mRNA_A-nodosum_M_contig1121.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1121.2.1
Unique NamemRNA_A-nodosum_M_contig1121.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1121.2.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.210e-56
Identity = 145/421 (34.44%), Postives = 211/421 (50.12%), Query Frame = 1
Query:  205 RWISDSGATENMTPDPTGFERYETAPPGRTVEMGDGTLLPVAGYGDLRLKIEQDDADGGQTRDLVLRRAAHVPGLRHNLLSAAQL-------SATFEHPMQLWPRAAVFRCPRDGQSVIFRKSAQRLFEVTARRSAIIDQASAKALVVAKP--TTCDIMMFHQLVGHPGEDITRRTAQVAGMRLTEKWNACEKCSEARVMRHAVPKSTETRADKRAGRIFIGLSGPLHGESLTGSRFAMLCVDDFSRYKIVAFMAKKSDATAVLRAIIARYFAS-AGLNIGVIRTDNGGEF-QRAFPSLLAELGIKHERTPPYTPQYNGVAERTLGLLRDKTVALLLGVTE---GASK--RLWAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYWRVEKPAHKLASRGAKCILLG 1419
            R+++D+GAT +M  +  GF RYE     R V +  G   P+ GYGD+ + +   D     T DL+L+R AHVP L +NL+S   L           +H ++L          R G  V++      L+     R+      +A A   AK   T  DI  FH   GH  E + R TA+  G  L  +   C  CS A+ +   +P  T TRA K+  R+F+ LSG    +SL G  + ++  DD++R+  V F+  KSDA       +A   A+ A  ++ V+R+DNGGEF +  F  +  +  IK E TP ++P+YNGVAER LGL++D  +A  +       GA     LWAEA+A++C+  N   T S    K+PYEMWHG  P      PF     ++V++  HK   +  KC  LG
Sbjct:  368 RYVADTGATTHMFANSDGFVRYEEC--DRRVRVAAGETFPIVGYGDVTVTLSSRDG----TTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELEL---------ERGGGEVVYFPRCGNLYVQNGFRTHTEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKR-THKSEPKAQKCFYLG 772          
BLAST of mRNA_A-nodosum_M_contig1121.2.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.230e-56
Identity = 145/421 (34.44%), Postives = 211/421 (50.12%), Query Frame = 1
Query:  205 RWISDSGATENMTPDPTGFERYETAPPGRTVEMGDGTLLPVAGYGDLRLKIEQDDADGGQTRDLVLRRAAHVPGLRHNLLSAAQL-------SATFEHPMQLWPRAAVFRCPRDGQSVIFRKSAQRLFEVTARRSAIIDQASAKALVVAKP--TTCDIMMFHQLVGHPGEDITRRTAQVAGMRLTEKWNACEKCSEARVMRHAVPKSTETRADKRAGRIFIGLSGPLHGESLTGSRFAMLCVDDFSRYKIVAFMAKKSDATAVLRAIIARYFAS-AGLNIGVIRTDNGGEF-QRAFPSLLAELGIKHERTPPYTPQYNGVAERTLGLLRDKTVALLLGVTE---GASK--RLWAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYWRVEKPAHKLASRGAKCILLG 1419
            R+++D+GAT +M  +  GF RYE     R V +  G   P+ GYGD+ + +   D     T DL+L+R AHVP L +NL+S   L           +H ++L          R G  V++      L+     R+      +A A   AK   T  DI  FH   GH  E + R TA+  G  L  +   C  CS A+ +   +P  T TRA K+  R+F+ LSG    +SL G  + ++  DD++R+  V F+  KSDA       +A   A+ A  ++ V+R+DNGGEF +  F  +  +  IK E TP ++P+YNGVAER LGL++D  +A  +       GA     LWAEA+A++C+  N   T S    K+PYEMWHG  P      PF     ++V++  HK   +  KC  LG
Sbjct:  381 RYVADTGATTHMFANSDGFVRYEEC--DRRVRVAAGETFPIVGYGDVTVTLSSRDG----TTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELEL---------ERGGGEVVYFPRCGNLYVQNGFRTHTEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKR-THKSEPKAQKCFYLG 785          
BLAST of mRNA_A-nodosum_M_contig1121.2.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.250e-56
Identity = 145/421 (34.44%), Postives = 211/421 (50.12%), Query Frame = 1
Query:  205 RWISDSGATENMTPDPTGFERYETAPPGRTVEMGDGTLLPVAGYGDLRLKIEQDDADGGQTRDLVLRRAAHVPGLRHNLLSAAQL-------SATFEHPMQLWPRAAVFRCPRDGQSVIFRKSAQRLFEVTARRSAIIDQASAKALVVAKP--TTCDIMMFHQLVGHPGEDITRRTAQVAGMRLTEKWNACEKCSEARVMRHAVPKSTETRADKRAGRIFIGLSGPLHGESLTGSRFAMLCVDDFSRYKIVAFMAKKSDATAVLRAIIARYFAS-AGLNIGVIRTDNGGEF-QRAFPSLLAELGIKHERTPPYTPQYNGVAERTLGLLRDKTVALLLGVTE---GASK--RLWAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYWRVEKPAHKLASRGAKCILLG 1419
            R+++D+GAT +M  +  GF RYE     R V +  G   P+ GYGD+ + +   D     T DL+L+R AHVP L +NL+S   L           +H ++L          R G  V++      L+     R+      +A A   AK   T  DI  FH   GH  E + R TA+  G  L  +   C  CS A+ +   +P  T TRA K+  R+F+ LSG    +SL G  + ++  DD++R+  V F+  KSDA       +A   A+ A  ++ V+R+DNGGEF +  F  +  +  IK E TP ++P+YNGVAER LGL++D  +A  +       GA     LWAEA+A++C+  N   T S    K+PYEMWHG  P      PF     ++V++  HK   +  KC  LG
Sbjct:  524 RYVADTGATTHMFANSDGFVRYEEC--DRRVRVAAGETFPIVGYGDVTVTLSSRDG----TTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELEL---------ERGGGEVVYFPRCGNLYVQNGFRTHTEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKR-THKSEPKAQKCFYLG 928          
BLAST of mRNA_A-nodosum_M_contig1121.2.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 8.180e-54
Identity = 142/417 (34.05%), Postives = 209/417 (50.12%), Query Frame = 1
Query:  205 RWISDSGATENMTPDPTGFERYETAPPGRTVEMGDGTLLPVAGYGDLRLKIEQDDADGGQTRDLVLRRAAHVPGLRHNLLSAAQLSATFEHPMQLWP-RAAVFRCPRDGQSVIFRKSAQRLFEVTARRSAIIDQASAKALVVAKPTTCDIMM--FHQLVGHPGEDITRRTAQVAGMRLTEKWNACEKCSEARVMRHAVPKSTETRADKRAGRIFIGLSGPLHGESLTGSRFAMLCVDDFSRYKIVAFMAKKSDATAVLRAIIARYFAS-AGLNIGVIRTDNGGEF-QRAFPSLLAELGIKHERTPPYTPQYNGVAERTLGLLRDKTVA-------LLLGVTEGASKRLWAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYWRVEKPAHKLASRGAKCILLG 1419
            R ++D+GAT +M  +  GF RYE     R V +  G   P+ GYGD+ + +    +  G T DL+L+R AHVP L +NL+S   L++ F+   Q            R G   ++      L+     R+      +A A   AK ++  + +  FH   GH  E + R TA+  G  L  +   C  CS A+ +   +P  T TRA KR  R+F+ LSG    +SL G  + ++  D ++R+  V F+  KSDA       +A   A+ A  ++ V+R+DNGGEF +  F  +  +  IK E TP ++P+YNGVAER LGL++D  +A       L  G     S   WAEA+A+AC+  N   T S    K+PYEMWHG  P      PF     ++V++  HK   +  KC  LG
Sbjct:  394 RCVADTGATTHMFANSDGFVRYEEC--DRRVRVAAGETFPIVGYGDVTVTL----SSRGGTTDLLLKRVAHVPRLDYNLVS---LTSLFDDGFQTKTLNKHELELERGGGESVYSPRCGNLYVHNGCRTHTEHAYTAIAPGDAKASSAPVEINDFHYAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPS--FWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKR-THKSEPKAQKCFYLG 798          
BLAST of mRNA_A-nodosum_M_contig1121.2.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.950e-44
Identity = 103/280 (36.79%), Postives = 152/280 (54.29%), Query Frame = 1
Query:  616 ALVVAKP---TTCDIMMFHQLVGHPGEDITRRTAQVAGMRLTEKWNACEKCSEARVMRHAVPKSTETRADKRAGRIFIGLSGPLHGESLTGSRFAMLCVDDFSRYKIVAFMAKKSDATAVLRAIIARYFASAGLN-IGVIRTDNGGEFQRA-FPSLLAELGIKHERTPPYTPQYNGVAERTLGLLRDKTVA------LLLG-VTEGASKRLWAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYWRVEKPAHKLASRGAKCILLG 1419
            AL  A P   TT DI  FH +  H  E + R TA+  G +L    +AC  CS ++ +R  + + T+ R+DK+ GR+F  L G     S+ G  + ++  DDF+R+  + F+  KSDA +  R  +A   A+   + + ++R+DNGG+F    F S+  EL IK E TP Y+PQYNGVAER LGL+ +  +A      +L G V    + +LWAEAM +AC+  N     +     +PYEMW+G  P      PF    Y R ++P+ KL  +G  C  +G
Sbjct:   20 ALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVG 297          
BLAST of mRNA_A-nodosum_M_contig1121.2.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 5.250e-42
Identity = 104/280 (37.14%), Postives = 150/280 (53.57%), Query Frame = 1
Query:  616 ALVVAKP---TTCDIMMFHQLVGHPGEDITRRTAQVAGMRLTEKWNACEKCSEARVMRHAVPKSTETRADKRAGRIFIGLSGPLHGESLTGSRFAMLCVDDFSRYKIVAFMAKKSDATAVLRAIIARYFASAGLN-IGVIRTDNGGEFQRA-FPSLLAELGIKHERTPPYTPQYNGVAERTLGLLRDKTVA------LLLG-VTEGASKRLWAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYWRVEKPAHKLASRGAKCILLG 1419
            AL  A P   TT DI  FH +  H  E + R TA+  G +L    +AC  CS ++ +R  + + T+ R+DK+ GR+F+ L G     S+ G  + M+  DDF+R   + F+  +SDA    R  +A   A+   + + ++R+DNGGEF    F S+  EL IK E TP Y+PQYNGVAER LGL+ +  +A      +L G V    + +LWAEAM +AC+  N     +     +PYEMW+G  P      PF    Y R ++P  KL  +G  C  +G
Sbjct:  240 ALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 517          
BLAST of mRNA_A-nodosum_M_contig1121.2.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 5.280e-42
Identity = 105/280 (37.50%), Postives = 150/280 (53.57%), Query Frame = 1
Query:  616 ALVVAKP---TTCDIMMFHQLVGHPGEDITRRTAQVAGMRLTEKWNACEKCSEARVMRHAVPKSTETRADKRAGRIFIGLSGPLHGESLTGSRFAMLCVDDFSRYKIVAFMAKKSDATAVLRAIIARYFASAGLN-IGVIRTDNGGEFQRA-FPSLLAELGIKHERTPPYTPQYNGVAERTLGLLRDKTVA------LLLG-VTEGASKRLWAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYWRVEKPAHKLASRGAKCILLG 1419
            AL  A P   TT DI  FH +  H  E + R TA+  G +L    +AC  CS ++ +R  + + T+ R+DK+ GR+F+ L G     S+ G  + M+  DDF+R   + F+  KSDA +  R  +A   A+   + + ++R+DNGGEF    F S+  EL IK E TP Y+PQYNGVAER LGL+ +  +A      +L G V    + +LWAEAM +AC+  N     +      PYEMW+G  P      PF    Y R ++P  KL  +G  C  +G
Sbjct:  118 ALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 395          
BLAST of mRNA_A-nodosum_M_contig1121.2.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 7.200e-42
Identity = 101/267 (37.83%), Postives = 146/267 (54.68%), Query Frame = 1
Query:  646 DIMMFHQLVGHPGEDITRRTAQVAGMRLTEKWNACEKCSEARVMRHAVPKSTETRADKRAGRIFIGLSGPLHGESLTGSRFAMLCVDDFSRYKIVAFMAKKSDATAVLRAIIARYFASAGLN-IGVIRTDNGGEFQRA-FPSLLAELGIKHERTPPYTPQYNGVAERTLGLLRDKTVA------LLLG-VTEGASKRLWAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYWRVEKPAHKLASRGAKCILLG 1419
            D+  FH +  H  E + R TA+  G+ LT K +AC  CS ++  +  +   T+ R+DK+ GR+F+ L G     S+ G  + M+  DDF+R   + F+  KSDA +  R+ +A   A    + + ++R+DNGGEF    F S+  EL IK E TP Y+PQYNGVAER LGL+    +A      +L G V    + RLWAEAM +AC+  N     +    K+PYEMWHG   +     PF    Y R ++P+ KL  +G  C  +G
Sbjct:  571 DVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA-SHARPYPFLKPAYCRWQRPS-KLLPKGEACFYVG 835          
BLAST of mRNA_A-nodosum_M_contig1121.2.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.360e-41
Identity = 105/280 (37.50%), Postives = 150/280 (53.57%), Query Frame = 1
Query:  616 ALVVAKP---TTCDIMMFHQLVGHPGEDITRRTAQVAGMRLTEKWNACEKCSEARVMRHAVPKSTETRADKRAGRIFIGLSGPLHGESLTGSRFAMLCVDDFSRYKIVAFMAKKSDATAVLRAIIARYFASAGLN-IGVIRTDNGGEFQRA-FPSLLAELGIKHERTPPYTPQYNGVAERTLGLLRDKTVA------LLLG-VTEGASKRLWAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYWRVEKPAHKLASRGAKCILLG 1419
            AL  A P   TT DI  FH +  H  E + R TA+  G +L    +AC  CS ++ +R  +   T+ R+DK+ GR+F+ L G     S+ G  + M+  DDF+R   + F+  KSDA +  R  +A   A+   + + ++R+DNGGEF    F S+  EL IK E TP Y+PQYNGVAER LGL+ +  +A      +L G V    + +LWAEAM +AC+  N     +     +PYEMW+G  P      PF    Y R ++P  KL  +G  C  +G
Sbjct:  173 ALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 450          
BLAST of mRNA_A-nodosum_M_contig1121.2.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 6.190e-41
Identity = 131/424 (30.90%), Postives = 203/424 (47.88%), Query Frame = 1
Query:  202 ERWISDSGATENMTPDPTGFERYETAPPGRTVEMGDGTLLPVAGYGDLRLKIEQDDADGGQTRDLVLRRAAHVPGLRHNLLSAAQLSATFEHPMQLWPRAAVFRCPRDGQSVIFRKSA--QRLFEVTARRSAIIDQASA----KALVVAKP---TTCDIMMFHQLVGHPGEDITRRTAQVAGMRLTEKWNACEKCSEARVMRHAVPKSTETRADKRAGRIFIGLSGPLHGESLTGSRFAMLCVDDFSRYKIVAFMAKKSDATAVLRAIIARYFASAGLN-IGVIRTDNGGEFQRA-FPSLLAELGIKHERTPPYTPQYNGVAERTLGLLRDKTVA------LLLG-VTEGASKRLWAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYWRVEKPAHKLASRGAKCILLG 1419
            E W +D+G   +MT      +  +  P  ++V    G    ++  G L L     D++      + L+   + P L +NL S    SA F+   + W          DG    F+     Q    +    +  + +AS      AL  + P   TT D+  FH +  H  + + R TA+  G  L  + + C  CS A+ ++  + + T++R+DK+ GR+F+ L G     S+ G  + M+  DDF+R   + F+  KSDA    R+ +A   A    + + ++R+DNGGEF    F S+  EL IK E TP Y+PQYNGVAER LGL+ +  +A      +L G V    + +LWAEAM +AC+  N     +    K+PYEMW+G  P      PF    Y R ++P+ KL  +G  C  +G
Sbjct:  523 EDWYADTGTAFHMTDSLACMK--DLKPCHKSVNGIGGVSCEISFSGTLELVFVTADSEFS----MELKNVLYSPNLGYNLFSP---SAEFDG--ESWNGLG----GPDGVMTAFKGQVTFQNFDGMLIASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 929          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1121.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZQ8_9PHAE1.210e-5634.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.230e-5634.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.250e-5634.44Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JXF7_9PHAE8.180e-5434.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVR5_9PHAE2.950e-4436.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE5.250e-4237.14Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L3Y0_9PHAE5.280e-4237.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE7.200e-4237.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE1.360e-4137.50Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JBA7_9PHAE6.190e-4130.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1121contigA-nodosum_M_contig1121:145251..146675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo132874
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1425
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.39e-41
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales
DescriptionGAG-pre-integrase domain
Cds size1425
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866521.08138-CDS-A-nodosum_M_contig1121:145250..1466751680866521.08138-CDS-A-nodosum_M_contig1121:145250..146675Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1121 145251..146675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1121.2.1prot_A-nodosum_M_contig1121.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1121 145251..146675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1121.2.1

>prot_A-nodosum_M_contig1121.2.1 ID=prot_A-nodosum_M_contig1121.2.1|Name=mRNA_A-nodosum_M_contig1121.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=475bp
KLHRLKCYYCEGPHIQAFCPEKSKDAPRPTTGEKKGGGMLATTRVDKPVG
AGLWACDDTDATVSGSGERWISDSGATENMTPDPTGFERYETAPPGRTVE
MGDGTLLPVAGYGDLRLKIEQDDADGGQTRDLVLRRAAHVPGLRHNLLSA
AQLSATFEHPMQLWPRAAVFRCPRDGQSVIFRKSAQRLFEVTARRSAIID
QASAKALVVAKPTTCDIMMFHQLVGHPGEDITRRTAQVAGMRLTEKWNAC
EKCSEARVMRHAVPKSTETRADKRAGRIFIGLSGPLHGESLTGSRFAMLC
VDDFSRYKIVAFMAKKSDATAVLRAIIARYFASAGLNIGVIRTDNGGEFQ
RAFPSLLAELGIKHERTPPYTPQYNGVAERTLGLLRDKTVALLLGVTEGA
SKRLWAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTV
GYWRVEKPAHKLASRGAKCILLGTA
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mRNA from alignment at A-nodosum_M_contig1121:145251..146675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1121.2.1 ID=mRNA_A-nodosum_M_contig1121.2.1|Name=mRNA_A-nodosum_M_contig1121.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1425bp|location=Sequence derived from alignment at A-nodosum_M_contig1121:145251..146675+ (Ascophyllum nodosum dioecious)
AAGTTGCACCGCCTGAAATGTTATTACTGCGAAGGTCCTCACATACAGGC ATTCTGCCCGGAGAAGTCAAAGGACGCGCCGAGGCCTACCACCGGAGAAA AGAAAGGAGGTGGGATGCTTGCTACAACACGCGTGGATAAGCCCGTTGGA GCCGGTCTGTGGGCGTGCGACGACACGGACGCGACGGTGAGCGGAAGCGG CGAGCGTTGGATCAGCGACAGTGGAGCGACGGAGAACATGACACCGGACC CCACTGGTTTCGAAAGATACGAGACTGCACCCCCGGGGCGCACAGTAGAG ATGGGCGACGGGACGCTCCTGCCGGTGGCCGGCTACGGAGACCTTCGTCT GAAAATAGAACAGGACGACGCGGACGGTGGCCAGACGCGCGATCTTGTGC TCAGGCGCGCGGCACACGTGCCGGGCCTTAGACACAACCTGCTCTCGGCG GCGCAACTGTCGGCGACGTTCGAGCATCCGATGCAGCTGTGGCCACGGGC CGCTGTCTTTAGGTGCCCGCGCGACGGACAGTCTGTGATTTTCAGAAAAT CCGCGCAGCGCTTGTTTGAGGTGACGGCACGCCGGAGCGCAATTATCGAT CAGGCCTCAGCAAAGGCGCTGGTGGTGGCTAAACCAACGACCTGTGACAT CATGATGTTCCATCAACTGGTTGGCCACCCTGGGGAGGACATCACGCGTC GAACAGCCCAGGTTGCAGGAATGCGGCTGACTGAAAAGTGGAATGCGTGC GAAAAGTGCTCCGAGGCGCGGGTCATGAGGCATGCAGTACCCAAGTCTAC AGAGACTCGGGCGGACAAGCGTGCCGGGAGAATATTCATTGGCCTGAGCG GACCATTGCACGGGGAGAGCTTGACGGGGAGCCGGTTCGCGATGTTGTGC GTGGATGACTTCTCGCGGTACAAGATTGTCGCGTTCATGGCCAAAAAGAG TGACGCCACGGCGGTACTTAGGGCGATCATCGCCAGGTACTTCGCGTCCG CCGGACTAAATATTGGCGTCATCCGGACTGACAACGGCGGGGAGTTCCAA AGGGCATTTCCGTCACTCCTCGCCGAGCTGGGCATCAAACACGAGCGCAC CCCGCCGTATACGCCCCAGTATAACGGGGTAGCGGAGCGGACCCTGGGTC TTCTTCGTGATAAGACCGTCGCCCTGCTACTTGGAGTGACGGAGGGTGCG AGCAAACGTCTCTGGGCGGAAGCGATGGCCTACGCCTGCGATATGTCCAA CAAGTGCGTCACCGATTCGCTCGATCACGACAAGACACCGTACGAGATGT GGCATGGTCGACTACCCGCGTTCGACACCCTGTTACCGTTCGGTACCGTG GGCTACTGGCGCGTGGAAAAGCCGGCGCACAAGCTGGCTTCACGCGGGGC CAAGTGCATTCTTCTAGGTACTGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1121:145251..146675+

>mRNA_A-nodosum_M_contig1121.2.1 ID=mRNA_A-nodosum_M_contig1121.2.1|Name=mRNA_A-nodosum_M_contig1121.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1425bp|location=Sequence derived from alignment at A-nodosum_M_contig1121:145251..146675+ (Ascophyllum nodosum dioecious)
AAGTTGCACCGCCTGAAATGTTATTACTGCGAAGGTCCTCACATACAGGC
ATTCTGCCCGGAGAAGTCAAAGGACGCGCCGAGGCCTACCACCGGAGAAA
AGAAAGGAGGTGGGATGCTTGCTACAACACGCGTGGATAAGCCCGTTGGA
GCCGGTCTGTGGGCGTGCGACGACACGGACGCGACGGTGAGCGGAAGCGG
CGAGCGTTGGATCAGCGACAGTGGAGCGACGGAGAACATGACACCGGACC
CCACTGGTTTCGAAAGATACGAGACTGCACCCCCGGGGCGCACAGTAGAG
ATGGGCGACGGGACGCTCCTGCCGGTGGCCGGCTACGGAGACCTTCGTCT
GAAAATAGAACAGGACGACGCGGACGGTGGCCAGACGCGCGATCTTGTGC
TCAGGCGCGCGGCACACGTGCCGGGCCTTAGACACAACCTGCTCTCGGCG
GCGCAACTGTCGGCGACGTTCGAGCATCCGATGCAGCTGTGGCCACGGGC
CGCTGTCTTTAGGTGCCCGCGCGACGGACAGTCTGTGATTTTCAGAAAAT
CCGCGCAGCGCTTGTTTGAGGTGACGGCACGCCGGAGCGCAATTATCGAT
CAGGCCTCAGCAAAGGCGCTGGTGGTGGCTAAACCAACGACCTGTGACAT
CATGATGTTCCATCAACTGGTTGGCCACCCTGGGGAGGACATCACGCGTC
GAACAGCCCAGGTTGCAGGAATGCGGCTGACTGAAAAGTGGAATGCGTGC
GAAAAGTGCTCCGAGGCGCGGGTCATGAGGCATGCAGTACCCAAGTCTAC
AGAGACTCGGGCGGACAAGCGTGCCGGGAGAATATTCATTGGCCTGAGCG
GACCATTGCACGGGGAGAGCTTGACGGGGAGCCGGTTCGCGATGTTGTGC
GTGGATGACTTCTCGCGGTACAAGATTGTCGCGTTCATGGCCAAAAAGAG
TGACGCCACGGCGGTACTTAGGGCGATCATCGCCAGGTACTTCGCGTCCG
CCGGACTAAATATTGGCGTCATCCGGACTGACAACGGCGGGGAGTTCCAA
AGGGCATTTCCGTCACTCCTCGCCGAGCTGGGCATCAAACACGAGCGCAC
CCCGCCGTATACGCCCCAGTATAACGGGGTAGCGGAGCGGACCCTGGGTC
TTCTTCGTGATAAGACCGTCGCCCTGCTACTTGGAGTGACGGAGGGTGCG
AGCAAACGTCTCTGGGCGGAAGCGATGGCCTACGCCTGCGATATGTCCAA
CAAGTGCGTCACCGATTCGCTCGATCACGACAAGACACCGTACGAGATGT
GGCATGGTCGACTACCCGCGTTCGACACCCTGTTACCGTTCGGTACCGTG
GGCTACTGGCGCGTGGAAAAGCCGGCGCACAAGCTGGCTTCACGCGGGGC
CAAGTGCATTCTTCTAGGTACTGCC
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