mRNA_A-nodosum_M_contig1122.28.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1122.28.2
Unique NamemRNA_A-nodosum_M_contig1122.28.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.28.2 vs. uniprot
Match: D7G1T8_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T8_ECTSI)

HSP 1 Score: 441 bits (1133), Expect = 7.910e-151
Identity = 246/322 (76.40%), Postives = 273/322 (84.78%), Query Frame = 1 
Query:   22 MVDPLGADEEEASVQEQVANEVNDRMDRAVGELKDKYERGGKGYDAASDAQPTGAAYACAREEKARWKKAVKQQRLAAEATRREEDAELASQMRVAARLNGEIDSGEEDPDCGGGTXXXXXXXXXXXEELLAGLDADPEVRRIRESRMREMKRVYEARAANLAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLESKFLRIDAEKTPFFVQKLQVKILPTIVCFIDGIAVHHIIGFENLTTGLPDDKLDEWPLSNLARELALAKVIIYSQHDAPEDTRSKKNGSPFGTIRAGVYDGELSDDD 987
            MVDPLGADEEE S+QE VANEVNDRM RAVGELKDKYE+GGKGYDAASDAQPTGAAYA ARE++ + KKA++ QR AAEA  REEDAELA+QM+ +                    XXXXXXXXXXX+ELLAGLDADPE+ RIRESR+RE+KRV+EARA N+AKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLE+KFLRIDAEK PFFVQKLQVKILPT++CFIDG+AVH+IIGF+ LT GLP DKLDEWPLSNLARELALAK IIYSQ DAPE T  ++ G   G IRAG+ DG+ SD+D
Sbjct:    1 MVDPLGADEEEKSMQEMVANEVNDRMGRAVGELKDKYEKGGKGYDAASDAQPTGAAYAQAREQEKQRKKAIRDQRRAAEAATREEDAELAAQMKASXXXXXXXXXXXXXX------XXXXXXXXXXXDELLAGLDADPEICRIRESRLRELKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYSQRDAPEGTGPREQGGYTGAIRAGLNDGDFSDED 316
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.28.2 vs. uniprot
Match: A0A835YQ77_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ77_9STRA)

HSP 1 Score: 287 bits (734), Expect = 1.510e-90
Identity = 167/331 (50.45%), Postives = 217/331 (65.56%), Query Frame = 1 
Query:    1 SKFDKFTMVDPLG--ADEEEASVQEQVANEVNDRMDRAVGELKDKYERGGKGYDAASDAQPTGAAYACAREEKARWKKAVKQQRLAAEATRREEDAELASQMRVAARLNGEIDSGEEDPDCGGGTXXXXXXXXXXXEELLAGLDADPEVRRIRESRMREMKRVYEARAANLAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLESKFLRIDAEKTPFFVQKLQVKILPTIVCFIDGIAVHHIIGFENLTTGLPDDKLDEWPLSNLARELALAKVIIYSQHDAPEDTRSKKNGSPFGTIRAGVYDGELSDDD 987
            S   KF++VDPLG  AD++E ++Q+ V  EVN+RM +AV +LK KY   GKGY+A+ D  PTG AY   +EE A+   A+K Q  A +A +  E+ EL  Q++ A RL   +D  ++D                  +E L GLD DPE+ RIRE+R+ ++K  ++AR++NLAKGHG+YRE+ QDEFLPEVTSS +VV HFYH DFQRCK+MDM L  LAP HLE+KF++I+AEK PFFVQKLQV++LP +V F DGI+V  I GFE L         DEWP  NLA+ LALAK I Y+  DA +  R  +     G IRAG  D ELSD+D
Sbjct:   11 SAASKFSLVDPLGGAADDDEKTLQQAVTEEVNNRMGKAVDDLKGKYGSSGKGYEASHDNNPTGLAYQREKEENAKRAAAIKSQEDALKAEQDAEEQELQQQLQ-AHRL---LDESDDD------------------DEYLEGLDDDPELERIREARLAQLKAAHDARSSNLAKGHGRYREVTQDEFLPEVTSSARVVAHFYHNDFQRCKIMDMHLERLAPAHLEAKFIKINAEKAPFFVQKLQVRVLPCVVIFRDGISVAQIQGFEGLNEEQEKGTEDEWPTGNLAKRLALAKAIDYTASDALDQMRKAQVS---GVIRAGFGDAELSDED 316
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.28.2 vs. uniprot
Match: A0A4D9DBW2_9STRA (Thioredoxin domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBW2_9STRA)

HSP 1 Score: 192 bits (487), Expect = 9.070e-54
Identity = 138/336 (41.07%), Postives = 187/336 (55.65%), Query Frame = 1 
Query:   13 KFTMVDPLGADEEEASVQEQVANEVNDRMDRAVGELKDKYE------RGGKGY---DAASDAQPTGAAYACAREEKARWKKAVKQQRLAAEATRREEDA-ELASQMRVAARLN-GEIDSGEEDPDCGGGTXXXXXXXXXXXEELLAGLDADPEVRRIRESRMREMKRVYEARAANLAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLESKFLRIDAEKTPFFVQKLQVKILPTIVCFIDGIAVHHIIGFENLTTGLPDDKLDEWPLSNLARELALAKVIIYSQHDAPEDTRSKKNGSPFGTIRAGVYDGELSDDD 987
            KFTMVDP   D+    V + +A  VNDRM +AV EL+ K +      + G      DA+ D  PTG+AY   R+ +AR  K  +Q R  A   + +E A + A Q  +  +L    + S EED +                E+ L     DPE + IRE R+  +K  ++ +A N++KGHGQYREI QDEFLPEVT S +V+VHFYHKDF RCK+MD  L  LAP H+E+KFL+I+AEK PFFV KL VKILPT++ F D IA   + GFE L  G    + DE+P + +A  L   + I Y+     ++ R + + S    IR G       D+D
Sbjct:    4 KFTMVDPAQGDD----VYQHMAQTVNDRMGKAVEELRQKNDERTAALQSGASVPDEDASVDG-PTGSAY---RQVEAR--KRAQQHRAQARIRKSKEQAVDAARQEEIVQKLQESHLLSDEEDDEA---------------EDSL-----DPEFKLIRERRLAALKAQHQEKADNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHIETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIAEERLQGFEGLADGQSKGQEDEFPTARVAARLGKLEAIDYTAPPTLDELR-RFHLSQHAAIRGGTATTYDDDED 308
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.28.2 vs. uniprot
Match: A0A7S2RBF7_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBF7_9STRA)

HSP 1 Score: 190 bits (482), Expect = 7.430e-53
Identity = 126/320 (39.38%), Postives = 178/320 (55.62%), Query Frame = 1 
Query:    7 FDKFTMVDPLGA--------DEEEASVQEQVANEVNDRMDRAVGELKDKYERGGKGYDAASDAQPTGAAYACAREEKARWKKAVKQQRLAAEATRREEDAELASQMRV-----AARLNGEIDSGEEDPDCGGGTXXXXXXXXXXXEELLAGLDA--DPEVRRIRESRMREMKRVYEARAANLAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLESKFLRIDAEKTPFFVQKLQVKILPTIVCFIDGIAV--HHIIGFENLTTGLPDDKLDEWPLSNLARELALAKVIIYSQHDAPEDTR 915
             DK  MVDP+ A           E SVQ+ V  EV +RM +A  ELK KY RG  G DA+ D +PTGAAY  A  ++   ++A++ Q  AA     + DA+  +++R      +   + E + G+E+ D                  LL  L++  DPE+  IR  RM+++K  + A+  N+ KGHG   EIVQDEFLP +TS+ + V HFYH DF RCK+MD  L  LA  HLE+ FL+I+A+K PFF +KL +++LPT+VCF DG      H+IGF  L      D+ D+WP + L  +L    VI Y++    E+ R
Sbjct:    1 MDKIKMVDPMDALAPMRAADVSGEKSVQQAVQEEVENRMTKAAEELKQKYARGHGGADASVD-RPTGAAYTAAAAQERDRRRALRDQEQAAAYAADQADAQREAEVRAHFFAQSGNSDEEDEGGDEEVDS--------------DXXLLDELESSEDPELLAIRNLRMQQLKSEHTAKMENIRKGHGSLTEIVQDEFLPRITSAARAVCHFYHNDFHRCKIMDKHLSILAQTHLETLFLKINADKAPFFCEKLNIRVLPTVVCFFDGKTKPEQHVIGFSGLAQEADTDQ-DDWPTTRLEAKLGEIGVIDYTKPATEEELR 304
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.28.2 vs. uniprot
Match: A0A067CJU1_SAPPC (Thioredoxin domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJU1_SAPPC)

HSP 1 Score: 184 bits (468), Expect = 2.220e-51
Identity = 99/186 (53.23%), Postives = 128/186 (68.82%), Query Frame = 1 
Query:  430 DPEVRRIRESRMREMKRVYEARAANLAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLESKFLRIDAEKTPFFVQKLQVKILPTIVCFIDGIAVH-HIIGFENLTTGLPDDKLDEWPLSNLARELALAKVIIYSQHDAPEDTRSKKNGSPFGTIRAGVYDGELSDD 984
            DP+  R+RE RM++++  Y  +  NLAKGHG YREIVQDEFL EVTSS +VVVHFYH+DF+RCK++DM + ++A RH+E KFL++DAEK PFFV KL V++LPT++ F DGIA    I+GFE LT GL   K DE+P  NLAR LA    I  +  +A E T S K  S    I+   + G  SD+
Sbjct:  102 DPDFLRLRELRMKQLQEQYRVKQENLAKGHGDYREIVQDEFLKEVTSSPRVVVHFYHRDFERCKIIDMHMAKVAKRHIECKFLKLDAEKAPFFVTKLVVRVLPTVIYFKDGIASDDRIVGFEGLTDGLRAGKEDEFPTVNLARRLAKIGAIDVADDEA-EPTHSAKKSS----IQVAYHSGYDSDE 282
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.28.2 vs. uniprot
Match: A0A6G0X4T8_9STRA (Thioredoxin domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4T8_9STRA)

HSP 1 Score: 184 bits (466), Expect = 4.630e-51
Identity = 97/196 (49.49%), Postives = 134/196 (68.37%), Query Frame = 1 
Query:  403 EELLAGLDADPEVRRIRESRMREMKRVYEARAANLAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLESKFLRIDAEKTPFFVQKLQVKILPTIVCFIDGIA-VHHIIGFENLTTGLPDDKLDEWPLSNLARELA-LAKVIIYSQHDAPEDTRSKKNGSPFGTIRAGVYDGELSDD 984
            +E L  LD DP+  R+RE R+++++  Y+ +  NLAKGHG+YREIVQDEFL EVTSS +V+VHFYH+DF+RCK+ DM L ++A RH+E K L+IDAEK PFFV KL V++LPTI+ F +G+A  + IIGFE LT G+     DE+P  NLAR LA +  +      D P  +R K +     +I++ V+    SD+
Sbjct:   94 DEFLDELDQDPDFMRLREMRLKQLQDQYKIKQENLAKGHGEYREIVQDEFLKEVTSSPRVIVHFYHRDFERCKITDMHLAKIAKRHIECKVLKIDAEKAPFFVSKLVVRVLPTIILFEEGVANSNRIIGFEGLTDGVRAGAEDEFPTGNLARRLAKIGAIDSADDDDDPSPSRQKTS-----SIQSSVHTNYDSDN 284
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.28.2 vs. uniprot
Match: K3X9E1_GLOUD (Thioredoxin domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X9E1_GLOUD)

HSP 1 Score: 179 bits (454), Expect = 3.070e-49
Identity = 96/181 (53.04%), Postives = 125/181 (69.06%), Query Frame = 1 
Query:  403 EELLAGLDADPEVRRIRESRMREMKRVYEARAANLAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLESKFLRIDAEKTPFFVQKLQVKILPTIVCFIDGIAV-HHIIGFENLTTGLPDDKL-----------DEWPLSNLARELALAKVIIYSQHDAPED 909
            + LL+ LD DPE+ R+R++RM ++K+ YE +   LAKGHG+YREI QDEFL EVTSS  VVVHFYH DF+RCK+MDM LG LA  H+E KFL+++AEK PFFV+KL V++LPT+VCF DGIA    +IGF+ LT    +++            D +P   LAR+L    VI  + HDA ED
Sbjct:  109 DALLSELDHDPELERLRQARMNQLKQAYEQKQELLAKGHGEYREITQDEFLKEVTSSPLVVVHFYHNDFERCKIMDMHLGRLAKTHIECKFLKLNAEKAPFFVEKLMVRVLPTVVCFKDGIAFPSRVIGFDGLTADDEEEQSTFGSRGHLTSSDTFPTIALARKLVDIGVI--NHHDADED 287
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.28.2 vs. uniprot
Match: W4G8Q5_9STRA (Thioredoxin domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8Q5_9STRA)

HSP 1 Score: 179 bits (454), Expect = 3.530e-49
Identity = 97/191 (50.79%), Postives = 129/191 (67.54%), Query Frame = 1 
Query:  421 LDADPEVRRIRESRMREMKRVYEARAANLAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLESKFLRIDAEKTPFFVQKLQVKILPTIVCFIDGIAVH-HIIGFENLTTGLPDDKLDEWPLSNLARELALAKVIIYSQHD--APEDTRSKKNGSPFGTIRAGVYDGELSDD 984
            LD DP+  R+RE R+++++  Y+ +A NLAKGHG YREI+QDEFL EVTSS +V+VHFYH+DF+RCKVMDM LG +A RH+E K L+IDAEK PFFV KL V++LPTI+ F +GIA    ++GFE L   LP  + DE+P  NLAR LA    +  S  D  A +   S +      +I+ G+     +DD
Sbjct:  104 LDQDPDFMRLREVRLKQLQEQYKLKAENLAKGHGDYREILQDEFLKEVTSSARVLVHFYHRDFERCKVMDMHLGRIAKRHVEVKVLKIDAEKAPFFVAKLVVRVLPTIILFENGIANDTRVVGFEGLADDLPLGREDEFPTVNLARRLAKMGALNSSDQDEDAEDHDGSCRRQDNKPSIQQGLNRSYDADD 294
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.28.2 vs. uniprot
Match: A0A024ULN7_9STRA (Thioredoxin domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024ULN7_9STRA)

HSP 1 Score: 178 bits (452), Expect = 5.710e-49
Identity = 95/189 (50.26%), Postives = 128/189 (67.72%), Query Frame = 1 
Query:  421 LDADPEVRRIRESRMREMKRVYEARAANLAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLESKFLRIDAEKTPFFVQKLQVKILPTIVCFIDGIAVH-HIIGFENLTTGLPDDKLDEWPLSNLARELALAKVIIYSQHDAPEDTRSKKNGSPFGTIRAGVYDGELSDD 984
            LD DP+  R+RE R+++++  Y+ +A NLAKGHG YREIVQDEFL EVTSS +V+VHFYH+DF+RCK++DM LG  A RH+E K L+IDAEK PFF+ KL V++LPTI+ F +GIA    I+GFE LT  +P    DE+P  NLAR LA    +  +  D       +K+     +I+ G+  G  +DD
Sbjct:  101 LDQDPDFIRLREIRLKQLQEQYKLKAENLAKGHGDYREIVQDEFLKEVTSSARVLVHFYHRDFERCKIIDMHLGRFAKRHVEVKVLKIDAEKAPFFISKLVVRVLPTIIFFENGIANDDRIVGFEGLTDDVPLGHEDEFPTVNLARRLAKIGALNSADDDXXXXXXGRKDKR--SSIQQGLNRGYDADD 287
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.28.2 vs. uniprot
Match: A0A3R7MXH3_9STRA (Thioredoxin domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MXH3_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.540e-47
Identity = 123/314 (39.17%), Postives = 171/314 (54.46%), Query Frame = 1 
Query:   13 KFTMVDPLGADEEEASVQEQVANEVNDRMDRAVGELKDKYERGGKGYDAASDAQPTGAAYACAREEKARWKKAVKQQRLAAEATRREEDAELASQMRVAARLNGEIDSGEEDPDCGGGTXXXXXXXXXXXEELLAGLDADPEVRRIRESRMREMKRVYEARAANLAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLESKFLRIDAEKTPFFVQKLQVKILPTIVCFIDGIAV-HHIIGFENLTTGLPDDKL--------------DEWPLSNLARELALAKVIIYSQHDAPED 909
            KF+M +  G  +  A V      E +DRM  A+ +LK K ER                      +EK R ++ V+Q+R  AE T+R +DA  A     A   +      EE+                  E +L  LD DPE+ RIR +R++++K  +E + A LAKGHG++REI QDEFL EVTSS  V VHFYH+DF+RCK+MDM LG LA  H+E KFL+++AEK PFFV+KL +++LPT+VCF DG+A    +IGF+ LT    + +L              D +P + LAR+L    V I + H+  ED
Sbjct:    4 KFSMANTSGLFDSAAHV------EASDRMQGAMEDLKIKNER----------------------QEKIRAQQEVQQEREEAEKTKRIQDAYAAKAAEKAENRSFIGQKKEEEE------------LDSDDEAMLDELDEDPELDRIRAARLKQLKLEFEEKQALLAKGHGEFREIAQDEFLKEVTSSPLVAVHFYHRDFERCKIMDMHLGRLARNHIECKFLKMNAEKAPFFVEKLVIRVLPTVVCFKDGVAFPDRVIGFDGLTEDDEEAELAAFGTRANHHATSSDTFPTAALARKL----VEIGAIHEQDED 273
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1122.28.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1T8_ECTSI7.910e-15176.40Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A835YQ77_9STRA1.510e-9050.45Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A4D9DBW2_9STRA9.070e-5441.07Thioredoxin domain-containing protein n=5 Tax=Mono... [more]
A0A7S2RBF7_9STRA7.430e-5339.38Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A067CJU1_SAPPC2.220e-5153.23Thioredoxin domain-containing protein n=2 Tax=Sapr... [more]
A0A6G0X4T8_9STRA4.630e-5149.49Thioredoxin domain-containing protein n=1 Tax=Apha... [more]
K3X9E1_GLOUD3.070e-4953.04Thioredoxin domain-containing protein n=1 Tax=Glob... [more]
W4G8Q5_9STRA3.530e-4950.79Thioredoxin domain-containing protein n=6 Tax=Apha... [more]
A0A024ULN7_9STRA5.710e-4950.26Thioredoxin domain-containing protein n=1 Tax=Apha... [more]
A0A3R7MXH3_9STRA2.540e-4739.17Thioredoxin domain-containing protein n=4 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1122contigA-nodosum_M_contig1122:238601..244772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1T8
PFAMsPhosducin,Thioredoxin
Model size1401
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006457,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007010,GO:0007017,GO:0007049,GO:0007329,GO:0008092,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009371,GO:0009373,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015631,GO:0016043,GO:0016049,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019438,GO:0022402,GO:0030865,GO:0031122,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031683,GO:0032506,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042221,GO:0042455,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043622,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046019,GO:0046116,GO:0046483,GO:0048285,GO:0048487,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051211,GO:0051252,GO:0051254,GO:0051301,GO:0051716,GO:0055086,GO:0060255,GO:0061640,GO:0065007,GO:0070887,GO:0071310,GO:0071444,GO:0071704,GO:0071840,GO:0080090,GO:0097435,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901522,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1902410,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons9
Evalue3.71e-153
EggNOG OGsCOG0526@1|root,KOG1672@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-07_004190.1
Descriptionqueuosine biosynthetic process
Cds size972
COG categoryCO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1122.28.2prot_A-nodosum_M_contig1122.28.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1122 239009..244751 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866522.678725-UTR-A-nodosum_M_contig1122:238600..2390081680866522.678725-UTR-A-nodosum_M_contig1122:238600..239008Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1122 238601..239008 -
1680866522.7998548-UTR-A-nodosum_M_contig1122:244751..2447721680866522.7998548-UTR-A-nodosum_M_contig1122:244751..244772Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1122 244752..244772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866522.689578-CDS-A-nodosum_M_contig1122:239008..2391281680866522.689578-CDS-A-nodosum_M_contig1122:239008..239128Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 239009..239128 -
1680866522.7092564-CDS-A-nodosum_M_contig1122:239654..2398041680866522.7092564-CDS-A-nodosum_M_contig1122:239654..239804Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 239655..239804 -
1680866522.7223365-CDS-A-nodosum_M_contig1122:240394..2405031680866522.7223365-CDS-A-nodosum_M_contig1122:240394..240503Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 240395..240503 -
1680866522.7315998-CDS-A-nodosum_M_contig1122:240967..2410561680866522.7315998-CDS-A-nodosum_M_contig1122:240967..241056Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 240968..241056 -
1680866522.7435446-CDS-A-nodosum_M_contig1122:241704..2417911680866522.7435446-CDS-A-nodosum_M_contig1122:241704..241791Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 241705..241791 -
1680866522.757133-CDS-A-nodosum_M_contig1122:242055..2421661680866522.757133-CDS-A-nodosum_M_contig1122:242055..242166Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 242056..242166 -
1680866522.767878-CDS-A-nodosum_M_contig1122:242412..2425651680866522.767878-CDS-A-nodosum_M_contig1122:242412..242565Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 242413..242565 -
1680866522.7764173-CDS-A-nodosum_M_contig1122:242965..2430851680866522.7764173-CDS-A-nodosum_M_contig1122:242965..243085Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 242966..243085 -
1680866522.7881207-CDS-A-nodosum_M_contig1122:244718..2447511680866522.7881207-CDS-A-nodosum_M_contig1122:244718..244751Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 244719..244751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1122.28.2

>prot_A-nodosum_M_contig1122.28.2 ID=prot_A-nodosum_M_contig1122.28.2|Name=mRNA_A-nodosum_M_contig1122.28.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=324bp
MVDPLGADEEEASVQEQVANEVNDRMDRAVGELKDKYERGGKGYDAASDA
QPTGAAYACAREEKARWKKAVKQQRLAAEATRREEDAELASQMRVAARLN
GEIDSGEEDPDCGGGTGAGEEEEEDSDEELLAGLDADPEVRRIRESRMRE
MKRVYEARAANLAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCK
VMDMRLGELAPRHLESKFLRIDAEKTPFFVQKLQVKILPTIVCFIDGIAV
HHIIGFENLTTGLPDDKLDEWPLSNLARELALAKVIIYSQHDAPEDTRSK
KNGSPFGTIRAGVYDGELSDDDA*
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mRNA from alignment at A-nodosum_M_contig1122:238601..244772-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1122.28.2 ID=mRNA_A-nodosum_M_contig1122.28.2|Name=mRNA_A-nodosum_M_contig1122.28.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6172bp|location=Sequence derived from alignment at A-nodosum_M_contig1122:238601..244772- (Ascophyllum nodosum dioecious)
TCTAAGTTCGACAAGTTCACCATGGTGGATCCATTGGGGGCTGACGAGGA
GGAGGTGAGTTTCCAAAGGACAGGTTGGACGTGAGGTAGAGGCTAATGTG
CTCCTGTAATCCCGTTACCCCTGAAGCTCGACCACTTGGCTTCAAGTGTA
GACAAAGAGAGCTACCGTTGTCCTCGGAGTGCTCTCTGTGTTACGGAAGT
GCACAAAAAAGCGGCAATACCGTAAAAAGATGCCCCAGGCACACACACGA
TGCACGAGGCTGTCGATACAGGGGAAACGCTGTATTTCACGGGACCAGTT
CACCGCAGTGCGGCGCACTAAATATTGAAAAATTGAAGTACAACAAATAG
TATACAAGCAGCTATATTATTTGTTTCTCCATCGCTATTTAGTTTTATCG
AAGAGGCACAAAAGACTAGTCTACAGTAACAGCGAGTGGTGATAAGATTT
GAGTCGAGTTTTTGTATCCGCAAGAGCGCTACAAAATATGTAGATTAAAC
TTTTGCTTTTTGCTCTGCTGCTCTCCAAGTTCGAACACTATTAATAATTA
ATACGGTATCAATGCGGGTTAGTTAGAAATACAGTAGGTGGGCGGCAGAA
CTAGGGTTGCAAAGTAGCAAAGTGAAAATGAAAGACAATGGGGAAAAAGA
GCACTACAGTATCGTAGGCACTGCTGTCCAAGCGGGAACCGTGTCTTGAC
AGTTCGCTCTTGGTAACTATCGCTGGTTTCACTTTACATTGTAGCGCGTG
TGTAGCGTGTTTTCCATCCATTGCCGTAAGTATCGGAGTCTTGGCACACC
CCCTAGACTGACTTTCCAGGCTCGAATGCTCCACAACCAAGAGGATGTGA
ACACCGACCGATACGTCTAAAGAAAGCTCTCGACGAGATCTTTCGAAAAC
CGCCCTTTTCGGCATTGGCACCATCTTGGTTGTGGAACAATCGAGCCTGG
AAAGTCAGTCTAGGGGGTGTGCCAAGACTCCGACACTTACGGTAATGGAT
GGAATAGGCCACCTGACGCGGCTTGGAGTGCTCTCTGTGTAGACAGACAG
GGCGGGCCTTAAAGCGATGCATGCCACGAAAAGGAGGCCTTAAAGCAAAC
GATTACTTTTGTTGATCGGCGCGACTCGTAAGTAGCTCTATCGATAAGTT
TTGCTTCACGTTCCTTTCTGTATAAAACGCAGTTGTTACTTTAGTCTAGG
GGGAGACAGGACGACATACTTCTGTTACTCCATCAACGCCCGGTCCGCCT
GTTTATGATAGATACCTTTTCACAATCTAACCCGATCTAAGGAATGGAAA
GGGACTGCGCGCGAGGCTTGCACGAAATAAAATATTTTGGGCAACGTTTG
GATAGCATGAGGAGAGAGAGTTTTGTGTCTTGTGTTTCCAAAAATCAGGT
ACTGCTGCACGCCCGGAAACTTGTGTCGTTTGTGGAGATCAACGCGGCAA
AGGCGACTGCTTTTTGTTGAATCCTTGTGAGAGAGTGCGTTCGGTAAACT
GCTGACTAAACCCCAGAACTACAGAATCACTTCCACCTCTCCAAGAAGTA
GCCGAGGTCTTCGTTACGAAAGGACCGCGCAGAGAGATACCGTGCGGTGG
CAGGTACGCCCAACGCCCCCGCCTGCCGATTCGTTCCCCCCTTTCCCCTC
GCGGTCACCGCACCTCCCATCGCATCCCCGTCTCTAGGCGAGCGTGCAAG
AACAAGTGGCGAACGAAGTGAACGATCGCATGGACCGTGCGGTCGGGGAG
CTCAAGGACAAATACGAGCGGGGTGGCAAGGGCTACGACGCAGCCTCCGA
TGCGCAGGTGAGCAAGAGTTCGATTCCTCCCGACGGGAAAGGCGCATGAT
CGTTGCAACGTGTGGTGTAATCATGTATGCGTGTGCGGGAGGGTTGTGTT
TTGCGCTGTGTTTCGATGTAGGGGCCTGATTGTTGAAGCGAACAAGGGAA
GAGGAAGAGTTAAAAAGTTAAAGGACGAAAAAGCTGCCGTGCCACCCCGC
GGACTGGTATCAGTCCTTTACAAGAGGAGTGTGCGACGCATAGCCCTCAA
AAAGATATGTCCTCCCTGAATCTCACGTTACACCGGGAGAGATTAAGCTG
ATGTGGCACATCCTGGTAACTTGCCCCGCCCTCCCTCCTCCTCCGCCCAT
CCCAAATATATTTGAACGAAATATATACAATGGCGGCTGGGGGGGGGGAA
TATTCAGCCAACGGGAGCGGCGTACGCTTGCGCGAGAGAGGAAAAGGCAA
GGTGGAAAAAAGCGGTCAAGCAGCAGCGTCTGGCGGCGGAGGCAACAAGG
CGTGAGGAGGACGCGGAACTCGCGTCTCAGATGAGAGTCGCGGCGAGGCT
CAATGGGGAAGTGAGTATACTCGAACTTTTACGATTAAGGTCAGCGCTTG
GCGAACACTGGCGAACGGACGTTATTCTCAACGGGCGACATGCGTGTGTT
GATTGCATCATTGCTCGTGCGAAGGGATACCAACATACTGTGGCGCAGTG
ACAATGGTGTTGTATGTTTTTGACGGCGTTATTGTTTCCGCTGACCCGTG
CTCGTCTTCCGCTTGTTTGGGCACGCTCCGACCCTCGGGATGCCTTTGCG
AAGCAGATAGATTCGGGGGAGGAAGACCCCGATTGTGGTGGAGGAACGGG
GGCAGGGGAAGAGGAGGAGGAAGACAGCGACGAAGAACTCCTAGCGGGGT
TGGATGCGGACCCAGAGGCGAGGCAGGAGTCTTACAACGCCCACGAAGGG
TCAAAGTTTGGCAAGCAAGGATGAGGGATTGCGCATGGTTCTCGTGGTGG
TGTAGGTTAGAGCGGAGTGTGGGAGAGTGGTGAGTTTGGGGTCCGCGGCG
TGTTCATACACAGTAGAGAGGTGTCGGATCACCTGGACATCGTGTGTTCC
CTTACCGCCCTTTTCCTTTTTTCCTCCCTTCCCCATACCCGATATCTTCC
CCGGTGACGTCCAAACGATTTCTACGAGAAGGTTCGCCGGATCCGCGAGA
GCCGCATGCGCGAGATGAAGAGAGTGTACGAGGCACGGGCGGCGAACCTC
GCCAAGGGACACGGCCAGGTGGATATCTACGAACACCCAGAAGTATCGCA
GCGTCACCACTCGCCCTAGAAAGAGTCCCCCAAACGTTCAGGCAGCAGGA
AAATTGAAATGAGCGGGGTGGAGGGTTGGCGGATAGGCGGAGAGCGGTTT
CCGGTCTGACGAAAGTCTTGGTCAGTACTCTCCGTCGACCTTTTGCAACA
AGAAAGTAGTATACATGCGTGTTGATTTATTTTCCTTGAGAATAGAAATA
CAAGTACGCGGGATGGTTTTTTGCCAAGCGCAAAGCCTTGGCATGCGCCG
ATGTCGTGGTATCAATAGTAGACCTGGGGTACACTCTGGATGAAAGACTG
CTAAAATGCTGTTGCTCCGAGTAGGTCCGCGGAGCGATCGAGTGCACTCA
AAATCGTAAGAATTTTCACCTCTGACCGACAGCTGATGGGCAAAAACGAC
CGGTCTCGCAACAGAGAAAATTCATATGGTATTTTCTTGATTTGAACCTC
TCTTGGTGACTTACTCTTGACATACGGGTTCCATCCTGTCTCATTTTGAA
GCGGAAGACTGGTACCTCTTCCCGCGCATTACGTCGGCGCGTTCTAGGTA
AAACAAAACGCCTCCTCTCCTCCGTATGTGCGCGTGCGTGCTTGTGTGCG
AACGTATCGTCGACAGTATCGCGAGATCGTGCAGGACGAGTTCCTGCCAG
AGGTAACCTCGAGCGAAAAGGTCGTTGTGCATTTCTACCACAAAGACTTC
CAACGGTGAGCCGCGAGGTGACGAAACCGCTCAGGCTCGCCGCCATCCAC
GCCGTCCTTTTTCGATCTCTCTTGTCTTACCTTTAAAGGAGTGGTCAACA
CCCTCCAACCAAAGAGGGCCGAGGCCTGGGGCAATGTAGATAAGGAGGTA
TTGAGAACGAGTTTTTTTCAACGTCACATGCGATGGAAAGCTACCCGCAG
AGACATGCGCCCTGCCGAATTCAAAACGTCGCGTGGAAATCGTGAGGCAG
ACTATGAGGCGAGCCGTCGAAAGGAATGACGACACGTTTGTTCATTCTCC
GTCCCCGTTCGTTCAAGGGTTTACGACATATTTTCTAATTTTGTGCCCAT
CATTATCGCTTGTGTAGCGATAATGATGGGCACAGCCACGATTGTCGGTG
TTTCCGGGTGTATTTCCAAGTGCTCGATCTATTTTCAATTCCGTTTGGTG
GTGCCGCATTTCCGCACAGATGCAAGGTGATGGATATGCGACTCGGCGAG
CTGGCCCCAAGGCATCTGGAGTCTAAGTTCTTGCGGATAGACGCCGAAAA
GACCCCGTTCTTCGTCCAGAAGCTTCAGGTGGAACCTTCCAGCAGCGGGG
GGCATTTTTTCATTTTTCCCAGGGATCCGTGTGAAAGGGAATCACCGATA
TCCCCCAGCCCCTCGCCCCCGTGGCGCGTGCGTCGCGTATGCAGCCGACC
GAAGCGGACAGGATCCACGCTATCCCCCATGCAAGTCTTTAGAAGCTTTG
CTGGAGAGTGTCATCTCCTGAGATGTGCCCTCGTGGAAGTGCTTCTCTTC
CTTCGCACGGGAAAGGAATCCACGGGTGCCGATAGTCAAAACTACAACGC
CGGTCCTCCTCTGCCGCGGCGGCACACCACACGTGCGCGGCCGACATTCT
GCGGTGGCTGCCTTCCTCACCCTCCAGTGATTTCTTAATTTTCCGGTCCG
TCTTCCATTGACACGTTGACGCCCCCCCCAACCCTTCCCACCTGACTCCG
TCTTCCAATATAGTATACTATATACTATATATACTATACCAGCACATGTT
TTTGTTTGGCTCTTGAGCTTTGGCTTTCCTCGTTTGTCATGCTGTCGACA
TTGGAGCTATTAATAGACTATATTCTTAGACTACCTTTTTGCCTCTCTCC
CCCTCCCCCCCAATCTAGGTGAAGATCCTACCGACGATCGTGTGTTTCAT
TGACGGTATCGCCGTGCATCACATCATCGGCTTCGAAAATCTCACGACAG
GGTTGCCGGACGACAAGCTCGATGAGTGGCCGCTGTCCAACCTAGCCAGG
GAGCTAGCGCTCGCGAAGGTGCCCGTTTTTTTTCTGTTGGAAGAAGCGGC
TACGCACGCTGTGTTTCTCTGTAGGCAGAAGCGGCTTCGCAACATGCACG
AGTCCCGTTTTATTTTTAGGCACGCCCTTTGCGTGGCCACTTGCTTTATT
AATAGTCGAAAGTCAATAGTCAATACGGTCGAGAGTACAGACTCTTACTG
AGAAAATGTGAGGGCACTTGTTTTGGCATCAACATCACAGGCGCGTTTGC
CTTGACCGTCTGGAGTCCTAGGTACACGTACGCATGCTTGCGAGCGACAT
CATCGGTCTCTTTGAGTGGGCGAGAGCCCGCATCTGTTGCGTTTGCGTTG
TCGAGGTATAGACGTTACAGACACTATAAGGCATCGCATATAGGGGGTCG
TCGCCGCCAATATCAAACCCTTGGCTGGTTTGTTGAACAGATTCCGCCTT
CGGGGCAGGCTCGTTGGTCGGCAGGGATGAAACCACATTTGATCCCCCCC
CCCTCCGCACAAACCTTTTCAACTCTCTGGTCTTCCGCTGCCAGGTGATT
ATCTACAGTCAGCACGACGCTCCTGAGGATACACGCTCGAAAAAAAACGG
CAGCCCGTTCGGGACGATCCGAGCCGGGGTATACGACGGCGAACTTTCAG
ACGACGACGCGTGAATTCTAGAGTTGTTGGCAAAACAGACTGAAATAAAC
TGTTACCGTAGGGAAGGGACGAGTTGAGCCAGTTTTGGCTTCTTTGAAGG
GGTGATGAGGAAGGCCATATTTCCCTTGTACCCGACGTGCTACAGTTTAT
TCATAGGTGAACTGTCTCCATCACTTGTTGTGCGCTTCACCGTTGAAGGA
AGGTTCTCAGGATCTGGTGCGGTGTAATGTGATACCTGATTGTAGATAAA
ATAAAGATGCTGCTCGCCACTACGAGATCATAATAAATACCAGTACGTGG
TATTTATTATAATAGTACAAAGTTGTACGAAGTACAGAAATACACGCGGT
GATTTTTGCCTAACAAGAAAAAGTTGAACTCTGCTTTTTTCTTACCCCCT
ACCGAAGGGACCAATCAATATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1122:238601..244772-

>mRNA_A-nodosum_M_contig1122.28.2 ID=mRNA_A-nodosum_M_contig1122.28.2|Name=mRNA_A-nodosum_M_contig1122.28.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at A-nodosum_M_contig1122:238601..244772- (Ascophyllum nodosum dioecious)
ATGGTGGATCCATTGGGGGCTGACGAGGAGGAGGCGAGCGTGCAAGAACA
AGTGGCGAACGAAGTGAACGATCGCATGGACCGTGCGGTCGGGGAGCTCA
AGGACAAATACGAGCGGGGTGGCAAGGGCTACGACGCAGCCTCCGATGCG
CAGCCAACGGGAGCGGCGTACGCTTGCGCGAGAGAGGAAAAGGCAAGGTG
GAAAAAAGCGGTCAAGCAGCAGCGTCTGGCGGCGGAGGCAACAAGGCGTG
AGGAGGACGCGGAACTCGCGTCTCAGATGAGAGTCGCGGCGAGGCTCAAT
GGGGAAATAGATTCGGGGGAGGAAGACCCCGATTGTGGTGGAGGAACGGG
GGCAGGGGAAGAGGAGGAGGAAGACAGCGACGAAGAACTCCTAGCGGGGT
TGGATGCGGACCCAGAGGTTCGCCGGATCCGCGAGAGCCGCATGCGCGAG
ATGAAGAGAGTGTACGAGGCACGGGCGGCGAACCTCGCCAAGGGACACGG
CCAGTATCGCGAGATCGTGCAGGACGAGTTCCTGCCAGAGGTAACCTCGA
GCGAAAAGGTCGTTGTGCATTTCTACCACAAAGACTTCCAACGATGCAAG
GTGATGGATATGCGACTCGGCGAGCTGGCCCCAAGGCATCTGGAGTCTAA
GTTCTTGCGGATAGACGCCGAAAAGACCCCGTTCTTCGTCCAGAAGCTTC
AGGTGAAGATCCTACCGACGATCGTGTGTTTCATTGACGGTATCGCCGTG
CATCACATCATCGGCTTCGAAAATCTCACGACAGGGTTGCCGGACGACAA
GCTCGATGAGTGGCCGCTGTCCAACCTAGCCAGGGAGCTAGCGCTCGCGA
AGGTGATTATCTACAGTCAGCACGACGCTCCTGAGGATACACGCTCGAAA
AAAAACGGCAGCCCGTTCGGGACGATCCGAGCCGGGGTATACGACGGCGA
ACTTTCAGACGACGACGCGTGA
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