGGGCATLTDIYNADGTSDLLFVLDTRDRVVSGG----TPTGRWLLAADVRIHDGSTLYVHGLSEDGDCDVLRIKSDGSSSYYEVRGHGGNLSFKGTKVTSWDTENGEEQTTYSG-GRSFINCVSEELAGDDCDGSANNDMGECRMDIIDSVMGNMGFFDGESYGLTWKVRGFCEDLSNPEVFERTGVYGDIQGSEIYGMYYGMYSYGHQDGVWINNIMRDNILYGFDPHDDSDDLIIANNEVYGNGNHGIIASKRCXXXXXXXXXXXXXXENAVGIFLHRSSDDAEVYNNYIHDMQGSGLALMESMNADIHDNIIENTIFGIRLSVGSAGSNIYDNSFDSCTDAGVRTYEGSDAPWASDGRPSENTFDNNVFSNTEVGVSIRQGDSNVXXXXXXXXXXVFEIEDSTDTTWSGNTIPSGACLDQDTEFTSDSDAIPAC 2377
GCF DK DR+F YV +MT LC +C+ GY+++ LQWG+E CG G + R G +D DC +S +C G + V + TP+T +A A + I+ D Y GGCATLTD+YNA + L+VLD+ D V G PTGRWLL ++++I D +TL+V G GDCDVLRI+S GS Y+E+ GHGGN+ F+GTKVTSWDT G+E+ GRSFI C+++ C G +N DMG CRMDIIDS MGNMG+ ESYGLTWKVRG C++LSN ++F++ VYGDI+ S+IYGMYYGMYSYGH+ GVW NN M DN+ YGFDPHDDSD+L+IA+N XXXXXXXXXXXXXX A +ES +ADI+DN I N +GIRLS+GS ++I +N+FD+ + G+ TY+GSD+P S+GRP N F+ N SNT++GV ++GD N+ FE E S DT W+GN++ G CLD+ +FT SD IP C
Sbjct: 102 GCFNDKPEPDRLFSYV-TTMDDMTTELCANECK--GYAFFGLQWGREAGCGTCGGTGCSQRPGLTDSDCCIGKIEESGPLCSVTGKAPCFVDGDSSAPEQTSPVPSPTPKTXXXXXXRSATPTPPTPVPSGCDTKATVQIDKDTAYFKSGGCATLTDLYNAQDGTGPLWVLDSNDNKVDGAGGSAKPTGRWLLTSNIKIEDDATLFVEGKDRGGDCDVLRIESTGSK-YWEIFGHGGNMYFEGTKVTSWDTSKGKEREYKKNEGRSFIRCITQYDDNYSCSGGSNKDMGTCRMDIIDSTMGNMGYDASESYGLTWKVRGLCKNLSNLKLFDKRNVYGDIKNSDIYGMYYGMYSYGHEGGVWTNNKMHDNVQYGFDPHDDSDNLVIAHNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXAFLESFDADIYDNRIVNCKYGIRLSLGSGDNDITNNTFDNISKYGLYTYKGSDSPDVSNGRPKGNKFEGNTVSNTKIGVLGKEGDDNIFKNNVFTNVDTFEFEKSKDTEWTGNSL-GGGCLDRGKDFTKGSDTIPDC 679
BLAST of mRNA_A-nodosum_M_contig1123.5.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 405 bits (1042), Expect = 2.550e-123 Identity = 216/437 (49.43%), Postives = 283/437 (64.76%), Query Frame = 2
Query: 1055 IEDDVVYIT----GGGCATLTDIYN----ADGTSD--LLFVLDTRDRVVSGGTPTGRWLLAADVRIHDGSTLYVHGLSEDGDCDVLRIKSDGSSSYYEVRGHGGNLSFKGTKVTSWDTENGEEQTTYSGGRSFINCVSEELAGDDCDGSANNDMGECRMDIIDSVMGNMGFFDGESYGLTWKVRGFCEDLSNPEVFERTGVYGDIQGSEIYGMYYGMYSYGHQDGVWINNIMRDNILYGFDPHDDSDDLIIANNEVYGNGNHGIIASKRCXXXXXXXXXXXXXXENAVGIFLHRSSDDAEVYNNYIHDMQGSGLALMESMNADIHDNIIENTIFGIRLSVGSAGSNIYDNSFDSCTDAGVRTYEGSDAPW--ASDGRPSENTFDNNVFSNTEVGVSIRQGDSNVXXXXXXXXXXVFEIEDSTDTTWSGNTIPSGACL 2329
I DDV T G GC T+TD+YN +DG++ + + D+ + V++ + +WLL A++ I G+ Y G S GDCD LRI+S G + ++EVR HGG++ F+ T VTSWDT N Q TY GGRSF+NCVSE+L G+ C G A N+MGECRMDII+S +G +G+FD ESYGLTWKVRGFC+DLSNP+VF+ T VYG++ GS+I+ YYG YSYGHQ GVW NN M DN YGFDPHDDSD L IIASKRC A GIFLHRSSD A V++N +HDMQ +G+A++ESMNADI++N + FGIRLS+GS+ +++++N F+ + G+ TY+GSD P SDGRPS+N F+NN N GV I++GD V E D+ +T W GNT+P G C+
Sbjct: 71 IMDDVTGNTPDAEGEGCFTITDLYNFRLESDGSAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNTLPQGVCI 495
BLAST of mRNA_A-nodosum_M_contig1123.5.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 345 bits (884), Expect = 2.190e-103 Identity = 190/407 (46.68%), Postives = 229/407 (56.27%), Query Frame = 2
Query: 1151 DTRDRVVSGGTPTGRWLLAADVRIHDGSTLYVHGLSEDGDCDVLRIKSDGSSSYYEVRGHGGNLSFKGTKVTSWDTENGEEQTTYSGGRSFINCVSEELAGDDCDGSANNDMGECRMDIIDSVMGNMGFFDGESYGLTWKVRGFCEDLSNPEVFERTGVYGDIQGSEIYGMYYGMYSYGHQDGVWINNIMRDNILYGFDPHDDSDDLIIANNEVYGNGNHGIIASKRCXXXXXXXXXXXXXXENAVGIFLHRSSDDAEVYNNYIHDMQGSGLALMESMNADIHDNIIENTIFGIRLSVGSAGSNIYDNSFDSCTDAGVRTYEGSDAPWASDGRPSENTFDNNVFSNTEVGVSIRQGDSNVXXXXXXXXXXVFEIEDSTDTTWSGNTIPSGACLDQDTEFTSDSDAIP 2371
D+ +++ S + T +WLL +++ + DG+ Y G E GDCD LRI+S G +YEVRGHGG++ F T VTSWDT N + Q TY GGRSF+NCVSE+L G+ CDG A ND GECRMDII+S MG MGFFD ESYGLTWKVRGFC+DLSNP+VFE T VYGDI+ S I+ MYYGMYSYGHQ GVW NN M DN YGFDPHDDSD L IA ASKRC AVGIFLHRSSD+AEVY G DAP S+GRP+ NTF+NN +NT GV I+ D+ V E D+ TTWS N++PSG C+D T + D +++P
Sbjct: 4 DSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVY-------------------------------------------------------GGXXXXXXXDAPDVSNGRPNGNTFNNNKITNTAGGVKIKNSDNIVISNNDFTGTEELEFFDAQATTWSDNSLPSGVCIDNVT--SDDGNSVP 353
BLAST of mRNA_A-nodosum_M_contig1123.5.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI) HSP 1 Score: 358 bits (919), Expect = 8.410e-102 Identity = 209/446 (46.86%), Postives = 255/446 (57.17%), Query Frame = 2
Query: 1073 YITGGGCATLTDIYNADGTSD---LLFVLDTRDRVVSGGTPTGRWLLAADVRIHDGSTLYVHGLSEDGDCDVLRIKSDGSSSYYEVRGHGGNLSFKGTKVTSWDTENGEEQTTYSGGRSFINCVSEELAG--DDCDGSANNDMGECRMDIIDSVMGNMGFFDGESYGLTWKVRGFCEDLSNPEVFERTGVYGDIQGSEIYGMYYGMYSYGHQDGVWINNIMRDNILYGFDPHDDSDDLIIANNEVYGNGNHGIIASKRCXXXXXXXXXXXXXXENAVGIFLHRSSDDAEVYNNYIHDMQGSGLALMESMNADIHDNIIENTIFGIRLSVGSAGSNIYDNSFDSCTDAGVRTYEGSDAPWAS---DGRPSENTFDNNVFSNTEVGVSIRQGDSNVXXXXXXXXXXV---FEIEDSTDTTWSGNTIPSGACL--DQDTEFTSDSDAIP 2371
YI GGGCATLTDIY A G + LFVLD+ D VV GG+PTG WLL D+ + + S L VHG GD VLRI+S S+ YYE+RGHGG+LSF TKVTSWDT+ E T Y+ RSF+ CVSEELA D CDG A N MGECRM V GDI S IYGMYYG YS+GH G+W N M DN YGFDPHDDSD+L IA N V+GNGNHGIIASKRC E AVGIFLHRSSDD EV+ N ++DM+ +G+A+MESM A I+DN N +GIRLSVG++ + + +N F C G+ TY+G+D P AS DG +NTF N E GV I++ + + ED D W+ N +P G CL D +T++ D++P
Sbjct: 503 YIRGGGCATLTDIYTAQGGHNDDGPLFVLDSNDNVV-GGSPTGYWLLMRDIHVEEDSLLQVHGPDAGGDARVLRIQSTASNDYYEIRGHGGSLSFMDTKVTSWDTDEKEVNTNYNKERSFVRCVSEELADNPDTCDGHAVNHMGECRM-----------------------------------------VRGDIIDSNIYGMYYGHYSFGHDGGIWTGNQMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWENTVYDMEDAGMAIMESMGAHIYDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIAFTDNKFYEHSSGEEYRFEDCEDVVWTNNLVPDGICLKGDDNTDYFKSYDSLP 903 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1123.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1123.5.1 >prot_A-nodosum_M_contig1123.5.1 ID=prot_A-nodosum_M_contig1123.5.1|Name=mRNA_A-nodosum_M_contig1123.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=637bp MVSTVDSVERAAVPTPASAPAPAQATSIWSEDYRPRGKITKRRVLITGAVback to top mRNA from alignment at A-nodosum_M_contig1123:155860..171774+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1123.5.1 ID=mRNA_A-nodosum_M_contig1123.5.1|Name=mRNA_A-nodosum_M_contig1123.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=15915bp|location=Sequence derived from alignment at A-nodosum_M_contig1123:155860..171774+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1123:155860..171774+ >mRNA_A-nodosum_M_contig1123.5.1 ID=mRNA_A-nodosum_M_contig1123.5.1|Name=mRNA_A-nodosum_M_contig1123.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1911bp|location=Sequence derived from alignment at A-nodosum_M_contig1123:155860..171774+ (Ascophyllum nodosum dioecious)back to top |