mRNA_A-nodosum_M_contig11132.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11132.1.1
Unique NamemRNA_A-nodosum_M_contig11132.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11132.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11132contigA-nodosum_M_contig11132:11664..12392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size423
Hectar predicted targeting categoryother localisation
Exons3
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866509.1357954-UTR-A-nodosum_M_contig11132:11663..116921680866509.1357954-UTR-A-nodosum_M_contig11132:11663..11692Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11132 11664..11692 -
1680866509.1614814-UTR-A-nodosum_M_contig11132:12226..122401680866509.1614814-UTR-A-nodosum_M_contig11132:12226..12240Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11132 12227..12240 -
1680866509.1723454-UTR-A-nodosum_M_contig11132:12252..123921680866509.1723454-UTR-A-nodosum_M_contig11132:12252..12392Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11132 12253..12392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866509.1443346-CDS-A-nodosum_M_contig11132:11692..117671680866509.1443346-CDS-A-nodosum_M_contig11132:11692..11767Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11132 11693..11767 -
1680866509.1529622-CDS-A-nodosum_M_contig11132:12061..122261680866509.1529622-CDS-A-nodosum_M_contig11132:12061..12226Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11132 12062..12226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11132.1.1prot_A-nodosum_M_contig11132.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11132 11693..12226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11132.1.1

>prot_A-nodosum_M_contig11132.1.1 ID=prot_A-nodosum_M_contig11132.1.1|Name=mRNA_A-nodosum_M_contig11132.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp
MKDTTVYGGLHFGSRALIPCHWLDGIMHGENMFPTWSHVMKLFLSHSTTY
QQSTSECLGEDLGKKKCSSYCSLLYLFYP*
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mRNA from alignment at A-nodosum_M_contig11132:11664..12392-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11132.1.1 ID=mRNA_A-nodosum_M_contig11132.1.1|Name=mRNA_A-nodosum_M_contig11132.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=729bp|location=Sequence derived from alignment at A-nodosum_M_contig11132:11664..12392- (Ascophyllum nodosum dioecious)
GGGTCTGTTTAATGGTATTGAATGTTATTGAATGTTGAATATTGTGTTCG
GGAGAGTAAAATATCACTGAGCACTGCCAAGAGCTATGCGGCTGCACACG
CTTGTTTGTACCCACCCGATGTAGTGTGCTATACATACCAAATTACGAGT
AAGTTTTGTGCCCAGCATGAAGGACACTACTGTATATGGAGGCCTCCACT
TCGGTAGCCGCGCTCTCATTCCATGCCACTGGCTCGATGGCATCATGCAC
GGAGAGAATATGTTCCCCACTTGGTCTCATGTAATGAAGCTGTTTCTCAG
CCACAGTACGACGTACCAGCAGAGTACGAGTGTTCGGGGAGAGTAAAATA
TCACTGAAGCACTGCCAAGAGCCATGGGCTGCGCACGCTTGTTTGTTACC
ACCACGATGTAGTGTGCTACACATACCAAATTACGAGTAAGTTTTGTGCT
CCAGTATTAAGGATACACTACTGTATATGGAGGCCTCCACTTCGGTAGCC
GCGCTTCCCGTCCTGGCTTTTTCACCGTTTGATGGCATCATGCACGGAGA
GAATATGTTCCCCACTTGGTCTCATGTAATGAAGCTGCTTCTCAGCCACA
GTACGACGTACCAGCAGAGTACGAGGAATGCTTGGGCGAGGATCTCGGCA
AAAAAAAATGTTCTAGCTACTGTAGTCTATTGTATTTATTTTATCCTTGA
GTGTTCTCCGCCACTTATGGGAGCTGAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11132:11664..12392-

>mRNA_A-nodosum_M_contig11132.1.1 ID=mRNA_A-nodosum_M_contig11132.1.1|Name=mRNA_A-nodosum_M_contig11132.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig11132:11664..12392- (Ascophyllum nodosum dioecious)
ATGAAGGACACTACTGTATATGGAGGCCTCCACTTCGGTAGCCGCGCTCT
CATTCCATGCCACTGGCTCGATGGCATCATGCACGGAGAGAATATGTTCC
CCACTTGGTCTCATGTAATGAAGCTGTTTCTCAGCCACAGTACGACGTAC
CAGCAGAGTACGAGTGAATGCTTGGGCGAGGATCTCGGCAAAAAAAAATG
TTCTAGCTACTGTAGTCTATTGTATTTATTTTATCCTTGA
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