mRNA_A-nodosum_M_contig11135.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11135.8.1
Unique NamemRNA_A-nodosum_M_contig11135.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11135.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11135contigA-nodosum_M_contig11135:11275..12557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJV8
PFAMsPkinase
Model size614
Max annot lvl2759|Eukaryota
KEGG koko:K06641,ko:K08794
KEGG Pathwayko04110,ko04111,ko04115,ko04218,ko04921,ko04925,ko05166,map04110,map04111,map04115,map04218,map04921,map04925,map05166
KEGG ModuleM00691
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.19e-14
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.1,2.7.11.17
Descriptionprotein serine/threonine kinase activity
Cds size612
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866509.514998-CDS-A-nodosum_M_contig11135:11276..113361680866509.514998-CDS-A-nodosum_M_contig11135:11276..11336Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11135 11277..11336 -
1680866509.5265613-CDS-A-nodosum_M_contig11135:11646..117321680866509.5265613-CDS-A-nodosum_M_contig11135:11646..11732Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11135 11647..11732 -
1680866509.5367718-CDS-A-nodosum_M_contig11135:12091..125571680866509.5367718-CDS-A-nodosum_M_contig11135:12091..12557Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11135 12092..12557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11135.8.1prot_A-nodosum_M_contig11135.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11135 11277..12557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11135.8.1

>prot_A-nodosum_M_contig11135.8.1 ID=prot_A-nodosum_M_contig11135.8.1|Name=mRNA_A-nodosum_M_contig11135.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=204bp
SRRRSHRVDAIRQILSLARDAQSSVKHALAKRFAKLQKPGAALCSLPIVL
AALEDLVAPQRLSDKPAARSSETGSIASFAACTTGRSTANSATDSSGSAA
FISLRLLEGEELLQSSRIPSSIVEVGDGVTRKWSFQDLASNTEAHVAKII
GGGCFAQVACTTLANGAKLAIKEMTNWHPTLQSHTEEYIAREIKMLEDCS
VHPY
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mRNA from alignment at A-nodosum_M_contig11135:11275..12557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11135.8.1 ID=mRNA_A-nodosum_M_contig11135.8.1|Name=mRNA_A-nodosum_M_contig11135.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1283bp|location=Sequence derived from alignment at A-nodosum_M_contig11135:11275..12557- (Ascophyllum nodosum dioecious)
TCCCGACGCCGGTCGCATCGGGTGGATGCGATCAGACAGATTTTGAGCCT
TGCGCGAGACGCGCAGAGTTCGGTAAAACATGCTTTGGCGAAGCGGTTCG
CCAAGTTGCAAAAGCCAGGCGCAGCACTCTGTTCTTTACCGATTGTACTT
GCGGCATTGGAGGACCTTGTAGCGCCGCAGCGTTTGAGTGACAAGCCGGC
TGCTAGGAGCAGTGAAACCGGCAGCATCGCTAGCTTCGCCGCTTGCACCA
CCGGACGCAGCACCGCCAACAGTGCCACCGACAGCTCAGGCTCTGCCGCA
TTTATTTCTCTCAGGCTCTTGGAGGGTGAAGAGCTCTTACAGTCCTCACG
CATACCTTCTTCGATCGTCGAGGTTGGCGACGGGGTCACGCGTAAGTGGT
CCTTCCAAGACCTGGCCTCAAACACCGAGGCTCATGTTGCGAAGATCATT
GGCGGTGGTTGTTTCGGTGAGATTATATACTACTATACTACAGTAGAATG
CGTAATACAGCGGCAAATGATACTTTACGGTTGTCGCTGGACAGCTGGAT
CGTGTGTTCTAGAACGATGTACTGCTTCAATGATCACAGGAAACTGATGC
CTTCGTCTTGTCCGTTTTTACCAGTTCACGATGGTTTCAAGTGCCAAATA
TCAATAAACGCAAACGTGAACCAAACATCATGCCAGAGGTTTCTGCGTGC
AGTTGGTGAAATACGCGGATTTCTCCCCTCCCTTGAGATCCAGAGTTATA
TAACGTATCGTTTTACCCGCTGTTTCTCGTTGTCTGCACCGTTGGTGCTG
CGCTGATCGCCGATTCGTGGAGCAGCTCAGGTCGCATGCACCACCCTAGC
GAACGGTGCCAAGCTGGCCATTAAGGAAATGACCAACTGGCACCCAACTC
TGCAATCGCATGTGAGACTCGATTGACTTCGCACCCACAGTCGTGGCGAG
AAAGGCTGAACTAACACTTCGAAGGGAGTCAACTATGGTGTTCTACACCT
GCAGGCAACCCTGTTTCAGAAACCACGTTCCGTGAAGTCCCAATATCGTT
TAACAGTGGGTACACCAACCAGTCTACGGTACCAATGCAGGCGACATGTT
TCAGCCCCAACCAAAAGAAGTGACTACGTGTGCGCTATTGTCTCGATTAC
GTGTCATTCATACTTCAAACGAGCATCGCCGCCGCTGTTATTGTTCGGAC
CTCTTGCCAACGACGTTGCAGACTGAAGAGTATATTGCAAGGGAGATAAA
AATGCTGGAAGACTGTTCCGTCCACCCCTATGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11135:11275..12557-

>mRNA_A-nodosum_M_contig11135.8.1 ID=mRNA_A-nodosum_M_contig11135.8.1|Name=mRNA_A-nodosum_M_contig11135.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at A-nodosum_M_contig11135:11275..12557- (Ascophyllum nodosum dioecious)
TCCCGACGCCGGTCGCATCGGGTGGATGCGATCAGACAGATTTTGAGCCT
TGCGCGAGACGCGCAGAGTTCGGTAAAACATGCTTTGGCGAAGCGGTTCG
CCAAGTTGCAAAAGCCAGGCGCAGCACTCTGTTCTTTACCGATTGTACTT
GCGGCATTGGAGGACCTTGTAGCGCCGCAGCGTTTGAGTGACAAGCCGGC
TGCTAGGAGCAGTGAAACCGGCAGCATCGCTAGCTTCGCCGCTTGCACCA
CCGGACGCAGCACCGCCAACAGTGCCACCGACAGCTCAGGCTCTGCCGCA
TTTATTTCTCTCAGGCTCTTGGAGGGTGAAGAGCTCTTACAGTCCTCACG
CATACCTTCTTCGATCGTCGAGGTTGGCGACGGGGTCACGCGTAAGTGGT
CCTTCCAAGACCTGGCCTCAAACACCGAGGCTCATGTTGCGAAGATCATT
GGCGGTGGTTGTTTCGCTCAGGTCGCATGCACCACCCTAGCGAACGGTGC
CAAGCTGGCCATTAAGGAAATGACCAACTGGCACCCAACTCTGCAATCGC
ATACTGAAGAGTATATTGCAAGGGAGATAAAAATGCTGGAAGACTGTTCC
GTCCACCCCTAT
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