mRNA_A-nodosum_M_contig1122.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1122.4.1
Unique NamemRNA_A-nodosum_M_contig1122.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.4.1 vs. uniprot
Match: D8LCW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW9_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 6.590e-17
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 2 
Query:   86 DVVGFVAGLLVSIALVPQIYRAHKRKSAKDLSYSWQVTLAVGVVFQLLYLYHYDLWSAFVPLVGELVLILYLTGLKLYFHD--GDNAPGEGKISTLYTN 376
            +++GFV G++++ AL+PQIY AH RKS  D+SY WQ    VG++  ++Y +H+ LW+ F P+  E   ++YLTGLK+Y+    G+ AP E   S L  N
Sbjct:    9 NIIGFVGGVVLATALLPQIYLAHSRKSTADISYLWQAVYTVGLLTLMIYYFHFRLWAVFYPMAFEFSSLMYLTGLKIYYEVCLGNVAPPEELPSLLEAN 107
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.4.1 vs. uniprot
Match: G5AIC2_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AIC2_PHYSP)

HSP 1 Score: 64.7 bits (156), Expect = 4.980e-9
Identity = 31/78 (39.74%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:   89 VVGFVAGLLVSIALVPQIYRAHKRKSAKDLSYSWQVTLAVGVVFQLLYLYHYDLWSAFVPLVGELVLILYLTGLKLYF 322
            +VGF+  LL++ +LVPQ+ + +K KSAKD+SYS+Q++  VG+   + Y +   LW  ++P   EL   L +  +KLY+
Sbjct:    7 IVGFLGSLLLAASLVPQMMKLYKTKSAKDISYSYQISYVVGLAMIVAYGFGRWLWPVYIPATIELSAALVVFSMKLYY 84
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.4.1 vs. uniprot
Match: A0A7S1Y593_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y593_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.110e-8
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 2 
Query:   62 VDYVDILVDVVGFVAGLLVSIALVPQIYRAHKRKSAKDLSYSWQVTLAVGVVFQLLYLYHYDLWSAFVPLVGELVLILYLTGLKLYFHDGDNAPGEGKISTLYTNG 379
            VDY++I+    G+V G+++++ALVPQ+ ++ K KS  D+SYSWQV   VG+     Y    D  +A+V L+ E+V    L  LKL F DG +    G  ++   +G
Sbjct:    9 VDYIEII----GYVGGVVLAVALVPQVIKSWKEKSTADISYSWQVIYIVGLWLNFAYFILVDAVAAWVTLLFEIVCAHLLVLLKLRF-DGCSTRSRGHKNSTDMDG 109
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.4.1 vs. uniprot
Match: D7G1V4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V4_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 8.820e-8
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 2 
Query:   74 DILVDVVGFVAGLLVSIALVPQIYRAHKRKSAKDLSYSWQVTLAVGVVF 220
            D +VD +GF AG LV+ +L+PQI+RAHKR+SA DLS++WQV      V+
Sbjct:    5 DTIVDAIGFSAGFLVASSLLPQIWRAHKRRSAADLSFTWQVRSTCTFVY 53
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.4.1 vs. uniprot
Match: A0A6C0EJF3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0EJF3_9ZZZZ)

HSP 1 Score: 59.3 bits (142), Expect = 3.090e-7
Identity = 28/76 (36.84%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:   92 VGFVAGLLVSIALVPQIYRAHKRKSAKDLSYSWQVTLAVGVVFQLLYLYHYDLWSAFVPLVGELVLILYLTGLKLY 319
            +G+ +G ++SI L+PQIY+  K  SA D+SY WQ    +G+   ++Y Y+ ++    +P V E+ L   L  LK+Y
Sbjct:   12 IGYSSGFILSICLIPQIYKVIKNWSASDISYIWQCLYFMGLSLNIIYCYYENIIPILIPAVLEITLCTVLIILKVY 87
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.4.1 vs. uniprot
Match: A0A8K1C8K9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8K9_PYTOL)

HSP 1 Score: 58.5 bits (140), Expect = 6.180e-7
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 2 
Query:   86 DVVGFVAGLLVSIALVPQIYRAHKRKSAKDLSYSWQVTLAVGVVFQLLYLYHYDLWSAFVPLVGELVLILYLTGLKLYF 322
            D++G V   L+S ALVPQI + ++ KSA D+SYS+      G+   ++Y     LW  ++P   EL+  + L G+K +F
Sbjct:    8 DILGLVGSFLISAALVPQIQKVYRTKSANDISYSFMCLYVTGLTMIVIYGIGEALWPIYIPCALELLGAISLLGMKCHF 86
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.4.1 vs. uniprot
Match: A0A1F5TM34_9BACT (Uncharacterized protein n=1 Tax=Candidatus Falkowbacteria bacterium RIFOXYD2_FULL_34_120 TaxID=1798007 RepID=A0A1F5TM34_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 2.270e-6
Identity = 26/80 (32.50%), Postives = 52/80 (65.00%), Query Frame = 2 
Query:   83 VDVVGFVAGLLVSIALVPQIYRAHKRKSAKDLSYSWQVTLAVGVVFQLLYLYHYDLWSAFVPLVGELVLILYLTGLKLYF 322
            V+++GFVAG LV+I+++PQ+ ++ K +S KD++ +W V    G +  ++Y ++ + +S  V     L++ +++  LKL F
Sbjct:    4 VEIIGFVAGTLVAISVLPQVIKSWKTRSTKDVALAWSVINLTGQILWVIYGFYINSYSLVVMSSITLIMNIFMVSLKLKF 83
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.4.1 vs. uniprot
Match: A0A3R7HBR8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HBR8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.400e-6
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 2 
Query:   74 DILVDVVGFVAGLLVSIALVPQIYRAHKRKSAKDLSYSWQVTLAVGVVFQLLYLYHYDLWSAFVPLVGELVLILYLTGLKLYF 322
            + L D +G V   LVS ALVPQI + ++ KSAKD+S  +Q   AVGV+   +Y     LW  ++P   EL+  + L  +K Y+
Sbjct:    5 ETLYDTLGLVGSFLVSAALVPQILKVYRSKSAKDISSVFQFVFAVGVLCITIYGLGEGLWPIWIPSTLELLAGIILLVMKHYY 87
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.4.1 vs. uniprot
Match: A0A662Y6Z4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6Z4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.460e-6
Identity = 29/96 (30.21%), Postives = 56/96 (58.33%), Query Frame = 2 
Query:   35 PDPRAQVAMVDYVDILVDVVGFVAGLLVSIALVPQIYRAHKRKSAKDLSYSWQVTLAVGVVFQLLYLYHYDLWSAFVPLVGELVLILYLTGLKLYF 322
            P+P   V +  +   ++ + G +   +++ ALVPQ+Y+ +K KSAKD+S ++Q    +GV   L+Y +   LW  ++P   E +  + + G+KL++
Sbjct:   83 PEPTIPVPLASFXXGVLTI-GMLGSFVIASALVPQMYKVYKTKSAKDISMAFQCLYILGVAMILVYGFGESLWPIYIPASIEELAAVVMLGMKLFY 177
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.4.1 vs. uniprot
Match: A0A6N7AGS4_9PROT (Cystinosin/ERS1p repeat protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N7AGS4_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 6.770e-6
Identity = 27/82 (32.93%), Postives = 50/82 (60.98%), Query Frame = 2 
Query:   77 ILVDVVGFVAGLLVSIALVPQIYRAHKRKSAKDLSYSWQVTLAVGVVFQLLYLYHYDLWSAFVPLVGELVLILYLTGLKLYF 322
            +L+D +G++AGLL ++A +PQ+ +  + +SA+DLS +  +   +GV+  LLY    + W    P++   ++   LTG  L+F
Sbjct:    5 VLIDAIGYIAGLLTTVAFLPQVIKTWRSRSARDLSLAMLLIFTIGVLCWLLYGIAINRW----PIILPNIVTFLLTGTILFF 82
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1122.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LCW9_ECTSI6.590e-1743.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G5AIC2_PHYSP4.980e-939.74Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A7S1Y593_9STRA5.110e-837.74Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
D7G1V4_ECTSI8.820e-855.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6C0EJF3_9ZZZZ3.090e-736.84Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A8K1C8K9_PYTOL6.180e-736.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1F5TM34_9BACT2.270e-632.50Uncharacterized protein n=1 Tax=Candidatus Falkowb... [more]
A0A3R7HBR8_9STRA2.400e-639.76Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A662Y6Z4_9STRA5.460e-630.21Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6N7AGS4_9PROT6.770e-632.93Cystinosin/ERS1p repeat protein n=1 Tax=Rhodospiri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1122contigA-nodosum_M_contig1122:45481..52981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1V2
PFAMsPQ-loop
Model size1543
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.95e-15
EggNOG OGs2CZ06@1|root,2S7J2@2759|Eukaryota
Ec32 ortholog descriptionPQ-loop repeat
Ec32 orthologEc-07_003990.1
DescriptionPQ loop repeat
Cds size468
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866521.816155-UTR-A-nodosum_M_contig1122:45480..464971680866521.816155-UTR-A-nodosum_M_contig1122:45480..46497Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1122 45481..46497 -
1680866521.9181275-UTR-A-nodosum_M_contig1122:52923..529811680866521.9181275-UTR-A-nodosum_M_contig1122:52923..52981Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1122 52924..52981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866521.885001-CDS-A-nodosum_M_contig1122:46497..465151680866521.885001-CDS-A-nodosum_M_contig1122:46497..46515Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 46498..46515 -
1680866521.894894-CDS-A-nodosum_M_contig1122:47987..483021680866521.894894-CDS-A-nodosum_M_contig1122:47987..48302Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 47988..48302 -
1680866521.903951-CDS-A-nodosum_M_contig1122:52788..529231680866521.903951-CDS-A-nodosum_M_contig1122:52788..52923Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 52789..52923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1122.4.1prot_A-nodosum_M_contig1122.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1122 46498..52923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1122.4.1

>prot_A-nodosum_M_contig1122.4.1 ID=prot_A-nodosum_M_contig1122.4.1|Name=mRNA_A-nodosum_M_contig1122.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=156bp
MVDYVDILVDVVGFVAGLLVSIALVPQIYRAHKRKSAKDLSYSWQVTLAV
GVVFQLLYLYHYDLWSAFVPLVGELVLILYLTGLKLYFHDGDNAPGEGKI
STLYTNGVTNGAVDDKGAAEEGEIKYQGVRDQRRSSRNGGGVVGESGAGQ
GSAVV*
back to top

mRNA from alignment at A-nodosum_M_contig1122:45481..52981-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1122.4.1 ID=mRNA_A-nodosum_M_contig1122.4.1|Name=mRNA_A-nodosum_M_contig1122.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7501bp|location=Sequence derived from alignment at A-nodosum_M_contig1122:45481..52981- (Ascophyllum nodosum dioecious)
GCGTGCCCAGATACAACAAAGGGAACAATCGCGGCCTGATCCCAGAGCGC
AGGTCGCGATGGTGGATTACGTCGACATACTTGTTGATGTTGTGGGCTTC
GTCGCCGGTTTGCTAGTTTCGATCGCTCTGGTGCCGCAGATCTATCGAGC
GCACAAGAGAAAGAGTGCGAAGGACTTGAGCTACTCCTGGCAGGTGCGAC
CCGAGAGAAGTTAGTTTGCTGCGAGCGTCGACTGCGTGCTTTCCTTTGAT
TCGGCGCGTAACAGCTCTCTGACTCTTCAAATAGCCACAGCATGAGACTG
ACTCATGAATAATCATCTGTTGTTCTGTTGTGCAACTGACGGGCTCAAAA
CAACAGTCAGAATACCTACTTATATACGTGATACGACGTTGACGATTTCT
GTACAAATCATGTGAAAACAATCGATCTCCGATGCTGTCTGTCTCTGTAC
AAATGAACACAACCCATCTTCTATATTTTCTCTATACAGTACAAATGAAT
ATAACCCATCCCCGATAATTTCTCTATACAAATGAAAACAATCCGTCTCT
GATATAAATAAATGGACGCCGCCGCGGAACTCGAGAGAAATCCCGTAAGT
AAGCACCATATTCAGCCTGGAGTACGGAGATGAGCAGGCTGACGCGGCAC
GGGGCTGCCGAATCCGTCTCGCGAGACCAATTTCTCAGGCGCGAACGTGG
AGAGGGAAATATTCCTTTTCCCTGTTTAGCTGACCACAAGCAGGATTGGC
AACCTTACTCAGTTGATCCACACTCTTGCTATATGTGTGACCATACAAGA
AAGAGAGGCGAATATTAATTGTTCCATGGTGATCTGCCAAGGCAGCACCC
GTTCGGAACTACCTTGAGGTTTACTGGCCATGTGCCGGCGGACTCTCGGC
AGTGAACGCCATCGGTACGCAATTGCGTGACCCGATAAACTCGGGACTGA
CCCGATGGCGTATGGCGGTTTCATAATGGACGCCGCCGCGGAACTCGGGA
GGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAG
GCTGACGCGGGACGGGACGGCTGAACCCATCTCGCGAGACCAAATTCTCA
GGCACGCACGGGGACAGGGGAATATTCATTTTCCTTGTTCAGCTGACCAC
GAGCAGGATTGGCAACCTTACCCGGTTGATCCATACTCTACTATATGTGA
TGACCATACATATATTTGATCCCCCCTCGGGAGGATCAATGCGAGTGGCA
TAGAATGACTAGGATGACAGGGCCGGATTGCGTGGTTATGTGCAACGCCA
TCATACAACGCCATCGGTACGCAATTGCGTCACCCGATAAACTCGGGACT
GACCCGATGGCGTATGGCGGTTTCATAAATGGACGCCGCCGCGGAACTCG
GGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAG
CAGACTGACGCGGAACGGGACGGCTGAACCCGTCTCGCGAGACCAAATTC
TCAGGCACCCACGGGGACAGGGGAATATTCATTTTCCCTGTTCAGCTGAC
CACGAGCAGGATTGGCAATCTTACCCGGTTGATCCATACTCTGCTATATG
TGATGACCATACATACATGCCAGTACATACATACAAACATACATATTGGA
GTTTCTGTACAAGTATGAAACATGTCCGCTACATACCATTAGTCGGTGTG
GTAAAAGAGAGGCGCCCGTTAATCATTGATTAGTCCACGGTGATACCTGA
AAAGGCAGCACACTCGTGACTAGAATTGCAAGTGTTTTTGGCTACGGGAC
AGATCAGAATAGACATAGCGCGGGCAAATCAGAAGCCGTTGTTGACATAG
CGAGGACCAATCACAGGTTGTTTTAGACATTAGCCATCAAACTTATTACG
CTCGATGTAATATGAGTGCAGCTTGTTTTAGACATAGCCACCAAACTTTA
CACGCTCGATGTAATACTGAGTTACAGTAAAGCTCGAATACGTGAGGAAA
AAACTAGTACCGAGCATACAAGCAAAACAGCTCGACTTCGACTGAGATTA
TACTGCGTCCGCCTGTGTATTGCGACGCCCCTTTGAACATAAACGGTAGT
GGTACGCTCATCTTGAGCTGTTTCTCCGCTCTCGTACAGGATCTACTCTA
GTCTACGTGTTAGGGAATATGCACCACCGTTGTATTATAGGAAAGTTCCG
CCATTTAGGCCCTGGCAAGGAGCACAAATATTCTCATGTGTTCGCCGCTA
GAATTTCTGTGCATTCTCGAAGAGAGGTCGGAAATTCTCCTGCCGCAAGT
GGGATGGCTAGTGAAACGATAGCGACCTACATGGCACTCAGGGCTGGCAT
GATCGAGCAGCATAAGCATTCGACTTCTTCGAAGTCATACTCAGCATGTT
CAAAACTACTAATATTAATACAAAAGTAGAACAGAGTATGATATCATCAT
AGTCTCACAAAAATGTGTCACAAGAGTAGACTATTATATTTTTGTCTCAA
TAAAAATGTGGATGAAGTAATAGGTTTACACCGCTCTTTGTGAAAACCTC
AATCACTTGAAACAGCAGCCTATTACACGTAACACGAAAAGAACCAAAAG
AACCAACACCCGAACCCCGCGCAGCGGGAGTGAGTGCCTGTGGATGATGC
TATCAGTATCACAGCTGATCACCTGCAAAACACTGCACTGCTCAATCAGC
AACCCTCAGAACCCTCCGGTTTCCATAACGGAGTTCGAAAAGATTTCGCA
TGTTTCGTCCGCGTAATTAAACTCCCAAAACCCTGCCCCGGATCCCGGAG
CCTAAAAAAATTGCCTTTTTCTACCTTGTGACCACGGGCTGGATTTTTGA
CATCGTTTATTTTGTGAGAATTCAATCAATCAATCAATCAATCATAAATG
ACAGCACGCTTCATACCAATAGTGGGTGTGGGAAAAGAGAGGCGCATATT
CATTGGTCCATGGTGATCTGCCAAGGCAGCACTCGCTCGGAACTACCTTG
GGGTTTGCTGGCCCTTCGCCGGCGGACTTTTGGCAGTGAACGCCATCGGT
ACGCAATTGCGTGACCCGATAAACTCGGGACTGACCCGATGGTGCATGGC
GGTTTAAATAAATAAATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGT
AAGTAAGTACCAGATTCAGCCTGAGTATGGAGATGAGGAGGCTGACGCGG
GACGGGACTGCCGAACCCGTCTCGCGAGACCAAGTTATCAGGCGCAAACG
TGGACAGGGAAATATTTATTTTCCCTGTTCAGCTGACCACGTGCAGGATT
GGCAACCTTACCCGGTTGATCCATGCTCTTGCTATATGTGTAACCATACA
TACATACATATAAATGATCATATTTATATACGTATGTACATAAGTAACAT
TGATCCCCTTGGTATTAAGAGGATCAGTGCGAGTATTTAGTACAGAATGA
CTAGGATGACAGGGCCGGATTGCGCGGTCATGTGCAATTCAATAAATACA
TGCATACATAGATAAATACATCGAAGTACATCTTGAAGGGTGTCAGAAAG
AGCGTTTGCTCACAATCTTCGTGTAACCCTCCGAGAGCCCAGAAAACGTT
TTGGGTCACTTTTGTGACTTTGGTAAATGAGCAGCACATCAGACAGTTTT
TTCTGTAGCTCGTATTAGTTGTTCAGACTCTGAAATAATGGCAGCACAGA
CAGACAATAGACGCTGCAGTTCGTACGCAAAAACATCTTCTTGACGCGAA
TATAAGTTTCCGATGTTGCCAGGTGGTTGGACGCGGCAAGTTTCTTTTTG
CGATTTGGATCTCTGTTGGTTTGACCAGCGAGCTGTGACCATGATGTGAC
CCATTGACCTTCGTACCTCGTTTTGACCACGAGATTTGATGGGTTAGTGC
TGACTAATAACTTTGCCGAACGTAGTCTTCAGTTGCAAGGACAATACGCT
AAATGTTCGAATCAGTCAATCAAATCAATTAATGAAAATGACGTACGTAC
GTATAAGCGATGACATACATGCATACCAGGTACGTGATCTCTACTATAGT
ATGTATAGAATTGCCATCACGTAGAGCAGAGTATGGATGAACCGGTTAAG
GTTGCCAATTCCGCTCGTGGTCAGCTGAACAGGGAGAGCGAACATTTCCC
TGTCCCGTACGGATTTCGTGAGTTCGATTCTTGACAGGGTGATTCCTTTC
ATTCTGGTAAAGGGAAATCCAATCATTGTTTGAAGTGGCCTACGGGGGCT
GAACTTGCGCATCGCGATAAAAAATCATACTGGTACAGTAAGGCGAGAAC
CGCGGAGAGATTTGAAGATCCTGAAGTGACCACAGACAGGAGGACAATGG
TGCAGTAGATGGGGTTGGTAAAATCTAGCGCGTTGAGTACCTTCGGCCGT
AACGGAGATACAACCAAAAACAAACAGACTCCTTTGGGTGCCTTTCATTT
GACCTGTAGAAATCAACATCTTTATTTTAATTTCGTCTGATGTGGGAACG
ATAAAGCGAAGCACTGGTGGTACAGCAGTTATAATACAAGGTAATATTTA
TAATATTTGTATTACTCATATGATGTTTTTTACATACAACTACCGTGGGG
CGTGCGTGACCCCTGCACGGCACGTCACGATTCGACATGGGCAAAACGTC
ACGCCACGTCACGTCACGTCACGTCACAGGTGACTCTTGCTGTGGGGGTG
GTCTTTCAGCTGCTCTATCTGTACCACTACGATCTGTGGTCAGCGTTCGT
ACCGTTGGTGGGCGAGCTGGTTCTCATTTTGTATCTCACTGGCCTCAAGT
TATACTTCCACGACGGCGACAATGCTCCCGGTGAAGGCAAGATATCGACC
CTCTACACCAACGGCGTCACCAACGGCGCTGTAGACGACAAAGGTGCTGC
GGAAGAGGGGGAGATAAAGTATCAAGGTGTGAGGGATCAACGACGTTCTT
CCAGAAATGGAGGAGGGGTGGTTGGCGAATCAGGCGCGGGGCAGGTGAGA
TAATAATTCTCCCATCGCTTGTATCAGAGATTTACCCCCCAAATAGGTCT
GATCTCGGAAGAGATGGACTACCTACCCCTGCCGGTATGGATTACCTATT
AATACTTCATTAAGAACATGTAACGATATAGCCGGGGGATGCTCGGAAGG
TCTAGGTGCGCTCTGATTTTTCTTTAAACATTAAATGCCATAAAGAGGTT
TTGTATTTGCAGCCTTTGATCCAACCTAAGCGTTTTGACATTTTTTCCCC
CCTAACTGGGGGATGCTCAGAAGGTCTAGGTGCGTTCTGTTTTTTTTCTT
TAAACATTGTGGCATACCCTTTCTGTCCCGGGCGTGTACCTTCAAAAATA
AATATTTGTACAAGTTTCATGGCGCAACCTTTTCGTCGTCTAGCTTCATC
CAGCCGCCCATTTCTCTTGCTGCTTTTGTTGCTCCTATTAATATTTAGAC
TATAGACTCTACTGTTCACAAGGAGGAGAGAGACAGGAGAGAGAGAGAGA
GACAGGCAGACACATGTGCTCAGAGCTATACTAATACTATTATATTATAT
TTTAGTAGGAACTTTATACTATAAATAATAATATTACTTGTATGTATTAG
CTCGAATATATACTACCTGGTACGGCGTATTCGGTTGCCCGGGTGGTTTA
GTTGGTAACCTCGAAACCTTCTGACGTTGGGACGTGAGTTCGAATCTCGG
TGTCGTCACACGAACTGGGATTTTTCCTCACCGCAAAAAAAAAAAAAATA
TGCCCAACAAGTGGAGAACGATTAAATCGTTAGTACACAAAATTCGACTT
CACGGTCGACGAGGGAAAGGAACGGCTGAATCCTTCTCGCGTGAAAAACT
AAGGCAAGATCCGCAGAAGGAAGGTGGAAAAATCCTGTGTGACCTTCCTC
CTGCGTGGCCCCGGCTGATACGTCCACAAACCTGACGTCCAGAATAAATG
GGAAGACAACCACAACACATAAGCTGTTTATGTTACATATAAGCACACGG
AGGAAGTTGTCCGTTCCTTGTTTTGTTTGTGCAACTGGAATCTTTTCGAC
GCTACAAGCCGCAGCGTGCCTGAAATACAGAATGCTCGAACTTTTCTGGA
CGAAGAGGAGAGGAAAGGTAACAGATCATCCGATTCATCCTCTCCCAGTC
ATATTTTTCTTGATTTTTCTTCGTGACGAAACAACTTCTACTAATAGCTA
CTATTAATACTAAAATACATACAGTAGTACCTCGTTACCGTATACGACGT
TCACCAGGGACTTACTTCGAGTCTTCGTTGTTTCTATTTATAGAAGATTC
ACATTATGTCGAGTTGACAAAAACAGCGGCGTTAGAGATGACGGCGTTTC
TACCTCGATTTCAAATGCCTATCCTCGACTTGGTAACGAGTGACCTTCGA
GCTCCGAGCAGCAACCGAGGCCCCCCGTCACAACATGATCGTGTCTGCGC
TTCGTATTTCTGTCAGGGTTCTGCTGTGGTTTGAGGTCATCACTGGACCA
GGAGCGAAGATCCACTTTTGACCTCCTGTCCAGAGGTGATTTTTCTTGGG
CCCCGCCGCTATTGGCTCTCCTGCTCAAGCGAAAAAAACAAACTTGAAGG
ATAGGCTGCACACCATTCGAGGTTGCCGCGAGTCAAGGGATGATGGCAAT
GGCAATAGCAAGGATGTTGAGCGGGAAAGAGAGACCGTAGGAGGTGCGAC
TTGATGATCGGACAATCCTTCACTTGAGAAACACCCCCCGAGTTTGTTTT
AGAGATAAAATTGGCACCGTGCGGGCAGAGACGGAGGTGGTTCATTTATA
TCATACCCGGCATTTTTTTTTAGGGAAAAAGTTGGTAACGCTCGGGGAGA
GAATCGAGGTGGTTCATTAAAACCTGGCACGGAAGATTTTGCCTTGTGAA
CTGCCAAAATGAAAAGAGGCTGCTCTAATTTGCCACTTTACAGTGTTTTC
GGCCATAACATTACCGTGTATGTATTCAAGCTGTTAGTTGCGTGTGCAGT
TTTCCACCCGTGTTCCGCGCGTTGTCTCTTTCTACAGCGATTTGCTGTAC
GTTCACCGTGAACTCTTGTCTCCATAGCATCTGGTACAGAAGACGTGTTA
GAAGAAAAATCTTCACGCATCTAGACCCTCTGAGCCTCGTAACTGTGGTG
TGAATGATTGTGCTTGATTGAGCTCTTTGGCGGTCGTTGCGATAATCTGT
GTATAATGTAGGATCCGCCACCCGAGCGTTCTTCTTGTATGGAGGGCTGA
ACAACACAGGCTGTTACTTTAGCATTAAGAGTAGGTCGTTCCCATTTCAA
CTTGTGTTCGTGTGAAGGGGTATCCCCTACCTTCGTTCCTTTCTCTGCCC
GAGGACGATACGAGCATAATGACTCATTCGTAGTAATGGAAAAGCGCTTC
TATGGACGCGTGCATCTTACCGAGGGATTACAACCGCCCAAGTGCGCCCC
ACCCTTACACTATTGGAGCGTGTTTTCCAAACGCGAAAATGAGAACGCTA
C
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1122:45481..52981-

>mRNA_A-nodosum_M_contig1122.4.1 ID=mRNA_A-nodosum_M_contig1122.4.1|Name=mRNA_A-nodosum_M_contig1122.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at A-nodosum_M_contig1122:45481..52981- (Ascophyllum nodosum dioecious)
ATGGTGGATTACGTCGACATACTTGTTGATGTTGTGGGCTTCGTCGCCGG
TTTGCTAGTTTCGATCGCTCTGGTGCCGCAGATCTATCGAGCGCACAAGA
GAAAGAGTGCGAAGGACTTGAGCTACTCCTGGCAGGTGACTCTTGCTGTG
GGGGTGGTCTTTCAGCTGCTCTATCTGTACCACTACGATCTGTGGTCAGC
GTTCGTACCGTTGGTGGGCGAGCTGGTTCTCATTTTGTATCTCACTGGCC
TCAAGTTATACTTCCACGACGGCGACAATGCTCCCGGTGAAGGCAAGATA
TCGACCCTCTACACCAACGGCGTCACCAACGGCGCTGTAGACGACAAAGG
TGCTGCGGAAGAGGGGGAGATAAAGTATCAAGGTGTGAGGGATCAACGAC
GTTCTTCCAGAAATGGAGGAGGGGTGGTTGGCGAATCAGGCGCGGGGCAG
GGTTCTGCTGTGGTTTGA
back to top