mRNA_A-nodosum_M_contig11108.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11108.3.1
Unique NamemRNA_A-nodosum_M_contig11108.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11108.3.1 vs. uniprot
Match: A0A6H5L5M8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M8_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 9.790e-28
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    4 SGRGATIYHAFATQGMIPTREFAAWICVEKKCSRVIGFVCNNFEGAILREKQNAKMRFEFPHQEGQTLAQMFGFIEVRN 240
            +GRGA+IYHA A QG +P R+ AAWICVEKKCS+VI F+   F GA++REKQNAKMRFEFP Q+ QTLAQMFG +EV N
Sbjct:  966 TGRGASIYHAIANQGGVPVRDLAAWICVEKKCSKVIAFMQQQFAGAVMREKQNAKMRFEFPPQKNQTLAQMFGVVEVFN 1044
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BLAST of mRNA_A-nodosum_M_contig11108.3.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 6.690e-27
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    4 SGRGATIYHAFATQGMIPTREFAAWICVEKKCSRVIGFVCNNFEGAILREKQNAKMRFEFPHQEGQTLAQMFGFIE 231
            +GRGA+IYHA A QG +  R+ AAWICVEKKCSRVI F+  +F GA LREKQNAKMRFEFP Q+ QTLAQMFGFIE
Sbjct: 1833 TGRGASIYHAIANQGGVSVRDLAAWICVEKKCSRVIAFMQQHFAGAALREKQNAKMRFEFPPQKNQTLAQMFGFIE 1908
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BLAST of mRNA_A-nodosum_M_contig11108.3.1 vs. uniprot
Match: D7FZE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.240e-26
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    4 SGRGATIYHAFATQGMIPTREFAAWICVEKKCSRVIGFVCNNFEGAILREKQNAKMRFEFPHQEGQTLAQMFGFIE 231
            +GRGA+IYHA A QG +P R+ AAWICVEKKCS+VI F+   F GA++REKQNAKMRFEFP Q+ QTLAQMFG +E
Sbjct: 1853 TGRGASIYHAIANQGGVPVRDLAAWICVEKKCSKVIAFMQQQFAGAVMREKQNAKMRFEFPPQKNQTLAQMFGVVE 1928
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BLAST of mRNA_A-nodosum_M_contig11108.3.1 vs. uniprot
Match: A0A6H5JVX0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX0_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.190e-22
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    7 GRGATIYHAFATQGMIPTREFAAWICVEKKCSRVIGFVCNNFEGAILREKQNAKMRFEFPHQEGQTLAQMFGFIE 231
            GRGA +YHA A +  +  R+FAAW+C+E+ CSRVI FV ++F+GA LREKQNAKMRFE P QE +TL  MFGFIE
Sbjct:  473 GRGAMVYHALANERTVLARDFAAWLCLEQSCSRVIAFVESSFKGARLREKQNAKMRFEIPQQEDKTLGAMFGFIE 547
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BLAST of mRNA_A-nodosum_M_contig11108.3.1 vs. uniprot
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA6_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.040e-22
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    7 GRGATIYHAFATQGMIPTREFAAWICVEKKCSRVIGFVCNNFEGAILREKQNAKMRFEFPHQEGQTLAQMFGFIE 231
            GRGA +YHA A +  +  R+FAAW+C+E+ CSRVI FV ++F+GA LREKQNAKMRFE P QE +TL  MFGFIE
Sbjct: 1854 GRGAMVYHALANERTVLARDFAAWLCLEQSCSRVIAFVESSFKGARLREKQNAKMRFEIPQQEDKTLGAMFGFIE 1928
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BLAST of mRNA_A-nodosum_M_contig11108.3.1 vs. uniprot
Match: A0A6H5KNW1_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW1_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.520e-20
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    4 SGRGATIYHAFATQGMIPTREFAAWICVEKKCSRVIGFVCNNFEGAILREKQNAKMRFEFPHQ 192
            +GRGA+IYHA A QG +P R+ AAWICVEKKCSRVI F+  +F G  LREKQNAKMRFEFP Q
Sbjct:  271 TGRGASIYHAIANQGGVPVRDLAAWICVEKKCSRVIAFMQEHFAGVALREKQNAKMRFEFPPQ 333
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BLAST of mRNA_A-nodosum_M_contig11108.3.1 vs. uniprot
Match: A0A7S3XYR3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYR3_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 6.790e-11
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:    1 ESGRGATIYHAFATQGMIPTREFAAWICVEKKCSRVIGFVCNNFEGAILREKQNAKMRFEFPHQEGQTLAQMFGFIEVRNS 243
            E+G GA +YH    +G +   +  A+   E++ ++   FV + F+GA+LREKQ+ K+RFE+P Q G  L +MFG +E R +
Sbjct: 1850 ETGAGALLYHELLARGGVALGDLVAFHARERRAAQAEAFVADTFKGAVLREKQSGKLRFEYPPQPGLALGEMFGALEDRRA 1930
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BLAST of mRNA_A-nodosum_M_contig11108.3.1 vs. uniprot
Match: A0A6V1S0H3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S0H3_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 9.750e-7
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:    4 SGRGATIYHAFATQGMIPTREFAAWICVEKKCSRVIGFVCNNFEGAILREKQNAKMRFEFPHQEGQT--LAQMFGFIE 231
            SG  AT+ H  A +G +   E AAW  ++ +   +  +V   FEGA+LRE+Q  + RFE PH+ G    +A MF  +E
Sbjct:  185 SGSAATLGHELAVKGAVSAEELAAWALLDGRVRALHAWVGRAFEGAVLRERQAGRARFEVPHRAGGRGGMAGMFAALE 262
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11108.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L5M8_9PHAE9.790e-2869.62ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FZE8_ECTSI6.690e-2773.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZE9_ECTSI1.240e-2669.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVX0_9PHAE2.190e-2264.00ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FZA6_ECTSI3.040e-2264.00ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ect... [more]
A0A6H5KNW1_9PHAE1.520e-2071.43ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S3XYR3_HETAK6.790e-1139.51Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6V1S0H3_HETAK9.750e-738.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11108contigA-nodosum_M_contig11108:9955..10980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZE8
PFAMsABC2_membrane_3,ABC_tran
Model size717
Max annot lvl2759|Eukaryota
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0099120
Exons2
Evalue2.26e-22
EggNOG OGsCOG1131@1|root,KOG0059@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size258
COG categoryV
BRITEko00000,ko00001,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866505.911007-UTR-A-nodosum_M_contig11108:9954..103651680866505.911007-UTR-A-nodosum_M_contig11108:9954..10365Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11108 9955..10365 -
1680866505.9512312-UTR-A-nodosum_M_contig11108:10932..109801680866505.9512312-UTR-A-nodosum_M_contig11108:10932..10980Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11108 10933..10980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866505.9283488-CDS-A-nodosum_M_contig11108:10365..105661680866505.9283488-CDS-A-nodosum_M_contig11108:10365..10566Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11108 10366..10566 -
1680866505.9386237-CDS-A-nodosum_M_contig11108:10875..109321680866505.9386237-CDS-A-nodosum_M_contig11108:10875..10932Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11108 10876..10932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11108.3.1prot_A-nodosum_M_contig11108.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11108 10366..10932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11108.3.1

>prot_A-nodosum_M_contig11108.3.1 ID=prot_A-nodosum_M_contig11108.3.1|Name=mRNA_A-nodosum_M_contig11108.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
MIPTREFAAWICVEKKCSRVIGFVCNNFEGAILREKQNAKMRFEFPHQEG
QTLAQMFGFIEVRNSGGMNLISCQFNNFFERQIQA*
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mRNA from alignment at A-nodosum_M_contig11108:9955..10980-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11108.3.1 ID=mRNA_A-nodosum_M_contig11108.3.1|Name=mRNA_A-nodosum_M_contig11108.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1026bp|location=Sequence derived from alignment at A-nodosum_M_contig11108:9955..10980- (Ascophyllum nodosum dioecious)
GAGAGCGGACGGGGAGCAACCATCTACCACGCTTTCGCCACCCAGGGCAT
GATCCCCACTAGGGAGTTTGCGGCGTGGATCTGCGTTGAGAAGAAATGCT
CTAGGGTGAGAGTCTTGAGATCGTGGGGAAATTTGTGTGTAAAGAAATGA
TGAATTTCGTGTAATGTTCGTAATACTTCACAGCGGTACTCGGAGGTTGT
TACGGTAGTTGTTGTTGAAGCAGTCACGCGCTGTTTCGTACAGATCTTGC
CCGCGTAGTAAGAAAAATCGTTGCTAATCCCATTGCAGAAAATCATGTGT
GGCGAATAAAACAATTTTTATACCTTGAGATTAAATGTCATCATTGTCTT
GTTCCGTTTAATTGTTTTCTTTTATTTCATGTACCCGCCATTTGCGTGCC
GTGCGTATCAAAAGGTGATCGGTTTCGTCTGCAATAACTTTGAGGGCGCG
ATACTCCGGGAAAAGCAGAACGCCAAGATGCGGTTTGAGTTTCCCCATCA
AGAAGGCCAGACCCTTGCGCAGATGTTCGGCTTTATCGAGGTGAGGAACT
CCGGCGGCATGAATCTCATTTCCTGTCAGTTTAATAATTTTTTTGAGCGG
CAGATTCAGGCATAATCTCTATTGCAAGTCTTTCAAGTTTGATTTTCGTT
ATCATCAGACCCTCACCCGGTAAAAACAAAAACTGTGCTTTGTTCACGAC
AAAACGCGCGTAGTAAAGTTTGGAAAGGGGAACTGTCGGAAAGCGTGGGG
GAAAGTAAAAATGCGTTTCAGCTACAATTTCGCCTCGAGTGCAAGTCGTT
TAGTTTTGTCGATCAGTTTTCGTTTCGGTTTTTCGTTTCGGTTTCATTTC
GCGATGTGAAGAGTGGTCATCTCGTTGATAGTGTTCGAGCCTATAACGTT
AGGGCGATGCCTGAAACGAGAAGAAACGTTTCTCACCGTTAGTCTGGCCA
TCCGCCGTACCAGCATCGTGACGCGATTTGTTTCCGACCGCAACCGTTCG
TCGTTTCGCGCGAACACCGAAAAGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11108:9955..10980-

>mRNA_A-nodosum_M_contig11108.3.1 ID=mRNA_A-nodosum_M_contig11108.3.1|Name=mRNA_A-nodosum_M_contig11108.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig11108:9955..10980- (Ascophyllum nodosum dioecious)
ATGATCCCCACTAGGGAGTTTGCGGCGTGGATCTGCGTTGAGAAGAAATG
CTCTAGGGTGATCGGTTTCGTCTGCAATAACTTTGAGGGCGCGATACTCC
GGGAAAAGCAGAACGCCAAGATGCGGTTTGAGTTTCCCCATCAAGAAGGC
CAGACCCTTGCGCAGATGTTCGGCTTTATCGAGGTGAGGAACTCCGGCGG
CATGAATCTCATTTCCTGTCAGTTTAATAATTTTTTTGAGCGGCAGATTC
AGGCATAA
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