mRNA_A-nodosum_M_contig1115.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1115.7.1
Unique NamemRNA_A-nodosum_M_contig1115.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1115.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1115contigA-nodosum_M_contig1115:104529..105284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size228
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866510.0918329-UTR-A-nodosum_M_contig1115:104528..1045341680866510.0918329-UTR-A-nodosum_M_contig1115:104528..104534Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1115 104529..104534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866510.15953-CDS-A-nodosum_M_contig1115:104534..1046071680866510.15953-CDS-A-nodosum_M_contig1115:104534..104607Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1115 104535..104607 +
1680866510.1797838-CDS-A-nodosum_M_contig1115:105135..1052841680866510.1797838-CDS-A-nodosum_M_contig1115:105135..105284Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1115 105136..105284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1115.7.1prot_A-nodosum_M_contig1115.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1115 104535..105284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1115.7.1

>prot_A-nodosum_M_contig1115.7.1 ID=prot_A-nodosum_M_contig1115.7.1|Name=mRNA_A-nodosum_M_contig1115.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=74bp
MEGNSPEHGTAQRPEAGASSEHETGSAAAERTTHSHVWWGYGNARKIKNA
AVWKAPRLTSSVLNSKDSGRREG*
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mRNA from alignment at A-nodosum_M_contig1115:104529..105284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1115.7.1 ID=mRNA_A-nodosum_M_contig1115.7.1|Name=mRNA_A-nodosum_M_contig1115.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=756bp|location=Sequence derived from alignment at A-nodosum_M_contig1115:104529..105284+ (Ascophyllum nodosum dioecious)
GCGGAGATGGAGGGTAACAGTCCGGAGCATGGCACTGCGCAGCGTCCTGA
GGCCGGGGCGTCATCCGAGCACGAAACAGGTGAGAGACACCATGTGTGTG
TTTGTGTGTCCCCCCTTGGTGATAATAAGGGGAATCCTGCTTTTGCTATA
TAATGGGGACAGGGTTTGAGCATAGTAGATGTGAACTACGTAACTCTCCA
GGAGGCCCACTTGGCCTCAAAGGAGATCTTTCCATCCAAAAGTTACTGTT
TTTTTTTTGTTTTGTTTTTTTCTTGCAACGTGACGCGGCAGAGCGCGGCC
TACGGTTACAGTGTGTACTAGTTTGGTTGTCGCGAAAGTCTAAAAAAGAG
GGGGATTTGTCCGTCCGTCCCCGGGGCGTGTGTTATACACCCTTGATACT
GTAGACAGCTACACTTTGTTTACAATTGTACCTTTATGATGGGGTATCCT
GTTTAAACGTTCAATGAGTGCAGTGTTATCATATCACCACCTCGCAATAC
TGGTACAAAATGTTTTATAGTATCACCCTGTAATGTGACGCAGTCTCGTG
TTGTGTGTGAAGTATTACAGTTAGTAACGGTCATGCCTTGTATTGTTCTA
AGGTAAGGCAGCGCTGCGGCCGAGCGCACCACACACAGCCATGTGTGGTG
GGGGTATGGAAACGCGCGCAAGATCAAAAATGCGGCTGTTTGGAAAGCAC
CGCGCCTTACGTCTTCCGTGCTGAACTCAAAAGACTCCGGGAGACGTGAA
GGTTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1115:104529..105284+

>mRNA_A-nodosum_M_contig1115.7.1 ID=mRNA_A-nodosum_M_contig1115.7.1|Name=mRNA_A-nodosum_M_contig1115.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at A-nodosum_M_contig1115:104529..105284+ (Ascophyllum nodosum dioecious)
ATGGAGGGTAACAGTCCGGAGCATGGCACTGCGCAGCGTCCTGAGGCCGG
GGCGTCATCCGAGCACGAAACAGGCAGCGCTGCGGCCGAGCGCACCACAC
ACAGCCATGTGTGGTGGGGGTATGGAAACGCGCGCAAGATCAAAAATGCG
GCTGTTTGGAAAGCACCGCGCCTTACGTCTTCCGTGCTGAACTCAAAAGA
CTCCGGGAGACGTGAAGGTTAG
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