mRNA_A-nodosum_M_contig1122.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1122.1.1
Unique NamemRNA_A-nodosum_M_contig1122.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.1.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.240e-19
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGNVDRG-KEKEWTDCVADDLRLFGV 273
            +LLR++G   K    R LSY   L R +CES+E T+R RRLL+AGAL R  D RLPKR+M GEL       RG +E+ W  CV DDL+ FG 
Sbjct:  160 LLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA 251
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.1.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.270e-19
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGNVDRG-KEKEWTDCVADDLRLFGVT-GDWKT 291
            +LLR++G   K    R LSY   L R +C+S+E T+R RRLL+AG+L R  D RLPKR+M GEL       RG +E+ W  CV DDL+ FG   G  KT
Sbjct:   28 LLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKT 126
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.1.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.610e-18
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGNVDRG-KEKEWTDCVADDLRLFGV 273
            +LLR++G   K    R LSY   L R +C+S+E T+R RRLL+AGAL R  D RLPKR+M GEL       RG +E+ W  CV DDL+ FG 
Sbjct:  184 LLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA 275
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.1.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.800e-18
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGNVDRG-KEKEWTDCVADDLRLFGV 273
            +L R++G   K    R LSY   L R +C+S+E T+R RRLL+AGAL R  D RLPKR+M GEL       RG +E+ W  CV DDL+ FG 
Sbjct:  423 LLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA 514
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.1.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.040e-18
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGNVDRG-KEKEWTDCVADDLRLFGVT-GDWKT 291
            +LLR++G   K    R LSY   L R +C+S+E T+R RRLL+AGAL R  D RLPKR+M GEL       RG +E+ W  CV DDL  FG   G  KT
Sbjct:  512 LLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKT 610
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.1.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.420e-17
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGNVDRGK-EKEWTDCVADDLRLF 267
            +LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+M GEL    N  RG  E+ W  C+ DDL++F
Sbjct:  441 LLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMF 530
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.1.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.530e-17
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGNVDRGK-EKEWTDCVADDLRLF 267
            +LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+M GEL    N  RG  E+ W  C+ DDL++F
Sbjct:  139 LLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMF 228
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.1.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.790e-17
Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGNVDRGKEKE-WTDCVADDLRLFGVT-GDWKT 291
            +LLR++G   K    R LSY  A  R +C+S+E T+R RRLL A AL R  D RLPKR+M GEL       RG +K+ W  CV DDL+ FG   G  KT
Sbjct:  140 LLLRVIGYKRKKDTYRQLSYAQAPKRVECQSVEATIRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFGADHGSTKT 238
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.1.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 8.270e-17
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGNVDRGK-EKEWTDCVADDLRLFG---VTGDW 285
            +LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+M GEL    +  +G  E+ W  C+ DD+++F    + G W
Sbjct:  190 LLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARELRGSW 288
[Close]
BLAST of mRNA_A-nodosum_M_contig1122.1.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 8.850e-17
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGNVDRGK-EKEWTDCVADDLRLF 267
            +LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+M GEL    +  +G  E+ W  C+ DD+++F
Sbjct:  139 LLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 228
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1122.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAH7_9PHAE1.240e-1951.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JYE2_9PHAE2.270e-1948.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1X4_9PHAE2.610e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLT1_9PHAE6.800e-1848.91Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KS82_9PHAE7.040e-1849.49Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KA81_9PHAE2.420e-1751.11Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4M0_9PHAE2.530e-1751.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2V4_9PHAE6.790e-1748.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX9_9PHAE8.270e-1745.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLH5_9PHAE8.850e-1747.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1122contigA-nodosum_M_contig1122:25954..26247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog6500.XP_005102894.1
PFAMsRVT_1
Model size294
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.65e-07
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria
DescriptionRibonuclease H protein
Cds size294
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866521.6099277-CDS-A-nodosum_M_contig1122:25953..262471680866521.6099277-CDS-A-nodosum_M_contig1122:25953..26247Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1122 25954..26247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1122.1.1prot_A-nodosum_M_contig1122.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1122 25954..26247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1122.1.1

>prot_A-nodosum_M_contig1122.1.1 ID=prot_A-nodosum_M_contig1122.1.1|Name=mRNA_A-nodosum_M_contig1122.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
MLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRM
GDHRLPKRVMSGELENAGNVDRGKEKEWTDCVADDLRLFGVTGDWKTA
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mRNA from alignment at A-nodosum_M_contig1122:25954..26247-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1122.1.1 ID=mRNA_A-nodosum_M_contig1122.1.1|Name=mRNA_A-nodosum_M_contig1122.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig1122:25954..26247- (Ascophyllum nodosum dioecious)
ATGTTGCTTCGAATTCTGGGAGCTTGGTGCAAGTCGCCGAACAAGCGCAT
CCTCTCGTACAAAGATGCTCTTCACCGAACCCAATGCGAGAGCATCGAAA
CAACCGTACGCACGAGGAGGTTGTTGTGGGCGGGGGCGCTTCTCCGCATG
GGTGACCACAGGCTACCCAAGAGGGTCATGTCGGGAGAACTCGAGAACGC
GGGAAACGTGGACCGGGGGAAGGAGAAAGAGTGGACGGACTGCGTGGCAG
ATGATCTTCGGCTATTTGGCGTCACGGGGGACTGGAAAACCGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1122:25954..26247-

>mRNA_A-nodosum_M_contig1122.1.1 ID=mRNA_A-nodosum_M_contig1122.1.1|Name=mRNA_A-nodosum_M_contig1122.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig1122:25954..26247- (Ascophyllum nodosum dioecious)
ATGTTGCTTCGAATTCTGGGAGCTTGGTGCAAGTCGCCGAACAAGCGCAT
CCTCTCGTACAAAGATGCTCTTCACCGAACCCAATGCGAGAGCATCGAAA
CAACCGTACGCACGAGGAGGTTGTTGTGGGCGGGGGCGCTTCTCCGCATG
GGTGACCACAGGCTACCCAAGAGGGTCATGTCGGGAGAACTCGAGAACGC
GGGAAACGTGGACCGGGGGAAGGAGAAAGAGTGGACGGACTGCGTGGCAG
ATGATCTTCGGCTATTTGGCGTCACGGGGGACTGGAAAACCGCC
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