mRNA_A-nodosum_M_contig1110.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1110.6.1
Unique NamemRNA_A-nodosum_M_contig1110.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1110.6.1 vs. uniprot
Match: D7FMC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC6_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.130e-44
Identity = 81/114 (71.05%), Postives = 96/114 (84.21%), Query Frame = 2 
Query:  269 SRPLQDAQDFLAEGIFRSLLGGVTEIIATTDGLAKTQDALLATSQALLEELRLHDTAHQADVINGRVEKIRETSAALSRIAGRLAALRRRADILEADLEADGCVAGNNMGELRL 610
            +R L+DA+D LAEGIFRSL+GGVT++IATTD LA+TQD LLATS+ LLEELRLHDTA QAD I  R +KIR+T AAL R+  RLAALRRRA +LEA+LEADGCVAG+ + EL L
Sbjct:    4 ARSLEDAEDMLAEGIFRSLIGGVTDMIATTDRLARTQDDLLATSRGLLEELRLHDTARQADAIEARADKIRQTCAALERVTDRLAALRRRAQVLEAELEADGCVAGDGVSELCL 117
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BLAST of mRNA_A-nodosum_M_contig1110.6.1 vs. uniprot
Match: A0A6H5J974_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J974_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.840e-38
Identity = 72/102 (70.59%), Postives = 86/102 (84.31%), Query Frame = 2 
Query:  305 EGIFRSLLGGVTEIIATTDGLAKTQDALLATSQALLEELRLHDTAHQADVINGRVEKIRETSAALSRIAGRLAALRRRADILEADLEADGCVAGNNMGELRL 610
            +GIFRSL+GGVT++IATTD LA+TQD LLATS+ LLEELRLHDTA QAD I  R +KIR+T AAL R+  RLAALRRRA +LEA+LEADGCVAG+ + +L L
Sbjct:   10 QGIFRSLIGGVTDMIATTDSLAQTQDDLLATSRGLLEELRLHDTARQADAIETRADKIRQTCAALERVTDRLAALRRRAQVLEAELEADGCVAGDGVSDLCL 111
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1110.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMC6_ECTSI1.130e-4471.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J974_9PHAE3.840e-3870.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1110contigA-nodosum_M_contig1110:69791..73800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size841
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003470.1
Cds size351
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1110.6.1prot_A-nodosum_M_contig1110.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1110 70053..73572 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866503.757985-UTR-A-nodosum_M_contig1110:69790..700521680866503.757985-UTR-A-nodosum_M_contig1110:69790..70052Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1110 69791..70052 +
1680866503.8064206-UTR-A-nodosum_M_contig1110:73572..738001680866503.8064206-UTR-A-nodosum_M_contig1110:73572..73800Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1110 73573..73800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866503.7685735-CDS-A-nodosum_M_contig1110:70052..700971680866503.7685735-CDS-A-nodosum_M_contig1110:70052..70097Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1110 70053..70097 +
1680866503.7764566-CDS-A-nodosum_M_contig1110:71069..711781680866503.7764566-CDS-A-nodosum_M_contig1110:71069..71178Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1110 71070..71178 +
1680866503.7888649-CDS-A-nodosum_M_contig1110:73029..730881680866503.7888649-CDS-A-nodosum_M_contig1110:73029..73088Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1110 73030..73088 +
1680866503.7979484-CDS-A-nodosum_M_contig1110:73434..735721680866503.7979484-CDS-A-nodosum_M_contig1110:73434..73572Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1110 73435..73572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1110.6.1

>prot_A-nodosum_M_contig1110.6.1 ID=prot_A-nodosum_M_contig1110.6.1|Name=mRNA_A-nodosum_M_contig1110.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=117bp
MSSRPLQDAQDFLAEGIFRSLLGGVTEIIATTDGLAKTQDALLATSQALL
EELRLHDTAHQADVINGRVEKIRETSAALSRIAGRLAALRRRADILEADL
EADGCVAGNNMGELRL*
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mRNA from alignment at A-nodosum_M_contig1110:69791..73800+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1110.6.1 ID=mRNA_A-nodosum_M_contig1110.6.1|Name=mRNA_A-nodosum_M_contig1110.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4010bp|location=Sequence derived from alignment at A-nodosum_M_contig1110:69791..73800+ (Ascophyllum nodosum dioecious)
ACTGTGTAATGATAAGGAGGAGTTGTGCAGCTGGCGTATACTGGCACACA
CATGCTACATCAGTGTTAACGCTACGACTGTGATATAGAGCCAGTACACC
GTTACCTTGGCTGTGATGCTCGGAGCACTTAAAACATAGAGCTAGGATCG
AGCACGGCTCTCATAACTCGGAACTTGGCGTACTGTTGTACTTCGGTATA
CCTGGTACCTTCTAAGGGGCTGCAAGGTACTTTTGCTCTGCAGAAAAACG
CGGCGACACACCATGAGTTCGCGTCCACTACAAGATGCCCAGGACTTTCT
CGCCGAGGTGACGGGGTTTGAACTGCCTCATTTACTTTGCGGTTATTTCT
GGTCTCAACTATCGCGTGAGACCCTTGGGCAGAAGACGTCACCCAGACAT
ATGGTCTCCTTTCATGCATGTCTTAGAGCTTCCACTTCGTCCGAACGAAC
ACACTCTTACTGTAATACCGTAGGTGATGACAGCTTAAGATGTAATTCAG
TTGTTCAGTTTTTGTTTGGGCGATGGACAAAATCAGGTATGATAGATCTT
TTCACGGCATATGATATTACTAGGTGTTTTCACGCGCGGGAAGGTTCGGG
GGAGGCTTTTGCTATAGTAGGAAAAGCAGTCGCTTGATGTGGACAAAACC
GGATACCAAAGTGGACAAAAACGGGTGCATGGTGGACAACATCAAGTACT
TCCTTAACTTGGCAGATAAAAACCGGGCGTACCCGGGTGTTTTAGTGGCT
AAAATCGTTCAACAGCATTCATGTGTAGCAGTCGCTCGATGTCGACAAAA
CCGGATACCAAAAGTGGACAAAAACGGGTGTATGGTGGACATCAGGCACT
TCCTTAACTTAGCAGATAAAAACCGGGCGTACCCGGGTGTTTTAGTGGCC
AAAATCGGGCACACTGTTGATCCCCTCTTCGCGTTCACCAGCATTCATGT
GTGTAAAAAAGAAATAATAATGAAGATGTAATATCAGAAGGGTCATACGC
ACGGCTTAGAGCCCCCAAAAAAGTTTTCGTTGGTTGAGCCCGATATAACA
GGACCTTCCCAAGGTGAAACCACCGTATGCCCGATTTTGTCTATAAGAAA
CACCTGGACATACCCGATTTTGTCCATTGCCATTTTTGGGGGTTTTTTGT
AGAAAGATTTCATCGCGACGCAAGTAAAAGCACTCTTCTCGGCGGGCACT
TGCGTTCACCCGCTGTCTCAACCGAACGAAGCAGTTGATAATGCATGATT
TCATGTGTCCATTATTACTCAACCCGCAGGGTATTTTTCGGAGCCTTCTG
GGAGGGGTGACAGAAATTATCGCCACCACAGACGGGCTTGCAAAGACGCA
AGACGCGCTGCTAGCGACAAGCCAAGCTCTGCTGGAAGGTAACGTGGTGC
GCGCACGGTGCGCTGCAAGTCTATAAAATCAACAAAACAGCAACCCCCGG
GTGTAGTGTCTCCGAAAATTACCAACCAAACCCGCCACGATGTTTCTTAA
ATACAACAAATGAAACCATGAGCAAAAAATAAAGCGGAAATTCGTGGGGA
GATTGCAACGCACACCTCTTGTGCCGTACACGCTTATCCGACGTCTTTTG
TGAATAAGTCGAATGCGCAAGGCATATTCGGGAAGGATAGCTGAGCAGCA
ACTTATTGAAACGCCCACCTGTACGAAGTTTTTTTTACCGTGAACTGCCA
CGAGCTGTACCACCATCAAGTTAACGCCTGCCTCTCTCACCCTGGAATGC
CTGCTGGGCGCTTAGTTCGCAACTTTTCGTCGGGGTAAAGTCGCCGATAC
TTTCAACATCCCTATTCATATCAATAGTGGGTGTGGGAAAGAGAGGCGCA
TATTAACTTTTTAAAGAAAAAACTCAACGCATCAAGACCTTCTGAGCACC
CCCCAGTCAGGGAGGGAAATGTCAAAACATTTAGGTGGGATCATAGGCTG
CAAAGACAGCTCAGAAGGTCTAGGTGTGCTCTGATTTTTCTTTTAAAACC
TATTTACGTAATTTAACGAGTTCCCCGATGGTAGTAACATTGGGTCAATA
GTATAATATCGACGAGAAACCCACCATTATGCTGTACACTTACATTAATC
GCCATGCTGGGACACCAAACAAAGCTAAACAAAAGCATTGTAGTACACAT
GGACCAACCAAGGCAGCACTCATACGGGATTACCTTGAGGTTTACTGGCC
CTGTGCCGGCGGACTCTCTGCAGTGAACGCCATCGGGGCTGTACACTTAC
ATTAATCGCCATGCTGGGACACCAAACAAAGCTAAACAAAAGCATTGTAG
TACACATGGACCAACCAAGGCAGCACTCATACGGGATTACCTTGAGGTTT
ACTGGCCCTGTGCCGGCGGACTCTCTGCAGTGAACGCCATCGGTACGCAA
TTGCACGACTCGATAAACTCGGGACTGTCCCGATGGCGTATGGCTGTTTT
AAATAAATAAATGGACGCCGCCGCAGAACTCGGGAGGAATCCCATAAGTA
AGCACCAGATTCACCCTGAGCATGGAGATGAGCAGGCTGACGCGGGACGG
GACTGTTGAACCCGTCTCGCGAGACCAAATTCTCAGGCGCGAAGGCGGAC
AGGGAAATACTTATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAA
CCTTACCCGGTTGGTCCATAATCTTGCTATAGGTGATGGCCATACATACA
TACACATGTTTCTGTCAGTTTTCCGGGTGCAGAGGGTGGCTCTTCTACTG
ATGGTGTGGCTCGTCGCGATGGCGATGGTTGGGAGGAGAACAAGAACAAA
ACAAGAAATACCTCTAGAAAAGGATGCTTCCCGCCTACCGCAACATCACG
GCATGAACTTTGTTACGGTGCCATTGAGGGCGCGACGCTCGCCGGGTGGA
CATACGGGATAGAGAGCGCAGGAAATACCCGTGGGAAATACACCACTACA
AACGGCATCGCTCCGTTGGCTGTTAAGAAACGCGAGGAGCAAACCTCCCC
GCCCCGCCCTATCATAGTAGGGTGAAGTATCGCCGCAAGCAGACCGAGGC
AATCACGCCTAACAAGCAAAAGCTGTTGAAAAAAAAAAAAAAAGTACGTG
TCGAGGTTTCTGCCCAAGCTTAGAACAGGCTCTGCCCGCGACGTCGTCAC
GTGATTGTTTCGCCCCCGCCCGCCCCCCCTAAAATATTCGGCCGGCCTTG
TCTTCTCGTAACCCTGTTGCCATGGATCACTTCTTCCAGAGCTGAGATTG
CACGATACAGCTCACCAGGCCGACGTCATCAACGGGCGAGTGGAGAAGGT
AAACGAATGCTACATTTTATTACCTTACAGCCACCATACTGTGCCCGTTT
CACAATTTAGCCGCAAAGGTTTTCCCGAGGTCTTGATATCTGCAATTGCG
ATTCTACTGGATCGATTGAAAACGCGACGTGCAACGAGGGCGTATGGCGC
AAGGACTGTCGATTCTGGTGAAAGCTTCGACGTTTATCAACTGTTGCGGG
GCAATCGTGGCGCACTTCTCTCTAAGGTAACGGGGGTGCTTTGTGGCTAC
CAGGAACGTAGCAGAAATATGACCGGAGTCTAAGGTCCTGTCCGCGCTCC
ATCGCTAGCTCCAACCCTCGCTGCAATCCGCAACGGCTCAACAGATAAGG
GAAACATCGGCTGCGCTGTCAAGGATTGCCGGGAGATTGGCGGCGCTACG
AAGACGCGCGGATATTCTAGAGGCGGACCTGGAGGCGGACGGATGCGTCG
CGGGCAACAACATGGGCGAACTTCGACTGTAGACCGACCTTAAATATCTC
GATCAACAACGATAGGGTCAAAACTCAAGTATATACGGAAGGAGGAAGCG
ATAGTCTATATACTATTTTGCGTATCGAAATCGAATTTCGATATCTAACG
CATTTTTTTCATCCCTATATATACCAATAGTGGGTGTGGGAAAGAGAGGC
GAATATTAATTGGTCCATGGTGATCTGCCAAGGCAGCACCCGTTCGGAAC
TACCTTGAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1110:69791..73800+

>mRNA_A-nodosum_M_contig1110.6.1 ID=mRNA_A-nodosum_M_contig1110.6.1|Name=mRNA_A-nodosum_M_contig1110.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=351bp|location=Sequence derived from alignment at A-nodosum_M_contig1110:69791..73800+ (Ascophyllum nodosum dioecious)
ATGAGTTCGCGTCCACTACAAGATGCCCAGGACTTTCTCGCCGAGGGTAT
TTTTCGGAGCCTTCTGGGAGGGGTGACAGAAATTATCGCCACCACAGACG
GGCTTGCAAAGACGCAAGACGCGCTGCTAGCGACAAGCCAAGCTCTGCTG
GAAGAGCTGAGATTGCACGATACAGCTCACCAGGCCGACGTCATCAACGG
GCGAGTGGAGAAGATAAGGGAAACATCGGCTGCGCTGTCAAGGATTGCCG
GGAGATTGGCGGCGCTACGAAGACGCGCGGATATTCTAGAGGCGGACCTG
GAGGCGGACGGATGCGTCGCGGGCAACAACATGGGCGAACTTCGACTGTA
G
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